ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 2424 |
| AarI | CACCTGC | 1 cut(s) | 1596 |
| Acc16I | TGCGCA | 1 cut(s) | 657 |
| Acc36I | ACCTGC | 2 cut(s) | 1596, 1987 |
| AccB1I | GGYRCC | 1 cut(s) | 424 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 2891 |
| AccBSI | CCGCTC | 1 cut(s) | 1408 |
| AccI | GTMKAC | 2 cut(s) | 1469, 2907 |
| AccII | CGCG | 3 cut(s) | 1633, 1928, 3921 |
| AccIII | TCCGGA | 3 cut(s) | 1819, 3709, 3807 |
| AcoI | YGGCCR | 2 cut(s) | 286, 1388 |
| AcsI | RAATTY | 5 cut(s) | 166, 2244, 2289, 2986, 3482 |
| AcuI | CTGAAG | 2 cut(s) | 2031, 2318 |
| AcyI | GRCGYC | 1 cut(s) | 3565 |
| AfaI | GTAC | 7 cut(s) | 453, 488, 754, 1780, 3099, 3374, 3785 |
| AfiI | CCNNNNNNNGG | 8 cut(s) | 391, 529, 1146, 1198, 1262, 1380, 2393, 2891 |
| AflII | CTTAAG | 1 cut(s) | 386 |
| AflIII | ACRYGT | 2 cut(s) | 951, 3369 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 3564 |
| AjiI | CACGTC | 2 cut(s) | 1811, 2952 |
| AjnI | CCWGG | 2 cut(s) | 1145, 3690 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 1468, 1500 |
| Alw21I | GWGCWC | 3 cut(s) | 590, 1816, 3001 |
| Alw26I | GTCTC | 5 cut(s) | 290, 1005, 3734, 3927, 3953 |
| Alw44I | GTGCAC | 1 cut(s) | 1812 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 439, 3896 |
| Ama87I | CYCGRG | 3 cut(s) | 161, 211, 1008 |
| Aor13HI | TCCGGA | 3 cut(s) | 1819, 3709, 3807 |
| ApaI | GGGCCC | 1 cut(s) | 1463 |
| ApaLI | GTGCAC | 1 cut(s) | 1812 |
| ApeKI | GCWGC | 8 cut(s) | 542, 1114, 1765, 2120, 2627, 2701, 3206, 3887 |
| ApoI | RAATTY | 5 cut(s) | 166, 2244, 2289, 2986, 3482 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 1496, 1528 |
| AseI | ATTAAT | 2 cut(s) | 671, 1449 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 467 |
| AspLEI | GCGC | 2 cut(s) | 658, 3923 |
| AspS9I | GGNCC | 9 cut(s) | 739, 967, 1177, 1459, 1460, 1574, 1869, 3493, 3800 |
| AsuC2I | CCSGG | 3 cut(s) | 281, 1739, 3579 |
| AsuII | TTCGAA | 2 cut(s) | 471, 1066 |
| AsuNHI | GCTAGC | 1 cut(s) | 3607 |
| AvaI | CYCGRG | 3 cut(s) | 161, 211, 1008 |
| AvaII | GGWCC | 4 cut(s) | 967, 1869, 3493, 3800 |
| AxyI | CCTNAGG | 1 cut(s) | 3672 |
| BaeGI | GKGCMC | 2 cut(s) | 1463, 1816 |
| BalI | TGGCCA | 1 cut(s) | 288 |
| BamHI | GGATCC | 3 cut(s) | 72, 1318, 1734 |
| BanI | GGYRCC | 1 cut(s) | 424 |
