ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1023 |
| AccI | GTMKAC | 1 cut(s) | 1058 |
| AccII | CGCG | 3 cut(s) | 36, 183, 593 |
| AciI | CCGC | 5 cut(s) | 36, 157, 181, 369, 593 |
| AcsI | RAATTY | 1 cut(s) | 1071 |
| AcvI | CACGTG | 1 cut(s) | 866 |
| AfaI | GTAC | 3 cut(s) | 240, 544, 905 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 502, 994 |
| AflIII | ACRYGT | 2 cut(s) | 302, 808 |
| AgsI | TTSAA | 4 cut(s) | 509, 688, 710, 880 |
| AluBI | AGCT | 5 cut(s) | 65, 343, 389, 518, 727 |
| AluI | AGCT | 5 cut(s) | 65, 343, 389, 518, 727 |
| Alw21I | GWGCWC | 1 cut(s) | 784 |
| Alw26I | GTCTC | 3 cut(s) | 47, 293, 601 |
| Alw44I | GTGCAC | 1 cut(s) | 780 |
| Ama87I | CYCGRG | 2 cut(s) | 50, 378 |
| AoxI | GGCC | 2 cut(s) | 194, 1080 |
| ApaLI | GTGCAC | 1 cut(s) | 780 |
| ApeKI | GCWGC | 4 cut(s) | 4, 310, 422, 643 |
| ApoI | RAATTY | 1 cut(s) | 1071 |
| AspLEI | GCGC | 1 cut(s) | 593 |
| AspS9I | GGNCC | 4 cut(s) | 194, 371, 736, 1080 |
| AsuC2I | CCSGG | 2 cut(s) | 379, 380 |
| AsuHPI | GGTGA | 1 cut(s) | 1009 |
| AvaI | CYCGRG | 2 cut(s) | 50, 378 |
| AvaII | GGWCC | 2 cut(s) | 371, 736 |
| BaeGI | GKGCMC | 2 cut(s) | 286, 784 |
| BanII | GRGCYC | 1 cut(s) | 385 |
| BbrPI | CACGTG | 1 cut(s) | 866 |
| Bbv12I | GWGCWC | 1 cut(s) | 784 |
| BbvI | GCAGC | 3 cut(s) | 297, 409, 655 |
| BccI | CCATC | 1 cut(s) | 878 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 733, 767 |
| BclI | TGATCA | 1 cut(s) | 487 |
| BcnI | CCSGG | 2 cut(s) | 379, 380 |
| BcoDI | GTCTC | 3 cut(s) | 47, 293, 601 |
| BfaI | CTAG | 2 cut(s) | 122, 386 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 162 |
| BisI | GCNGC | 5 cut(s) | 5, 157, 311, 423, 644 |
| BlsI | GCNGC | 5 cut(s) | 6, 158, 312, 424, 645 |
| BmcAI | AGTACT | 1 cut(s) | 544 |
| Bme1390I | CCNGG | 2 cut(s) | 379, 380 |
| Bme18I | GGWCC | 2 cut(s) | 371, 736 |
| BmeT110I | CYCGRG | 2 cut(s) | 50, 378 |
| BmgT120I | GGNCC | 4 cut(s) | 194, 371, 736, 1080 |
| BmiI | GGNNCC | 3 cut(s) | 195, 528, 655 |
| BmrFI | CCNGG | 2 cut(s) | 379, 380 |
| BmsI | GCATC | 3 cut(s) | 252, 261, 1012 |
| BoxI | GACNNNNGTC | 1 cut(s) | 613 |
| BpuEI | CTTGAG | 1 cut(s) | 760 |
| BpuMI | CCSGG | 2 cut(s) | 379, 380 |
| BsaAI | YACGTR | 1 cut(s) | 866 |
| BsaJI | CCNNGG | 3 cut(s) | 314, 377, 378 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 532, 562 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 502, 994 |
