Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AclWI | GGATC | 1 cut(s) | 186 |
| AcvI | CACGTG | 2 cut(s) | 442, 464 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 267, 487 |
| AgsI | TTSAA | 4 cut(s) | 131, 253, 320, 413 |
| AjnI | CCWGG | 1 cut(s) | 485 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 195, 227 |
| AluBI | AGCT | 2 cut(s) | 64, 233 |
| AluI | AGCT | 2 cut(s) | 64, 233 |
| AlwI | GGATC | 1 cut(s) | 186 |
| Ama87I | CYCGRG | 1 cut(s) | 225 |
| AoxI | GGCC | 2 cut(s) | 358, 478 |
| ApeKI | GCWGC | 4 cut(s) | 140, 233, 236, 458 |
| AspS9I | GGNCC | 4 cut(s) | 120, 218, 419, 478 |
| AvaI | CYCGRG | 1 cut(s) | 225 |
| AvaII | GGWCC | 3 cut(s) | 120, 218, 419 |
| BarI | GAAGNNNNNNTAC | 4 cut(s) | 293, 325, 420, 452 |
| BbrPI | CACGTG | 2 cut(s) | 442, 464 |
| BbsI | GAAGAC | 1 cut(s) | 210 |
| BbvI | GCAGC | 4 cut(s) | 152, 220, 248, 470 |
| BciT130I | CCWGG | 1 cut(s) | 487 |
| BfaI | CTAG | 2 cut(s) | 137, 347 |
| BfmI | CTRYAG | 1 cut(s) | 234 |
| BisI | GCNGC | 4 cut(s) | 141, 234, 237, 459 |
| BlsI | GCNGC | 4 cut(s) | 142, 235, 238, 460 |
| Bme1390I | CCNGG | 1 cut(s) | 487 |
| Bme18I | GGWCC | 3 cut(s) | 120, 218, 419 |
| BmeT110I | CYCGRG | 1 cut(s) | 225 |
| BmgT120I | GGNCC | 4 cut(s) | 120, 218, 419, 478 |
| BmiI | GGNNCC | 1 cut(s) | 122 |
| BmrFI | CCNGG | 1 cut(s) | 487 |
| BmsI | GCATC | 1 cut(s) | 25 |
| BpiI | GAAGAC | 1 cut(s) | 210 |
| BpmI | CTGGAG | 1 cut(s) | 105 |
| BsaAI | YACGTR | 3 cut(s) | 15, 442, 464 |
| BsaJI | CCNNGG | 2 cut(s) | 161, 486 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 78, 108 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 267, 487 |
| Bse1I | ACTGG | 1 cut(s) | 369 |
| Bse3DI | GCAATG | 1 cut(s) | 246 |
| BseBI | CCWGG | 1 cut(s) | 487 |
| BseDI | CCNNGG | 2 cut(s) | 161, 486 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 267, 487 |
| BseMI | GCAATG | 1 cut(s) | 246 |
| BseMII | CTCAG | 1 cut(s) | 376 |
| BseNI | ACTGG | 1 cut(s) | 369 |
| BseRI | GAGGAG | 1 cut(s) | 213 |
| BseXI | GCAGC | 4 cut(s) | 152, 220, 248, 470 |
| BshFI | GGCC | 2 cut(s) | 360, 480 |
| BsiHKCI | CYCGRG | 1 cut(s) | 225 |
| BsiSI | CCGG | 1 cut(s) | 422 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 267, 487 |
| BsnI | GGCC | 2 cut(s) | 360, 480 |
| BsoBI | CYCGRG | 1 cut(s) | 225 |
| Bsp143I | GATC | 2 cut(s) | 178, 343 |
| Bsp19I | CCATGG | 1 cut(s) | 161 |
| BspANI | GGCC | 2 cut(s) | 360, 480 |
| BspCNI | CTCAG | 1 cut(s) | 375 |
| BspLI | GGNNCC | 1 cut(s) | 122 |
| BspMAI | CTGCAG | 1 cut(s) | 238 |
| BspPI | GGATC | 1 cut(s) | 186 |
| BsrDI | GCAATG | 1 cut(s) | 246 |
| BsrI | ACTGG | 1 cut(s) | 369 |
| BssECI | CCNNGG | 2 cut(s) | 161, 486 |
| BssMI | GATC | 2 cut(s) | 178, 343 |
| BssT1I | CCWWGG | 1 cut(s) | 161 |
| Bst2UI | CCWGG | 1 cut(s) | 487 |
