Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 702 |
| AarI | CACCTGC | 1 cut(s) | 410 |
| Acc36I | ACCTGC | 1 cut(s) | 410 |
| AccI | GTMKAC | 1 cut(s) | 727 |
| AccII | CGCG | 1 cut(s) | 63 |
| AciI | CCGC | 1 cut(s) | 937 |
| AclI | AACGTT | 1 cut(s) | 15 |
| AcoI | YGGCCR | 1 cut(s) | 840 |
| AcsI | RAATTY | 2 cut(s) | 97, 234 |
| AfaI | GTAC | 1 cut(s) | 874 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 193, 682, 803 |
| AgsI | TTSAA | 6 cut(s) | 7, 88, 164, 430, 743, 779 |
| AleI | CACNNNNGTG | 2 cut(s) | 323, 471 |
| AloI | GAACNNNNNNTCC | 4 cut(s) | 244, 276, 610, 642 |
| AluBI | AGCT | 4 cut(s) | 160, 386, 479, 597 |
| AluI | AGCT | 4 cut(s) | 160, 386, 479, 597 |
| Alw26I | GTCTC | 2 cut(s) | 47, 980 |
| AoxI | GGCC | 2 cut(s) | 520, 840 |
| ApeKI | GCWGC | 7 cut(s) | 217, 338, 386, 476, 479, 491, 940 |
| ApoI | RAATTY | 2 cut(s) | 97, 234 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 710 |
| AspA2I | CCTAGG | 1 cut(s) | 541 |
| AspLEI | GCGC | 2 cut(s) | 65, 217 |
| AspS9I | GGNCC | 1 cut(s) | 200 |
| AsuC2I | CCSGG | 2 cut(s) | 302, 460 |
| AsuHPI | GGTGA | 3 cut(s) | 359, 392, 434 |
| AvaII | GGWCC | 1 cut(s) | 200 |
| AvrII | CCTAGG | 1 cut(s) | 541 |
| BaeGI | GKGCMC | 2 cut(s) | 177, 382 |
| BalI | TGGCCA | 1 cut(s) | 842 |
| BauI | CACGAG | 1 cut(s) | 471 |
| BbsI | GAAGAC | 1 cut(s) | 456 |
| BbvI | GCAGC | 7 cut(s) | 204, 350, 373, 466, 478, 488, 952 |
| BccI | CCATC | 1 cut(s) | 139 |
| BceAI | ACGGC | 1 cut(s) | 25 |
| BcnI | CCSGG | 2 cut(s) | 302, 460 |
| BcoDI | GTCTC | 2 cut(s) | 47, 980 |
| BfaI | CTAG | 5 cut(s) | 20, 122, 383, 542, 1009 |
| BfmI | CTRYAG | 2 cut(s) | 387, 798 |
| BfuAI | ACCTGC | 1 cut(s) | 410 |
| BisI | GCNGC | 8 cut(s) | 218, 339, 387, 477, 480, 492, 938, 941 |
| BlnI | CCTAGG | 1 cut(s) | 541 |
| BlsI | GCNGC | 8 cut(s) | 219, 340, 388, 478, 481, 493, 939, 942 |
| Bme1390I | CCNGG | 2 cut(s) | 302, 460 |
| Bme18I | GGWCC | 1 cut(s) | 200 |
| BmgT120I | GGNCC | 1 cut(s) | 200 |
| BmiI | GGNNCC | 1 cut(s) | 201 |
| BmrFI | CCNGG | 2 cut(s) | 302, 460 |
| BmsI | GCATC | 1 cut(s) | 152 |
| BpiI | GAAGAC | 1 cut(s) | 456 |
| BpuMI | CCSGG | 2 cut(s) | 302, 460 |
| Bsa29I | ATCGAT | 1 cut(s) | 72 |
| BsaJI | CCNNGG | 4 cut(s) | 292, 407, 459, 541 |
| BsaWI | WCCGGW | 1 cut(s) | 952 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 244, 274, 963, 993 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 193, 682, 803 |
| Bse1I | ACTGG | 1 cut(s) | 850 |