| BanII | GRGCYC | 4 cut(s) | 590, 914, 1463, 3305 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 3753, 3785 |
| BbsI | GAAGAC | 4 cut(s) | 1813, 2803, 3533, 3768 |
| Bbv12I | GWGCWC | 3 cut(s) | 590, 1816, 3001 |
| BbvI | GCAGC | 8 cut(s) | 529, 1126, 1752, 2132, 2614, 2688, 3218, 3874 |
| BceAI | ACGGC | 4 cut(s) | 390, 1514, 1664, 3760 |
| BciT130I | CCWGG | 2 cut(s) | 1147, 3692 |
| BciVI | GTATCC | 1 cut(s) | 1219 |
| BclI | TGATCA | 1 cut(s) | 1426 |
| BcnI | CCSGG | 3 cut(s) | 281, 1739, 3579 |
| BcoDI | GTCTC | 5 cut(s) | 290, 1005, 3734, 3927, 3953 |
| BfmI | CTRYAG | 4 cut(s) | 603, 2628, 3269, 3888 |
| BfrI | CTTAAG | 1 cut(s) | 386 |
| BfuAI | ACCTGC | 2 cut(s) | 1596, 1987 |
| BfuI | GTATCC | 1 cut(s) | 1219 |
| BglII | AGATCT | 2 cut(s) | 25, 2933 |
| BmcAI | AGTACT | 1 cut(s) | 3785 |
| Bme1390I | CCNGG | 5 cut(s) | 281, 1147, 1739, 3579, 3692 |
| Bme18I | GGWCC | 4 cut(s) | 967, 1869, 3493, 3800 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 3564 |
| BmeT110I | CYCGRG | 3 cut(s) | 161, 211, 1008 |
| BmgBI | CACGTC | 2 cut(s) | 1811, 2952 |
| BmgT120I | GGNCC | 9 cut(s) | 739, 967, 1177, 1459, 1460, 1574, 1869, 3493, 3800 |
| BmrFI | CCNGG | 5 cut(s) | 281, 1147, 1739, 3579, 3692 |
| BmrI | ACTGGG | 1 cut(s) | 741 |
| BmsI | GCATC | 4 cut(s) | 643, 2078, 2826, 3178 |
| BmtI | GCTAGC | 1 cut(s) | 3611 |
| BmuI | ACTGGG | 1 cut(s) | 741 |
| BoxI | GACNNNNGTC | 1 cut(s) | 3726 |
| BpiI | GAAGAC | 4 cut(s) | 1813, 2803, 3533, 3768 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 2394, 2426 |
| BpmI | CTGGAG | 2 cut(s) | 857, 2287 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1141 |
| Bpu14I | TTCGAA | 2 cut(s) | 471, 1066 |
| BpuEI | CTTGAG | 4 cut(s) | 986, 1009, 3319, 3359 |
| BpuMI | CCSGG | 3 cut(s) | 281, 1739, 3579 |
| Bsa29I | ATCGAT | 1 cut(s) | 3817 |
| BsaAI | YACGTR | 1 cut(s) | 3372 |
| BsaBI | GATNNNNATC | 1 cut(s) | 3437 |
| BsaHI | GRCGYC | 1 cut(s) | 3565 |
| BsaI | GGTCTC | 3 cut(s) | 1005, 3734, 3927 |
| BsaJI | CCNNGG | 6 cut(s) | 89, 546, 1544, 1631, 2387, 3344 |
| BsaWI | WCCGGW | 7 cut(s) | 55, 1373, 1819, 3029, 3709, 3807, 3951 |
| BsaXI | ACNNNNNCTCC | 8 cut(s) | 1468, 1498, 2552, 2582, 2886, 2916, 3024, 3054 |
| Bsc4I | CCNNNNNNNGG | 8 cut(s) | 391, 529, 1146, 1198, 1262, 1380, 2393, 2891 |
| Bse118I | RCCGGY | 3 cut(s) | 522, 572, 1390 |
| Bse1I | ACTGG | 5 cut(s) | 747, 1180, 1267, 1886, 2885 |