| Bst4CI | ACNGT | 1 cut(s) | 94 |
| BstBAI | YACGTR | 3 cut(s) | 15, 442, 464 |
| BstDEI | CTNAG | 1 cut(s) | 362 |
| BstDSI | CCRYGG | 1 cut(s) | 161 |
| BstKTI | GATC | 2 cut(s) | 181, 346 |
| BstMBI | GATC | 2 cut(s) | 178, 343 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 242 |
| BstNI | CCWGG | 1 cut(s) | 487 |
| BstSCI | CCNGG | 1 cut(s) | 485 |
| BstSFI | CTRYAG | 1 cut(s) | 234 |
| BstSNI | TACGTA | 1 cut(s) | 15 |
| BstV1I | GCAGC | 4 cut(s) | 152, 220, 248, 470 |
| BstV2I | GAAGAC | 1 cut(s) | 210 |
| BstX2I | RGATCY | 1 cut(s) | 178 |
| BstYI | RGATCY | 1 cut(s) | 178 |
| BsuRI | GGCC | 2 cut(s) | 360, 480 |
| BtgI | CCRYGG | 1 cut(s) | 161 |
| BtsIMutI | CAGTG | 2 cut(s) | 90, 370 |
| Cfr13I | GGNCC | 4 cut(s) | 120, 218, 419, 478 |
| CpoI | CGGWCCG | 1 cut(s) | 419 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 196, 231 |
| CspI | CGGWCCG | 1 cut(s) | 419 |
| CviAII | CATG | 5 cut(s) | 117, 162, 193, 262, 404 |
| CviJI | RGCY | 7 cut(s) | 64, 233, 276, 360, 436, 451, 480 |
| CviKI_1 | RGCY | 7 cut(s) | 64, 233, 276, 360, 436, 451, 480 |
| DdeI | CTNAG | 1 cut(s) | 362 |
| DpnI | GATC | 2 cut(s) | 180, 345 |
| DpnII | GATC | 2 cut(s) | 178, 343 |
| Eco105I | TACGTA | 1 cut(s) | 15 |
| Eco130I | CCWWGG | 1 cut(s) | 161 |
| Eco47I | GGWCC | 3 cut(s) | 120, 218, 419 |
| Eco72I | CACGTG | 2 cut(s) | 442, 464 |
| Eco88I | CYCGRG | 1 cut(s) | 225 |
| EcoRII | CCWGG | 1 cut(s) | 485 |
| EcoT14I | CCWWGG | 1 cut(s) | 161 |
| ErhI | CCWWGG | 1 cut(s) | 161 |
| FaeI | CATG | 5 cut(s) | 120, 165, 196, 265, 407 |
| FatI | CATG | 5 cut(s) | 116, 161, 192, 261, 403 |
| Fnu4HI | GCNGC | 4 cut(s) | 141, 234, 237, 459 |
| Fsp4HI | GCNGC | 4 cut(s) | 141, 234, 237, 459 |
| FspBI | CTAG | 2 cut(s) | 137, 347 |
| GluI | GCNGC | 4 cut(s) | 141, 234, 237, 459 |
| GsuI | CTGGAG | 1 cut(s) | 105 |
| HaeIII | GGCC | 2 cut(s) | 360, 480 |
| HapII | CCGG | 1 cut(s) | 422 |
| Hin1II | CATG | 5 cut(s) | 120, 165, 196, 265, 407 |
| HinfI | GANTC | 3 cut(s) | 4, 87, 445 |
| HpaII | CCGG | 1 cut(s) | 422 |
| Hpy188III | TCNNGA | 2 cut(s) | 84, 410 |
| Hpy99I | CGWCG | 1 cut(s) | 473 |
| HpyCH4III | ACNGT | 1 cut(s) | 94 |
| HpyCH4IV | ACGT | 4 cut(s) | 14, 441, 463, 471 |
| HpyCH4V | TGCA | 2 cut(s) | 23, 236 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 242 |
| HpyF3I | CTNAG | 1 cut(s) | 362 |
| HpySE526I | ACGT | 4 cut(s) | 14, 441, 463, 471 |
| Hsp92II | CATG | 5 cut(s) | 120, 165, 196, 265, 407 |
| Kzo9I | GATC | 2 cut(s) | 178, 343 |
| LmnI | GCTCC | 1 cut(s) | 507 |
| LpnPI | CCDG | 8 cut(s) | 52, 62, 69, 382, 435, 465, 472, 499 |
| Lsp1109I | GCAGC | 4 cut(s) | 152, 220, 248, 470 |
| LweI | GCATC | 1 cut(s) | 25 |
| MaeI | CTAG | 2 cut(s) | 137, 347 |
| MaeII | ACGT | 4 cut(s) | 14, 441, 463, 471 |