| Bse1I | ACTGG | 1 cut(s) | 676 |
| Bse3DI | GCAATG | 2 cut(s) | 222, 593 |
| BseDI | CCNNGG | 3 cut(s) | 314, 377, 378 |
| BseGI | GGATG | 2 cut(s) | 600, 889 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 502, 994 |
| BseMI | GCAATG | 2 cut(s) | 222, 593 |
| BseMII | CTCAG | 2 cut(s) | 218, 1032 |
| BseNI | ACTGG | 1 cut(s) | 676 |
| BseSI | GKGCMC | 2 cut(s) | 286, 784 |
| BseXI | GCAGC | 3 cut(s) | 297, 409, 655 |
| BsgI | GTGCAG | 1 cut(s) | 101 |
| Bsh1236I | CGCG | 3 cut(s) | 36, 183, 593 |
| BshFI | GGCC | 2 cut(s) | 196, 1082 |
| BsiHKAI | GWGCWC | 1 cut(s) | 784 |
| BsiHKCI | CYCGRG | 2 cut(s) | 50, 378 |
| BsiSI | CCGG | 1 cut(s) | 379 |
| BsiWI | CGTACG | 1 cut(s) | 238 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 502, 994 |
| BsmAI | GTCTC | 3 cut(s) | 47, 293, 601 |
| BsnI | GGCC | 2 cut(s) | 196, 1082 |
| BsoBI | CYCGRG | 2 cut(s) | 50, 378 |
| Bsp1286I | GDGCHC | 3 cut(s) | 286, 385, 784 |
| Bsp143I | GATC | 4 cut(s) | 232, 487, 860, 1117 |
| BspACI | CCGC | 5 cut(s) | 36, 157, 181, 369, 593 |
| BspANI | GGCC | 2 cut(s) | 196, 1082 |
| BspCNI | CTCAG | 2 cut(s) | 217, 1033 |
| BspFNI | CGCG | 3 cut(s) | 36, 183, 593 |
| BspHI | TCATGA | 2 cut(s) | 229, 1107 |
| BspLI | GGNNCC | 3 cut(s) | 195, 528, 655 |
| BsrDI | GCAATG | 2 cut(s) | 222, 593 |
| BsrI | ACTGG | 1 cut(s) | 676 |
| BssECI | CCNNGG | 3 cut(s) | 314, 377, 378 |
| BssMI | GATC | 4 cut(s) | 232, 487, 860, 1117 |
| BssT1I | CCWWGG | 1 cut(s) | 314 |
| Bst4CI | ACNGT | 3 cut(s) | 32, 612, 786 |
| Bst6I | CTCTTC | 1 cut(s) | 1042 |
| BstBAI | YACGTR | 1 cut(s) | 866 |
| BstC8I | GCNNGC | 3 cut(s) | 84, 213, 427 |
| BstDEI | CTNAG | 2 cut(s) | 204, 1041 |
| BstF5I | GGATG | 2 cut(s) | 600, 889 |
| BstFNI | CGCG | 3 cut(s) | 36, 183, 593 |
| BstHHI | GCGC | 1 cut(s) | 593 |
| BstKTI | GATC | 4 cut(s) | 235, 490, 863, 1120 |
| BstMAI | GTCTC | 3 cut(s) | 47, 293, 601 |
| BstMBI | GATC | 4 cut(s) | 232, 487, 860, 1117 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 162, 217, 316, 395 |
| BstNSI | RCATGY | 4 cut(s) | 156, 306, 698, 812 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 613 |
| BstSCI | CCNGG | 2 cut(s) | 377, 378 |
| BstSLI | GKGCMC | 2 cut(s) | 286, 784 |
| BstUI | CGCG | 3 cut(s) | 36, 183, 593 |
| BstV1I | GCAGC | 3 cut(s) | 297, 409, 655 |
| BsuRI | GGCC | 2 cut(s) | 196, 1082 |