| Bse21I | CCTNAGG | 1 cut(s) | 3672 |
| Bse3DI | GCAATG | 3 cut(s) | 1486, 2672, 3468 |
| Bse8I | GATNNNNATC | 1 cut(s) | 3437 |
| BseAI | TCCGGA | 3 cut(s) | 1819, 3709, 3807 |
| BseBI | CCWGG | 2 cut(s) | 1147, 3692 |
| BseCI | ATCGAT | 1 cut(s) | 3817 |
| BseDI | CCNNGG | 6 cut(s) | 89, 546, 1544, 1631, 2387, 3344 |
| BseJI | GATNNNNATC | 1 cut(s) | 3437 |
| BseLI | CCNNNNNNNGG | 8 cut(s) | 391, 529, 1146, 1198, 1262, 1380, 2393, 2891 |
| BseMI | GCAATG | 3 cut(s) | 1486, 2672, 3468 |
| BseMII | CTCAG | 7 cut(s) | 215, 1986, 2802, 3213, 3663, 3693, 3905 |
| BseNI | ACTGG | 5 cut(s) | 747, 1180, 1267, 1886, 2885 |
| BseRI | GAGGAG | 7 cut(s) | 1766, 1862, 1865, 2563, 2843, 3710, 3728 |
| BseSI | GKGCMC | 2 cut(s) | 1463, 1816 |
| BseX3I | CGGCCG | 1 cut(s) | 1388 |
| BseXI | GCAGC | 8 cut(s) | 529, 1126, 1752, 2132, 2614, 2688, 3218, 3874 |
| BseYI | CCCAGC | 1 cut(s) | 2255 |
| BsgI | GTGCAG | 1 cut(s) | 2555 |
| Bsh1236I | CGCG | 3 cut(s) | 1633, 1928, 3921 |
| Bsh1285I | CGRYCG | 1 cut(s) | 1391 |
| BshNI | GGYRCC | 1 cut(s) | 424 |
| BshVI | ATCGAT | 1 cut(s) | 3817 |
| BsiEI | CGRYCG | 1 cut(s) | 1391 |
| BsiHKAI | GWGCWC | 3 cut(s) | 590, 1816, 3001 |
| BsiHKCI | CYCGRG | 3 cut(s) | 161, 211, 1008 |
| BslFI | GGGAC | 4 cut(s) | 709, 980, 1855, 2119 |
| BslI | CCNNNNNNNGG | 8 cut(s) | 391, 529, 1146, 1198, 1262, 1380, 2393, 2891 |
| BsmAI | GTCTC | 5 cut(s) | 290, 1005, 3734, 3927, 3953 |
| BsmBI | CGTCTC | 1 cut(s) | 3953 |
| BsmFI | GGGAC | 4 cut(s) | 709, 980, 1855, 2119 |
| Bso31I | GGTCTC | 3 cut(s) | 1005, 3734, 3927 |
| BsoBI | CYCGRG | 3 cut(s) | 161, 211, 1008 |
| Bsp119I | TTCGAA | 2 cut(s) | 471, 1066 |
| Bsp120I | GGGCCC | 1 cut(s) | 1459 |
| Bsp1286I | GDGCHC | 6 cut(s) | 590, 914, 1463, 1816, 3001, 3305 |
| Bsp13I | TCCGGA | 3 cut(s) | 1819, 3709, 3807 |
| Bsp1407I | TGTACA | 1 cut(s) | 3097 |
| Bsp19I | CCATGG | 1 cut(s) | 3344 |
| BspCNI | CTCAG | 7 cut(s) | 216, 1985, 2803, 3214, 3664, 3694, 3906 |
| BspDI | ATCGAT | 1 cut(s) | 3817 |
| BspEI | TCCGGA | 3 cut(s) | 1819, 3709, 3807 |
| BspFNI | CGCG | 3 cut(s) | 1633, 1928, 3921 |
| BspMAI | CTGCAG | 2 cut(s) | 2632, 3892 |
| BspMI | ACCTGC | 2 cut(s) | 1596, 1987 |
| BspOI | GCTAGC | 1 cut(s) | 3611 |
| BspT104I | TTCGAA | 2 cut(s) | 471, 1066 |
| BspT107I | GGYRCC | 1 cut(s) | 424 |
| BspTI | CTTAAG | 1 cut(s) | 386 |