| Bse3DI | GCAATG | 2 cut(s) | 670, 869 |
| BseCI | ATCGAT | 1 cut(s) | 72 |
| BseDI | CCNNGG | 4 cut(s) | 292, 407, 459, 541 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 193, 682, 803 |
| BseMI | GCAATG | 2 cut(s) | 670, 869 |
| BseMII | CTCAG | 2 cut(s) | 678, 683 |
| BseNI | ACTGG | 1 cut(s) | 850 |
| BseRI | GAGGAG | 4 cut(s) | 209, 252, 968, 980 |
| BseSI | GKGCMC | 2 cut(s) | 177, 382 |
| BseXI | GCAGC | 7 cut(s) | 204, 350, 373, 466, 478, 488, 952 |
| BseYI | CCCAGC | 1 cut(s) | 126 |
| BsgI | GTGCAG | 1 cut(s) | 495 |
| Bsh1236I | CGCG | 1 cut(s) | 63 |
| BshFI | GGCC | 2 cut(s) | 522, 842 |
| BshVI | ATCGAT | 1 cut(s) | 72 |
| BsiSI | CCGG | 4 cut(s) | 302, 459, 499, 953 |
| BslFI | GGGAC | 3 cut(s) | 170, 213, 477 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 193, 682, 803 |
| BsmAI | GTCTC | 2 cut(s) | 47, 980 |
| BsmBI | CGTCTC | 1 cut(s) | 980 |
| BsmFI | GGGAC | 3 cut(s) | 170, 213, 477 |
| BsnI | GGCC | 2 cut(s) | 522, 842 |
| Bsp1286I | GDGCHC | 2 cut(s) | 177, 382 |
| Bsp143I | GATC | 3 cut(s) | 73, 102, 244 |
| BspACI | CCGC | 1 cut(s) | 937 |
| BspANI | GGCC | 2 cut(s) | 522, 842 |
| BspCNI | CTCAG | 2 cut(s) | 677, 684 |
| BspDI | ATCGAT | 1 cut(s) | 72 |
| BspFNI | CGCG | 1 cut(s) | 63 |
| BspHI | TCATGA | 1 cut(s) | 190 |
| BspLI | GGNNCC | 1 cut(s) | 201 |
| BspMAI | CTGCAG | 1 cut(s) | 391 |
| BspMI | ACCTGC | 1 cut(s) | 410 |
| BsrDI | GCAATG | 2 cut(s) | 670, 869 |
| BsrI | ACTGG | 1 cut(s) | 850 |
| BssECI | CCNNGG | 4 cut(s) | 292, 407, 459, 541 |
| BssMI | GATC | 3 cut(s) | 73, 102, 244 |
| BssSI | CACGAG | 1 cut(s) | 471 |
| BssT1I | CCWWGG | 2 cut(s) | 407, 541 |
| Bst2BI | CACGAG | 1 cut(s) | 471 |
| Bst4CI | ACNGT | 4 cut(s) | 230, 643, 802, 872 |
| Bst6I | CTCTTC | 1 cut(s) | 738 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 149 |
| BstC8I | GCNNGC | 1 cut(s) | 504 |
| BstDEI | CTNAG | 4 cut(s) | 248, 576, 664, 692 |
| BstEII | GGTNACC | 1 cut(s) | 296 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 801 |
| BstFNI | CGCG | 1 cut(s) | 63 |
| BstHHI | GCGC | 2 cut(s) | 65, 217 |
| BstKTI | GATC | 3 cut(s) | 76, 105, 247 |
| BstMAI | GTCTC | 2 cut(s) | 47, 980 |
| BstMBI | GATC | 3 cut(s) | 73, 102, 244 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 149, 330, 386, 488 |
| BstPI | GGTNACC | 1 cut(s) | 296 |
| BstSCI | CCNGG | 2 cut(s) | 300, 458 |
| BstSFI | CTRYAG | 2 cut(s) | 387, 798 |
| BstSLI | GKGCMC | 2 cut(s) | 177, 382 |
| BstUI | CGCG | 1 cut(s) | 63 |