| BtsCI | GGATG | 2 cut(s) | 600, 889 |
| BtsIMutI | CAGTG | 1 cut(s) | 617 |
| Cac8I | GCNNGC | 3 cut(s) | 84, 213, 427 |
| CciI | TCATGA | 2 cut(s) | 229, 1107 |
| CfoI | GCGC | 1 cut(s) | 593 |
| Cfr13I | GGNCC | 4 cut(s) | 194, 371, 736, 1080 |
| Cfr9I | CCCGGG | 1 cut(s) | 378 |
| CseI | GACGC | 2 cut(s) | 172, 428 |
| Csp6I | GTAC | 3 cut(s) | 239, 543, 904 |
| CviAII | CATG | 7 cut(s) | 153, 230, 303, 575, 695, 809, 1108 |
| CviQI | GTAC | 3 cut(s) | 239, 543, 904 |
| DdeI | CTNAG | 2 cut(s) | 204, 1041 |
| DpnI | GATC | 4 cut(s) | 234, 489, 862, 1119 |
| DpnII | GATC | 4 cut(s) | 232, 487, 860, 1117 |
| Eam1104I | CTCTTC | 1 cut(s) | 1042 |
| EarI | CTCTTC | 1 cut(s) | 1042 |
| Eco130I | CCWWGG | 1 cut(s) | 314 |
| Eco24I | GRGCYC | 1 cut(s) | 385 |
| Eco32I | GATATC | 1 cut(s) | 598 |
| Eco47I | GGWCC | 2 cut(s) | 371, 736 |
| Eco72I | CACGTG | 1 cut(s) | 866 |
| Eco88I | CYCGRG | 2 cut(s) | 50, 378 |
| EcoRV | GATATC | 1 cut(s) | 598 |
| EcoT14I | CCWWGG | 1 cut(s) | 314 |
| EcoT38I | GRGCYC | 1 cut(s) | 385 |
| ErhI | CCWWGG | 1 cut(s) | 314 |
| FaeI | CATG | 7 cut(s) | 156, 233, 306, 578, 698, 812, 1111 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 711, 743 |
| FatI | CATG | 7 cut(s) | 152, 229, 302, 574, 694, 808, 1107 |
| FauI | CCCGC | 1 cut(s) | 29 |
| FbaI | TGATCA | 1 cut(s) | 487 |
| FblI | GTMKAC | 1 cut(s) | 1058 |
| Fnu4HI | GCNGC | 5 cut(s) | 5, 157, 311, 423, 644 |
| FokI | GGATG | 2 cut(s) | 587, 896 |
| FriOI | GRGCYC | 1 cut(s) | 385 |
| Fsp4HI | GCNGC | 5 cut(s) | 5, 157, 311, 423, 644 |
| FspBI | CTAG | 2 cut(s) | 122, 386 |
| GlaI | GCGC | 1 cut(s) | 592 |
| GluI | GCNGC | 5 cut(s) | 5, 157, 311, 423, 644 |
| HaeIII | GGCC | 2 cut(s) | 196, 1082 |
| HapII | CCGG | 1 cut(s) | 379 |
| HgaI | GACGC | 2 cut(s) | 172, 428 |
| HhaI | GCGC | 1 cut(s) | 593 |
| Hin1II | CATG | 7 cut(s) | 156, 233, 306, 578, 698, 812, 1111 |
| Hin6I | GCGC | 1 cut(s) | 591 |
| HinP1I | GCGC | 1 cut(s) | 591 |
| HincII | GTYRAC | 1 cut(s) | 46 |
| HindII | GTYRAC | 1 cut(s) | 46 |
| HinfI | GANTC | 6 cut(s) | 200, 226, 349, 482, 661, 1055 |
| HpaI | GTTAAC | 1 cut(s) | 46 |
| HpaII | CCGG | 1 cut(s) | 379 |
| HphI | GGTGA | 1 cut(s) | 1009 |
| Hpy166II | GTNNAC | 4 cut(s) | 46, 782, 978, 1059 |
| Hpy188I | TCNGA | 6 cut(s) | 481, 487, 536, 994, 1042, 1069 |