| BspTNI | GGTCTC | 3 cut(s) | 1005, 3734, 3927 |
| BsrBI | CCGCTC | 1 cut(s) | 1408 |
| BsrDI | GCAATG | 3 cut(s) | 1486, 2672, 3468 |
| BsrFI | RCCGGY | 3 cut(s) | 522, 572, 1390 |
| BsrGI | TGTACA | 1 cut(s) | 3097 |
| BsrI | ACTGG | 5 cut(s) | 747, 1180, 1267, 1886, 2885 |
| BssAI | RCCGGY | 3 cut(s) | 522, 572, 1390 |
| BssECI | CCNNGG | 6 cut(s) | 89, 546, 1544, 1631, 2387, 3344 |
| BssNAI | GTATAC | 1 cut(s) | 1470 |
| BssNI | GRCGYC | 1 cut(s) | 3565 |
| BssT1I | CCWWGG | 4 cut(s) | 546, 1544, 2387, 3344 |
| Bst1107I | GTATAC | 1 cut(s) | 1470 |
| Bst2UI | CCWGG | 2 cut(s) | 1147, 3692 |
| Bst4CI | ACNGT | 8 cut(s) | 562, 607, 1171, 2528, 3060, 3409, 3619, 3725 |
| Bst6I | CTCTTC | 6 cut(s) | 362, 1145, 1671, 2395, 2633, 3672 |
| BstACI | GRCGYC | 1 cut(s) | 3565 |
| BstAFI | CTTAAG | 1 cut(s) | 386 |
| BstAUI | TGTACA | 1 cut(s) | 3097 |
| BstBAI | YACGTR | 1 cut(s) | 3372 |
| BstBI | TTCGAA | 2 cut(s) | 471, 1066 |
| BstDSI | CCRYGG | 3 cut(s) | 89, 1631, 3344 |
| BstEII | GGTNACC | 1 cut(s) | 3613 |
| BstFNI | CGCG | 3 cut(s) | 1633, 1928, 3921 |
| BstHHI | GCGC | 2 cut(s) | 658, 3923 |
| BstMAI | GTCTC | 5 cut(s) | 290, 1005, 3734, 3927, 3953 |
| BstMCI | CGRYCG | 1 cut(s) | 1391 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 1120, 1642, 2179, 2416, 2569, 3395 |
| BstNI | CCWGG | 2 cut(s) | 1147, 3692 |
| BstNSI | RCATGY | 3 cut(s) | 702, 2708, 3597 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 3726 |
| BstPI | GGTNACC | 1 cut(s) | 3613 |
| BstSCI | CCNGG | 5 cut(s) | 279, 1145, 1737, 3577, 3690 |
| BstSFI | CTRYAG | 4 cut(s) | 603, 2628, 3269, 3888 |
| BstSLI | GKGCMC | 2 cut(s) | 1463, 1816 |
| BstUI | CGCG | 3 cut(s) | 1633, 1928, 3921 |
| BstV1I | GCAGC | 8 cut(s) | 529, 1126, 1752, 2132, 2614, 2688, 3218, 3874 |
| BstV2I | GAAGAC | 4 cut(s) | 1813, 2803, 3533, 3768 |
| BstX2I | RGATCY | 7 cut(s) | 25, 72, 1318, 1536, 1734, 2933, 3892 |
| BstYI | RGATCY | 7 cut(s) | 25, 72, 1318, 1536, 1734, 2933, 3892 |
| BstZ17I | GTATAC | 1 cut(s) | 1470 |
| BstZI | CGGCCG | 1 cut(s) | 1388 |
| Bsu15I | ATCGAT | 1 cut(s) | 3817 |
| Bsu36I | CCTNAGG | 1 cut(s) | 3672 |
| BsuI | GTATCC | 1 cut(s) | 1219 |
| BsuTUI | ATCGAT | 1 cut(s) | 3817 |
| BtgI | CCRYGG | 3 cut(s) | 89, 1631, 3344 |
| BtgZI | GCGATG | 1 cut(s) | 2483 |
| BtrI | CACGTC | 2 cut(s) | 1811, 2952 |