| BstV1I | GCAGC | 7 cut(s) | 204, 350, 373, 466, 478, 488, 952 |
| BstV2I | GAAGAC | 1 cut(s) | 456 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 685 |
| Bsu15I | ATCGAT | 1 cut(s) | 72 |
| BsuRI | GGCC | 2 cut(s) | 522, 842 |
| BsuTUI | ATCGAT | 1 cut(s) | 72 |
| BtgZI | GCGATG | 1 cut(s) | 521 |
| BtsIMutI | CAGTG | 3 cut(s) | 235, 843, 868 |
| BveI | ACCTGC | 1 cut(s) | 410 |
| Cac8I | GCNNGC | 1 cut(s) | 504 |
| CciI | TCATGA | 1 cut(s) | 190 |
| CfoI | GCGC | 2 cut(s) | 65, 217 |
| Cfr13I | GGNCC | 1 cut(s) | 200 |
| ClaI | ATCGAT | 1 cut(s) | 72 |
| CseI | GACGC | 1 cut(s) | 172 |
| Csp6I | GTAC | 1 cut(s) | 873 |
| CviAII | CATG | 9 cut(s) | 191, 206, 239, 415, 439, 532, 622, 934, 983 |
| CviQI | GTAC | 1 cut(s) | 873 |
| DdeI | CTNAG | 4 cut(s) | 248, 576, 664, 692 |
| DpnI | GATC | 3 cut(s) | 75, 104, 246 |
| DpnII | GATC | 3 cut(s) | 73, 102, 244 |
| EaeI | YGGCCR | 1 cut(s) | 840 |
| Eam1104I | CTCTTC | 1 cut(s) | 738 |
| EarI | CTCTTC | 1 cut(s) | 738 |
| Eco130I | CCWWGG | 2 cut(s) | 407, 541 |
| Eco32I | GATATC | 1 cut(s) | 931 |
| Eco47I | GGWCC | 1 cut(s) | 200 |
| Eco91I | GGTNACC | 1 cut(s) | 296 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 801 |
| EcoO65I | GGTNACC | 1 cut(s) | 296 |
| EcoRV | GATATC | 1 cut(s) | 931 |
| EcoT14I | CCWWGG | 2 cut(s) | 407, 541 |
| ErhI | CCWWGG | 2 cut(s) | 407, 541 |
| Esp3I | CGTCTC | 1 cut(s) | 980 |
| FaeI | CATG | 9 cut(s) | 194, 209, 242, 418, 442, 535, 625, 937, 986 |
| FaqI | GGGAC | 3 cut(s) | 170, 213, 477 |
| FatI | CATG | 9 cut(s) | 190, 205, 238, 414, 438, 531, 621, 933, 982 |
| FauNDI | CATATG | 1 cut(s) | 179 |
| FblI | GTMKAC | 1 cut(s) | 727 |
| Fnu4HI | GCNGC | 8 cut(s) | 218, 339, 387, 477, 480, 492, 938, 941 |
| Fsp4HI | GCNGC | 8 cut(s) | 218, 339, 387, 477, 480, 492, 938, 941 |
| FspBI | CTAG | 5 cut(s) | 20, 122, 383, 542, 1009 |
| GlaI | GCGC | 2 cut(s) | 64, 216 |
| GluI | GCNGC | 8 cut(s) | 218, 339, 387, 477, 480, 492, 938, 941 |
| GsaI | CCCAGC | 1 cut(s) | 130 |
| HaeIII | GGCC | 2 cut(s) | 522, 842 |
| HapII | CCGG | 4 cut(s) | 302, 459, 499, 953 |
| HgaI | GACGC | 1 cut(s) | 172 |
| HhaI | GCGC | 2 cut(s) | 65, 217 |
| Hin1II | CATG | 9 cut(s) | 194, 209, 242, 418, 442, 535, 625, 937, 986 |
| Hin6I | GCGC | 2 cut(s) | 63, 215 |
| HinP1I | GCGC | 2 cut(s) | 63, 215 |
| HincII | GTYRAC | 1 cut(s) | 728 |
| HindII | GTYRAC | 1 cut(s) | 728 |
| HindIII | AAGCTT | 2 cut(s) | 158, 595 |
| HinfI | GANTC | 3 cut(s) | 55, 662, 732 |