| Hpy188III | TCNNGA | 7 cut(s) | 25, 52, 230, 274, 604, 731, 1108 |
| Hpy8I | GTNNAC | 4 cut(s) | 46, 782, 978, 1059 |
| Hpy99I | CGWCG | 2 cut(s) | 252, 552 |
| HpyAV | CCTTC | 4 cut(s) | 531, 781, 874, 1042 |
| HpyCH4III | ACNGT | 3 cut(s) | 32, 612, 786 |
| HpyCH4IV | ACGT | 2 cut(s) | 712, 865 |
| HpyCH4V | TGCA | 8 cut(s) | 7, 82, 170, 215, 265, 425, 643, 782 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 162, 217, 316, 395 |
| HpyF3I | CTNAG | 2 cut(s) | 204, 1041 |
| HpySE526I | ACGT | 2 cut(s) | 712, 865 |
| Hsp92II | CATG | 7 cut(s) | 156, 233, 306, 578, 698, 812, 1111 |
| HspAI | GCGC | 1 cut(s) | 591 |
| Ksp22I | TGATCA | 1 cut(s) | 487 |
| KspAI | GTTAAC | 1 cut(s) | 46 |
| Kzo9I | GATC | 4 cut(s) | 232, 487, 860, 1117 |
| LmnI | GCTCC | 2 cut(s) | 526, 625 |
| Lsp1109I | GCAGC | 3 cut(s) | 297, 409, 655 |
| LweI | GCATC | 3 cut(s) | 252, 261, 1012 |
| MaeI | CTAG | 2 cut(s) | 122, 386 |
| MaeII | ACGT | 2 cut(s) | 712, 865 |
| MaeIII | GTNAC | 4 cut(s) | 407, 697, 747, 1096 |
| MalI | GATC | 4 cut(s) | 234, 489, 862, 1119 |
| MboI | GATC | 4 cut(s) | 232, 487, 860, 1117 |
| MboII | GAAGA | 4 cut(s) | 97, 803, 813, 1029 |
| MhlI | GDGCHC | 3 cut(s) | 286, 385, 784 |
| MluCI | AATT | 3 cut(s) | 142, 462, 1071 |
| MlyI | GAGTC | 4 cut(s) | 194, 235, 476, 1064 |
| MseI | TTAA | 2 cut(s) | 45, 336 |
| MslI | CAYNNNNRTG | 2 cut(s) | 260, 1088 |
| MspI | CCGG | 1 cut(s) | 379 |
| MspR9I | CCNGG | 2 cut(s) | 379, 380 |
| MvnI | CGCG | 3 cut(s) | 36, 183, 593 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 162, 217, 316, 395 |
| NciI | CCSGG | 2 cut(s) | 379, 380 |
| NdeII | GATC | 4 cut(s) | 232, 487, 860, 1117 |
| NlaIII | CATG | 7 cut(s) | 156, 233, 306, 578, 698, 812, 1111 |
| NlaIV | GGNNCC | 3 cut(s) | 195, 528, 655 |
| NmuCI | GTSAC | 1 cut(s) | 407 |
| NspI | RCATGY | 4 cut(s) | 156, 306, 698, 812 |
| PaeR7I | CTCGAG | 1 cut(s) | 50 |
| PagI | TCATGA | 2 cut(s) | 229, 1107 |
| PciI | ACATGT | 2 cut(s) | 302, 808 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 553 |
| PfeI | GAWTC | 2 cut(s) | 349, 661 |
| Pfl23II | CGTACG | 1 cut(s) | 238 |
| PkrI | GCNGC | 5 cut(s) | 6, 158, 312, 424, 645 |
| PleI | GAGTC | 4 cut(s) | 194, 234, 476, 1063 |
| PmaCI | CACGTG | 1 cut(s) | 866 |
| PmlI | CACGTG | 1 cut(s) | 866 |
| PpsI | GAGTC | 4 cut(s) | 194, 234, 476, 1063 |
| Ppu21I | YACGTR | 1 cut(s) | 866 |
| PscI | ACATGT | 2 cut(s) | 302, 808 |