| BtsI | GCAGTG | 5 cut(s) | 1100, 1988, 2614, 3546, 3882 |
| BveI | ACCTGC | 2 cut(s) | 1596, 1987 |
| CaiI | CAGNNNCTG | 2 cut(s) | 439, 3896 |
| CfoI | GCGC | 2 cut(s) | 658, 3923 |
| Cfr10I | RCCGGY | 3 cut(s) | 522, 572, 1390 |
| Cfr13I | GGNCC | 9 cut(s) | 739, 967, 1177, 1459, 1460, 1574, 1869, 3493, 3800 |
| Cfr42I | CCGCGG | 1 cut(s) | 1634 |
| ClaI | ATCGAT | 1 cut(s) | 3817 |
| CseI | GACGC | 1 cut(s) | 3554 |
| Csp6I | GTAC | 7 cut(s) | 452, 487, 753, 1779, 3098, 3373, 3784 |
| CspCI | CAANNNNNGTGG | 4 cut(s) | 2201, 2236, 2933, 2968 |
| CviQI | GTAC | 7 cut(s) | 452, 487, 753, 1779, 3098, 3373, 3784 |
| DriI | GACNNNNNGTC | 1 cut(s) | 3564 |
| EaeI | YGGCCR | 2 cut(s) | 286, 1388 |
| EagI | CGGCCG | 1 cut(s) | 1388 |
| Eam1104I | CTCTTC | 6 cut(s) | 362, 1145, 1671, 2395, 2633, 3672 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 3564 |
| EarI | CTCTTC | 6 cut(s) | 362, 1145, 1671, 2395, 2633, 3672 |
| EciI | GGCGGA | 1 cut(s) | 1331 |
| Ecl136II | GAGCTC | 1 cut(s) | 588 |
| EclXI | CGGCCG | 1 cut(s) | 1388 |
| Eco130I | CCWWGG | 4 cut(s) | 546, 1544, 2387, 3344 |
| Eco147I | AGGCCT | 1 cut(s) | 781 |
| Eco24I | GRGCYC | 4 cut(s) | 590, 914, 1463, 3305 |
| Eco31I | GGTCTC | 3 cut(s) | 1005, 3734, 3927 |
| Eco47I | GGWCC | 4 cut(s) | 967, 1869, 3493, 3800 |
| Eco52I | CGGCCG | 1 cut(s) | 1388 |
| Eco53kI | GAGCTC | 1 cut(s) | 588 |
| Eco57I | CTGAAG | 2 cut(s) | 2031, 2318 |
| Eco81I | CCTNAGG | 1 cut(s) | 3672 |
| Eco88I | CYCGRG | 3 cut(s) | 161, 211, 1008 |
| Eco91I | GGTNACC | 1 cut(s) | 3613 |
| EcoICRI | GAGCTC | 1 cut(s) | 588 |
| EcoO109I | RGGNCCY | 3 cut(s) | 967, 1459, 1869 |
| EcoO65I | GGTNACC | 1 cut(s) | 3613 |
| EcoRII | CCWGG | 2 cut(s) | 1145, 3690 |
| EcoT14I | CCWWGG | 4 cut(s) | 546, 1544, 2387, 3344 |
| EcoT22I | ATGCAT | 2 cut(s) | 2093, 2207 |
| EcoT38I | GRGCYC | 4 cut(s) | 590, 914, 1463, 3305 |
| ErhI | CCWWGG | 4 cut(s) | 546, 1544, 2387, 3344 |
| Esp3I | CGTCTC | 1 cut(s) | 3953 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 2162, 2194, 2577, 2609 |
| FaqI | GGGAC | 4 cut(s) | 709, 980, 1855, 2119 |
| FauI | CCCGC | 1 cut(s) | 978 |
| FauNDI | CATATG | 1 cut(s) | 2649 |
| FbaI | TGATCA | 1 cut(s) | 1426 |
| FblI | GTMKAC | 2 cut(s) | 1469, 2907 |
| FriOI | GRGCYC | 4 cut(s) | 590, 914, 1463, 3305 |
| FspI | TGCGCA | 1 cut(s) | 657 |
| GlaI | GCGC | 2 cut(s) | 657, 3922 |