| HpaII | CCGG | 4 cut(s) | 302, 459, 499, 953 |
| HphI | GGTGA | 3 cut(s) | 359, 392, 434 |
| Hpy166II | GTNNAC | 5 cut(s) | 350, 529, 555, 573, 728 |
| Hpy188I | TCNGA | 4 cut(s) | 617, 667, 716, 737 |
| Hpy188III | TCNNGA | 2 cut(s) | 25, 191 |
| Hpy8I | GTNNAC | 5 cut(s) | 350, 529, 555, 573, 728 |
| Hpy99I | CGWCG | 1 cut(s) | 732 |
| HpyAV | CCTTC | 1 cut(s) | 413 |
| HpyCH4III | ACNGT | 4 cut(s) | 230, 643, 802, 872 |
| HpyCH4IV | ACGT | 3 cut(s) | 15, 352, 973 |
| HpyCH4V | TGCA | 9 cut(s) | 33, 48, 143, 152, 338, 389, 476, 862, 950 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 149, 330, 386, 488 |
| HpyF3I | CTNAG | 4 cut(s) | 248, 576, 664, 692 |
| HpySE526I | ACGT | 3 cut(s) | 15, 352, 973 |
| Hsp92II | CATG | 9 cut(s) | 194, 209, 242, 418, 442, 535, 625, 937, 986 |
| HspAI | GCGC | 2 cut(s) | 63, 215 |
| Kzo9I | GATC | 3 cut(s) | 73, 102, 244 |
| LmnI | GCTCC | 2 cut(s) | 487, 967 |
| Lsp1109I | GCAGC | 7 cut(s) | 204, 350, 373, 466, 478, 488, 952 |
| LweI | GCATC | 1 cut(s) | 152 |
| MaeI | CTAG | 5 cut(s) | 20, 122, 383, 542, 1009 |
| MaeII | ACGT | 3 cut(s) | 15, 352, 973 |
| MaeIII | GTNAC | 3 cut(s) | 296, 398, 422 |
| MalI | GATC | 3 cut(s) | 75, 104, 246 |
| MboI | GATC | 3 cut(s) | 73, 102, 244 |
| MboII | GAAGA | 3 cut(s) | 404, 461, 755 |
| MfeI | CAATTG | 1 cut(s) | 998 |
| MhlI | GDGCHC | 2 cut(s) | 177, 382 |
| MlsI | TGGCCA | 1 cut(s) | 842 |
| MluCI | AATT | 8 cut(s) | 28, 97, 164, 234, 784, 899, 920, 998 |
| MluNI | TGGCCA | 1 cut(s) | 842 |
| MlyI | GAGTC | 2 cut(s) | 49, 656 |
| Mox20I | TGGCCA | 1 cut(s) | 842 |
| MroXI | GAANNNNTTC | 1 cut(s) | 710 |
| MscI | TGGCCA | 1 cut(s) | 842 |
| MseI | TTAA | 1 cut(s) | 285 |
| MslI | CAYNNNNRTG | 4 cut(s) | 273, 323, 471, 683 |
| Msp20I | TGGCCA | 1 cut(s) | 842 |
| MspA1I | CMGCKG | 1 cut(s) | 479 |
| MspI | CCGG | 4 cut(s) | 302, 459, 499, 953 |
| MspR9I | CCNGG | 2 cut(s) | 302, 460 |
| MunI | CAATTG | 1 cut(s) | 998 |
| MvnI | CGCG | 1 cut(s) | 63 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 149, 330, 386, 488 |
| NciI | CCSGG | 2 cut(s) | 302, 460 |
| NdeI | CATATG | 1 cut(s) | 179 |
| NdeII | GATC | 3 cut(s) | 73, 102, 244 |
| NlaIII | CATG | 9 cut(s) | 194, 209, 242, 418, 442, 535, 625, 937, 986 |
| NlaIV | GGNNCC | 1 cut(s) | 201 |
| NmuCI | GTSAC | 2 cut(s) | 398, 422 |
| OliI | CACNNNNGTG | 2 cut(s) | 323, 471 |
| PagI | TCATGA | 1 cut(s) | 190 |
| PaqCI | CACCTGC | 1 cut(s) | 410 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 733 |