| PshAI | GACNNNNGTC | 1 cut(s) | 613 |
| PsiI | TTATAA | 1 cut(s) | 1023 |
| PspCI | CACGTG | 1 cut(s) | 866 |
| PspLI | CGTACG | 1 cut(s) | 238 |
| PspN4I | GGNNCC | 3 cut(s) | 195, 528, 655 |
| PspPI | GGNCC | 4 cut(s) | 194, 371, 736, 1080 |
| RsaI | GTAC | 3 cut(s) | 240, 544, 905 |
| RsaNI | GTAC | 3 cut(s) | 239, 543, 904 |
| RseI | CAYNNNNRTG | 2 cut(s) | 260, 1088 |
| SaqAI | TTAA | 2 cut(s) | 45, 336 |
| SatI | GCNGC | 5 cut(s) | 5, 157, 311, 423, 644 |
| Sau3AI | GATC | 4 cut(s) | 232, 487, 860, 1117 |
| Sau96I | GGNCC | 4 cut(s) | 194, 371, 736, 1080 |
| ScaI | AGTACT | 1 cut(s) | 544 |
| SchI | GAGTC | 4 cut(s) | 194, 235, 476, 1064 |
| ScrFI | CCNGG | 2 cut(s) | 379, 380 |
| SduI | GDGCHC | 3 cut(s) | 286, 385, 784 |
| SfaNI | GCATC | 3 cut(s) | 252, 261, 1012 |
| Sfr274I | CTCGAG | 1 cut(s) | 50 |
| SinI | GGWCC | 2 cut(s) | 371, 736 |
| SlaI | CTCGAG | 1 cut(s) | 50 |
| SmaI | CCCGGG | 1 cut(s) | 380 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 260, 1088 |
| SmlI | CTYRAG | 2 cut(s) | 50, 775 |
| SmoI | CTYRAG | 2 cut(s) | 50, 775 |
| Sse9I | AATT | 3 cut(s) | 142, 462, 1071 |
| SsiI | CCGC | 5 cut(s) | 36, 157, 181, 369, 593 |
| SspI | AATATT | 1 cut(s) | 848 |
| SspMI | CTAG | 2 cut(s) | 122, 386 |
| StyD4I | CCNGG | 2 cut(s) | 377, 378 |
| StyI | CCWWGG | 1 cut(s) | 314 |
| TaaI | ACNGT | 3 cut(s) | 32, 612, 786 |
| TaiI | ACGT | 2 cut(s) | 715, 868 |
| TaqI | TCGA | 6 cut(s) | 51, 273, 352, 561, 723, 753 |
| TaqII | GACCGA | 1 cut(s) | 447 |
| TasI | AATT | 3 cut(s) | 142, 462, 1071 |
| TatI | WGTACW | 1 cut(s) | 542 |
| TauI | GCSGC | 1 cut(s) | 159 |
| TfiI | GAWTC | 2 cut(s) | 349, 661 |
| Tru1I | TTAA | 2 cut(s) | 45, 336 |
| Tru9I | TTAA | 2 cut(s) | 45, 336 |
| TscAI | CASTG | 1 cut(s) | 617 |
| TseFI | GTSAC | 1 cut(s) | 407 |
| TseI | GCWGC | 4 cut(s) | 4, 310, 422, 643 |
| Tsp45I | GTSAC | 1 cut(s) | 407 |
| TspDTI | ATGAA | 5 cut(s) | 804, 899, 974, 1106, 1124 |
| TspMI | CCCGGG | 1 cut(s) | 378 |
| TspRI | CASTG | 1 cut(s) | 617 |
| VneI | GTGCAC | 1 cut(s) | 780 |
| VpaK11BI | GGWCC | 2 cut(s) | 371, 736 |
| XapI | RAATTY | 1 cut(s) | 1071 |
| XceI | RCATGY | 4 cut(s) | 156, 306, 698, 812 |
| XhoI | CTCGAG | 1 cut(s) | 50 |
| XmaI | CCCGGG | 1 cut(s) | 378 |
| XmiI | GTMKAC | 1 cut(s) | 1058 |
| XspI | CTAG | 2 cut(s) | 122, 386 |
| ZrmI | AGTACT | 1 cut(s) | 544 |