| GsaI | CCCAGC | 1 cut(s) | 2259 |
| GsuI | CTGGAG | 2 cut(s) | 857, 2287 |
| HgaI | GACGC | 1 cut(s) | 3554 |
| HhaI | GCGC | 2 cut(s) | 658, 3923 |
| Hin1I | GRCGYC | 1 cut(s) | 3565 |
| Hin6I | GCGC | 2 cut(s) | 656, 3921 |
| HinP1I | GCGC | 2 cut(s) | 656, 3921 |
| HincII | GTYRAC | 1 cut(s) | 2908 |
| HindII | GTYRAC | 1 cut(s) | 2908 |
| HindIII | AAGCTT | 1 cut(s) | 1617 |
| Hpy166II | GTNNAC | 9 cut(s) | 93, 582, 1470, 1814, 1879, 2908, 3098, 3100, 3803 |
| Hpy8I | GTNNAC | 9 cut(s) | 93, 582, 1470, 1814, 1879, 2908, 3098, 3100, 3803 |
| Hpy99I | CGWCG | 4 cut(s) | 1275, 3725, 3876, 3932 |
| HpyCH4III | ACNGT | 8 cut(s) | 562, 607, 1171, 2528, 3060, 3409, 3619, 3725 |
| HpyCH4IV | ACGT | 5 cut(s) | 951, 1810, 2951, 3216, 3371 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 1120, 1642, 2179, 2416, 2569, 3395 |
| HpySE526I | ACGT | 5 cut(s) | 951, 1810, 2951, 3216, 3371 |
| Hsp92I | GRCGYC | 1 cut(s) | 3565 |
| HspAI | GCGC | 2 cut(s) | 656, 3921 |
| KflI | GGGWCCC | 1 cut(s) | 967 |
| Kpn2I | TCCGGA | 3 cut(s) | 1819, 3709, 3807 |
| KroI | GCCGGC | 2 cut(s) | 522, 1390 |
| KroNI | GCCGGC | 2 cut(s) | 524, 1392 |
| Ksp22I | TGATCA | 1 cut(s) | 1426 |
| KspI | CCGCGG | 1 cut(s) | 1634 |
| Lsp1109I | GCAGC | 8 cut(s) | 529, 1126, 1752, 2132, 2614, 2688, 3218, 3874 |
| LweI | GCATC | 4 cut(s) | 643, 2078, 2826, 3178 |
| MaeII | ACGT | 5 cut(s) | 951, 1810, 2951, 3216, 3371 |
| MbiI | CCGCTC | 1 cut(s) | 1408 |
| MflI | RGATCY | 7 cut(s) | 25, 72, 1318, 1536, 1734, 2933, 3892 |
| MhlI | GDGCHC | 6 cut(s) | 590, 914, 1463, 1816, 3001, 3305 |
| MlsI | TGGCCA | 1 cut(s) | 288 |
| MluNI | TGGCCA | 1 cut(s) | 288 |
| MlyI | GAGTC | 7 cut(s) | 94, 292, 1232, 1964, 2702, 3478, 3925 |
| MmeI | TCCRAC | 7 cut(s) | 392, 699, 822, 859, 926, 3852, 3895 |
| Mox20I | TGGCCA | 1 cut(s) | 288 |
| Mph1103I | ATGCAT | 2 cut(s) | 2093, 2207 |
| MreI | CGCCGGCG | 1 cut(s) | 522 |
| MroI | TCCGGA | 3 cut(s) | 1819, 3709, 3807 |
| MroNI | GCCGGC | 2 cut(s) | 522, 1390 |
| MroXI | GAANNNNTTC | 1 cut(s) | 467 |
| MscI | TGGCCA | 1 cut(s) | 288 |
| MslI | CAYNNNNRTG | 4 cut(s) | 1128, 1607, 2652, 3793 |
| Msp20I | TGGCCA | 1 cut(s) | 288 |
| MspA1I | CMGCKG | 3 cut(s) | 542, 1324, 1633 |
| MspCI | CTTAAG | 1 cut(s) | 386 |
| MspR9I | CCNGG | 5 cut(s) | 281, 1147, 1739, 3579, 3692 |
| MvaI | CCWGG | 2 cut(s) | 1147, 3692 |