| MaeIII | GTNAC | 1 cut(s) | 88 |
| MalI | GATC | 2 cut(s) | 180, 345 |
| MboI | GATC | 2 cut(s) | 178, 343 |
| MboII | GAAGA | 1 cut(s) | 215 |
| MflI | RGATCY | 1 cut(s) | 178 |
| MlyI | GAGTC | 1 cut(s) | 96 |
| MnlI | CCTC | 4 cut(s) | 95, 231, 234, 371 |
| MseI | TTAA | 2 cut(s) | 183, 508 |
| MslI | CAYNNNNRTG | 1 cut(s) | 33 |
| MspI | CCGG | 1 cut(s) | 422 |
| MspR9I | CCNGG | 1 cut(s) | 487 |
| MvaI | CCWGG | 1 cut(s) | 487 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 242 |
| NcoI | CCATGG | 1 cut(s) | 161 |
| NdeII | GATC | 2 cut(s) | 178, 343 |
| NlaIII | CATG | 5 cut(s) | 120, 165, 196, 265, 407 |
| NlaIV | GGNNCC | 1 cut(s) | 122 |
| NmuCI | GTSAC | 1 cut(s) | 88 |
| PaeR7I | CTCGAG | 1 cut(s) | 225 |
| PfeI | GAWTC | 2 cut(s) | 4, 445 |
| PkrI | GCNGC | 4 cut(s) | 142, 235, 238, 460 |
| PleI | GAGTC | 1 cut(s) | 95 |
| PmaCI | CACGTG | 2 cut(s) | 442, 464 |
| PmlI | CACGTG | 2 cut(s) | 442, 464 |
| PpsI | GAGTC | 1 cut(s) | 95 |
| Ppu21I | YACGTR | 3 cut(s) | 15, 442, 464 |
| Psp6I | CCWGG | 1 cut(s) | 485 |
| PspCI | CACGTG | 2 cut(s) | 442, 464 |
| PspGI | CCWGG | 1 cut(s) | 485 |
| PspN4I | GGNNCC | 1 cut(s) | 122 |
| PspPI | GGNCC | 4 cut(s) | 120, 218, 419, 478 |
| PspXI | VCTCGAGB | 1 cut(s) | 225 |
| PstI | CTGCAG | 1 cut(s) | 238 |
| PsuI | RGATCY | 1 cut(s) | 178 |
| RseI | CAYNNNNRTG | 1 cut(s) | 33 |
| Rsr2I | CGGWCCG | 1 cut(s) | 419 |
| RsrII | CGGWCCG | 1 cut(s) | 419 |
| SaqAI | TTAA | 2 cut(s) | 183, 508 |
| SatI | GCNGC | 4 cut(s) | 141, 234, 237, 459 |
| Sau3AI | GATC | 2 cut(s) | 178, 343 |
| Sau96I | GGNCC | 4 cut(s) | 120, 218, 419, 478 |
| SchI | GAGTC | 1 cut(s) | 96 |
| ScrFI | CCNGG | 1 cut(s) | 487 |
| SfaNI | GCATC | 1 cut(s) | 25 |
| SfcI | CTRYAG | 1 cut(s) | 234 |
| Sfr274I | CTCGAG | 1 cut(s) | 225 |
| SinI | GGWCC | 3 cut(s) | 120, 218, 419 |
| SlaI | CTCGAG | 1 cut(s) | 225 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 33 |
| SmlI | CTYRAG | 1 cut(s) | 225 |
| SmoI | CTYRAG | 1 cut(s) | 225 |
| SnaBI | TACGTA | 1 cut(s) | 15 |
| SspMI | CTAG | 2 cut(s) | 137, 347 |
| StyD4I | CCNGG | 1 cut(s) | 485 |
| StyI | CCWWGG | 1 cut(s) | 161 |
| TaaI | ACNGT | 1 cut(s) | 94 |
| TaiI | ACGT | 4 cut(s) | 17, 444, 466, 474 |
| TaqI | TCGA | 2 cut(s) | 226, 342 |
| TaqII | GACCGA | 1 cut(s) | 407 |
| TfiI | GAWTC | 2 cut(s) | 4, 445 |
| Tru1I | TTAA | 2 cut(s) | 183, 508 |
| Tru9I | TTAA | 2 cut(s) | 183, 508 |
| TscAI | CASTG | 2 cut(s) | 97, 370 |
| TseFI | GTSAC | 1 cut(s) | 88 |
| TseI | GCWGC | 4 cut(s) | 140, 233, 236, 458 |
| Tsp45I | GTSAC | 1 cut(s) | 88 |
| TspDTI | ATGAA | 4 cut(s) | 17, 268, 390, 392 |
| TspRI | CASTG | 2 cut(s) | 97, 370 |
| VpaK11BI | GGWCC | 3 cut(s) | 120, 218, 419 |
| XhoI | CTCGAG | 1 cut(s) | 225 |
| XspI | CTAG | 2 cut(s) | 137, 347 |