| PdmI | GAANNNNTTC | 1 cut(s) | 710 |
| PfeI | GAWTC | 1 cut(s) | 732 |
| PflFI | GACNNNGTC | 1 cut(s) | 993 |
| PkrI | GCNGC | 8 cut(s) | 219, 340, 388, 478, 481, 493, 939, 942 |
| PleI | GAGTC | 2 cut(s) | 49, 656 |
| PpsI | GAGTC | 2 cut(s) | 49, 656 |
| PsiI | TTATAA | 1 cut(s) | 702 |
| Psp1406I | AACGTT | 1 cut(s) | 15 |
| PspEI | GGTNACC | 1 cut(s) | 296 |
| PspFI | CCCAGC | 1 cut(s) | 126 |
| PspN4I | GGNNCC | 1 cut(s) | 201 |
| PspPI | GGNCC | 1 cut(s) | 200 |
| PstI | CTGCAG | 1 cut(s) | 391 |
| PsyI | GACNNNGTC | 1 cut(s) | 993 |
| PvuII | CAGCTG | 1 cut(s) | 479 |
| RsaI | GTAC | 1 cut(s) | 874 |
| RsaNI | GTAC | 1 cut(s) | 873 |
| RseI | CAYNNNNRTG | 4 cut(s) | 273, 323, 471, 683 |
| SalI | GTCGAC | 1 cut(s) | 726 |
| SaqAI | TTAA | 1 cut(s) | 285 |
| SatI | GCNGC | 8 cut(s) | 218, 339, 387, 477, 480, 492, 938, 941 |
| Sau3AI | GATC | 3 cut(s) | 73, 102, 244 |
| Sau96I | GGNCC | 1 cut(s) | 200 |
| SchI | GAGTC | 2 cut(s) | 49, 656 |
| ScrFI | CCNGG | 2 cut(s) | 302, 460 |
| SduI | GDGCHC | 2 cut(s) | 177, 382 |
| SfaNI | GCATC | 1 cut(s) | 152 |
| SfcI | CTRYAG | 2 cut(s) | 387, 798 |
| SinI | GGWCC | 1 cut(s) | 200 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 273, 323, 471, 683 |
| Sse9I | AATT | 8 cut(s) | 28, 97, 164, 234, 784, 899, 920, 998 |
| SsiI | CCGC | 1 cut(s) | 937 |
| SspMI | CTAG | 5 cut(s) | 20, 122, 383, 542, 1009 |
| StyD4I | CCNGG | 2 cut(s) | 300, 458 |
| StyI | CCWWGG | 2 cut(s) | 407, 541 |
| TaaI | ACNGT | 4 cut(s) | 230, 643, 802, 872 |
| TaiI | ACGT | 3 cut(s) | 18, 355, 976 |
| TaqI | TCGA | 2 cut(s) | 72, 727 |
| TasI | AATT | 8 cut(s) | 28, 97, 164, 234, 784, 899, 920, 998 |
| TatI | WGTACW | 1 cut(s) | 872 |
| TauI | GCSGC | 1 cut(s) | 940 |
| TfiI | GAWTC | 1 cut(s) | 732 |
| Tru1I | TTAA | 1 cut(s) | 285 |
| Tru9I | TTAA | 1 cut(s) | 285 |
| TscAI | CASTG | 3 cut(s) | 235, 850, 875 |
| TseFI | GTSAC | 2 cut(s) | 398, 422 |
| TseI | GCWGC | 7 cut(s) | 217, 338, 386, 476, 479, 491, 940 |
| Tsp45I | GTSAC | 2 cut(s) | 398, 422 |
| TspDTI | ATGAA | 3 cut(s) | 227, 447, 771 |
| TspRI | CASTG | 3 cut(s) | 235, 850, 875 |
| Tth111I | GACNNNGTC | 1 cut(s) | 993 |
| VpaK11BI | GGWCC | 1 cut(s) | 200 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 801 |
| XapI | RAATTY | 2 cut(s) | 97, 234 |
| XmaJI | CCTAGG | 1 cut(s) | 541 |
| XmiI | GTMKAC | 1 cut(s) | 727 |
| XmnI | GAANNNNTTC | 1 cut(s) | 710 |
| XspI | CTAG | 5 cut(s) | 20, 122, 383, 542, 1009 |