| MvnI | CGCG | 3 cut(s) | 1633, 1928, 3921 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 1120, 1642, 2179, 2416, 2569, 3395 |
| NaeI | GCCGGC | 2 cut(s) | 524, 1392 |
| NciI | CCSGG | 3 cut(s) | 281, 1739, 3579 |
| NcoI | CCATGG | 1 cut(s) | 3344 |
| NdeI | CATATG | 1 cut(s) | 2649 |
| NgoMIV | GCCGGC | 2 cut(s) | 522, 1390 |
| NheI | GCTAGC | 1 cut(s) | 3607 |
| NmuCI | GTSAC | 8 cut(s) | 115, 156, 562, 1600, 1987, 3217, 3409, 3845 |
| NsbI | TGCGCA | 1 cut(s) | 657 |
| NsiI | ATGCAT | 2 cut(s) | 2093, 2207 |
| NspI | RCATGY | 3 cut(s) | 702, 2708, 3597 |
| NspV | TTCGAA | 2 cut(s) | 471, 1066 |
| PaeI | GCATGC | 1 cut(s) | 2708 |
| PaeR7I | CTCGAG | 1 cut(s) | 161 |
| PaqCI | CACCTGC | 1 cut(s) | 1596 |
| PceI | AGGCCT | 1 cut(s) | 781 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 111 |
| PdiI | GCCGGC | 2 cut(s) | 524, 1392 |
| PdmI | GAANNNNTTC | 1 cut(s) | 467 |
| PfeI | GAWTC | 5 cut(s) | 14, 806, 3070, 3706, 3899 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 2891 |
| PfoI | TCCNGGA | 2 cut(s) | 1737, 3690 |
| PleI | GAGTC | 7 cut(s) | 93, 292, 1231, 1964, 2701, 3477, 3924 |
| PpsI | GAGTC | 7 cut(s) | 93, 292, 1231, 1964, 2701, 3477, 3924 |
| Ppu21I | YACGTR | 1 cut(s) | 3372 |
| PpuMI | RGGWCCY | 2 cut(s) | 967, 1869 |
| PshAI | GACNNNNGTC | 1 cut(s) | 3726 |
| PshBI | ATTAAT | 2 cut(s) | 671, 1449 |
| PsiI | TTATAA | 1 cut(s) | 2424 |
| Psp124BI | GAGCTC | 1 cut(s) | 590 |
| Psp5II | RGGWCCY | 2 cut(s) | 967, 1869 |
| Psp6I | CCWGG | 2 cut(s) | 1145, 3690 |
| PspEI | GGTNACC | 1 cut(s) | 3613 |
| PspFI | CCCAGC | 1 cut(s) | 2255 |
| PspGI | CCWGG | 2 cut(s) | 1145, 3690 |
| PspOMI | GGGCCC | 1 cut(s) | 1459 |
| PspPI | GGNCC | 9 cut(s) | 739, 967, 1177, 1459, 1460, 1574, 1869, 3493, 3800 |
| PspPPI | RGGWCCY | 2 cut(s) | 967, 1869 |
| PstI | CTGCAG | 2 cut(s) | 2632, 3892 |
| PstNI | CAGNNNCTG | 2 cut(s) | 439, 3896 |
| PsuI | RGATCY | 7 cut(s) | 25, 72, 1318, 1536, 1734, 2933, 3892 |
| PvuII | CAGCTG | 1 cut(s) | 542 |
| RsaI | GTAC | 7 cut(s) | 453, 488, 754, 1780, 3099, 3374, 3785 |
| RsaNI | GTAC | 7 cut(s) | 452, 487, 753, 1779, 3098, 3373, 3784 |
| RseI | CAYNNNNRTG | 4 cut(s) | 1128, 1607, 2652, 3793 |
| SacI | GAGCTC | 1 cut(s) | 590 |
| SacII | CCGCGG | 1 cut(s) | 1634 |
| SalI | GTCGAC | 1 cut(s) | 2906 |
| Sau96I | GGNCC | 9 cut(s) | 739, 967, 1177, 1459, 1460, 1574, 1869, 3493, 3800 |
| ScaI | AGTACT | 1 cut(s) | 3785 |
| SchI | GAGTC | 7 cut(s) | 94, 292, 1232, 1964, 2702, 3478, 3925 |
| ScrFI | CCNGG | 5 cut(s) | 281, 1147, 1739, 3579, 3692 |
| SduI | GDGCHC | 6 cut(s) | 590, 914, 1463, 1816, 3001, 3305 |
| SfaNI | GCATC | 4 cut(s) | 643, 2078, 2826, 3178 |
| SfcI | CTRYAG | 4 cut(s) | 603, 2628, 3269, 3888 |
| Sfr274I | CTCGAG | 1 cut(s) | 161 |
| Sfr303I | CCGCGG | 1 cut(s) | 1634 |
| SfuI | TTCGAA | 2 cut(s) | 471, 1066 |
| SgrAI | CRCCGGYG | 1 cut(s) | 522 |
| SgrBI | CCGCGG | 1 cut(s) | 1634 |
| SinI | GGWCC | 4 cut(s) | 967, 1869, 3493, 3800 |
| SlaI | CTCGAG | 1 cut(s) | 161 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 1128, 1607, 2652, 3793 |
| SmlI | CTYRAG | 6 cut(s) | 161, 386, 988, 1001, 3298, 3338 |
| SmoI | CTYRAG | 6 cut(s) | 161, 386, 988, 1001, 3298, 3338 |
| SphI | GCATGC | 1 cut(s) | 2708 |
| SseBI | AGGCCT | 1 cut(s) | 781 |
| SspI | AATATT | 1 cut(s) | 2027 |
| SstI | GAGCTC | 1 cut(s) | 590 |
| StuI | AGGCCT | 1 cut(s) | 781 |
| StyD4I | CCNGG | 5 cut(s) | 279, 1145, 1737, 3577, 3690 |
| StyI | CCWWGG | 4 cut(s) | 546, 1544, 2387, 3344 |
| TaaI | ACNGT | 8 cut(s) | 562, 607, 1171, 2528, 3060, 3409, 3619, 3725 |
| TaiI | ACGT | 5 cut(s) | 954, 1813, 2954, 3219, 3374 |
| TatI | WGTACW | 4 cut(s) | 451, 1778, 3097, 3783 |
| TauI | GCSGC | 3 cut(s) | 1397, 1633, 1636 |
| TfiI | GAWTC | 5 cut(s) | 14, 806, 3070, 3706, 3899 |
| TseFI | GTSAC | 8 cut(s) | 115, 156, 562, 1600, 1987, 3217, 3409, 3845 |
| TseI | GCWGC | 8 cut(s) | 542, 1114, 1765, 2120, 2627, 2701, 3206, 3887 |
| Tsp45I | GTSAC | 8 cut(s) | 115, 156, 562, 1600, 1987, 3217, 3409, 3845 |
| TspGWI | ACGGA | 4 cut(s) | 78, 504, 581, 3945 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 2891 |
| Vha464I | CTTAAG | 1 cut(s) | 386 |
| VneI | GTGCAC | 1 cut(s) | 1812 |
| VpaK11BI | GGWCC | 4 cut(s) | 967, 1869, 3493, 3800 |
| VspI | ATTAAT | 2 cut(s) | 671, 1449 |
| XapI | RAATTY | 5 cut(s) | 166, 2244, 2289, 2986, 3482 |
| XbaI | TCTAGA | 1 cut(s) | 22 |
| XceI | RCATGY | 3 cut(s) | 702, 2708, 3597 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 264, 1470 |
| XhoI | CTCGAG | 1 cut(s) | 161 |
| XmiI | GTMKAC | 2 cut(s) | 1469, 2907 |
| XmnI | GAANNNNTTC | 1 cut(s) | 467 |
| ZrmI | AGTACT | 1 cut(s) | 3785 |
| Zsp2I | ATGCAT | 2 cut(s) | 2093, 2207 |