ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccII | CGCG | 1 cut(s) | 64 |
| AciI | CCGC | 1 cut(s) | 471 |
| AclI | AACGTT | 1 cut(s) | 553 |
| AcoI | YGGCCR | 1 cut(s) | 367 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 323 |
| AflIII | ACRYGT | 1 cut(s) | 135 |
| AgsI | TTSAA | 5 cut(s) | 125, 299, 404, 434, 514 |
| AjnI | CCWGG | 1 cut(s) | 149 |
| AluBI | AGCT | 2 cut(s) | 20, 614 |
| AluI | AGCT | 2 cut(s) | 20, 614 |
| Alw26I | GTCTC | 4 cut(s) | 126, 321, 490, 530 |
| AoxI | GGCC | 1 cut(s) | 367 |
| ApeKI | GCWGC | 1 cut(s) | 337 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 35, 67 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 8, 613 |
| AspA2I | CCTAGG | 1 cut(s) | 239 |
| AspLEI | GCGC | 1 cut(s) | 64 |
| AsuC2I | CCSGG | 1 cut(s) | 278 |
| AsuHPI | GGTGA | 1 cut(s) | 593 |
| AsuII | TTCGAA | 1 cut(s) | 617 |
| AvrII | CCTAGG | 1 cut(s) | 239 |
| BbvI | GCAGC | 1 cut(s) | 349 |
| BccI | CCATC | 1 cut(s) | 612 |
| BciT130I | CCWGG | 1 cut(s) | 151 |
| BciVI | GTATCC | 1 cut(s) | 150 |
| BcnI | CCSGG | 1 cut(s) | 278 |
| BcoDI | GTCTC | 4 cut(s) | 126, 321, 490, 530 |
| BfaI | CTAG | 2 cut(s) | 240, 443 |
| BfuI | GTATCC | 1 cut(s) | 150 |
| BisI | GCNGC | 2 cut(s) | 338, 471 |
| BlnI | CCTAGG | 1 cut(s) | 239 |
| BlpI | GCTNAGC | 1 cut(s) | 474 |
| BlsI | GCNGC | 2 cut(s) | 339, 472 |
| Bme1390I | CCNGG | 2 cut(s) | 151, 278 |
| BmiI | GGNNCC | 1 cut(s) | 635 |
| BmrFI | CCNGG | 2 cut(s) | 151, 278 |
| BmsI | GCATC | 2 cut(s) | 238, 300 |
| BoxI | GACNNNNGTC | 1 cut(s) | 186 |
| BpmI | CTGGAG | 2 cut(s) | 133, 345 |
| Bpu10I | CCTNAGC | 1 cut(s) | 288 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 474 |
| Bpu14I | TTCGAA | 1 cut(s) | 617 |
| BpuMI | CCSGG | 1 cut(s) | 278 |
| BsaBI | GATNNNNATC | 1 cut(s) | 704 |
| BsaJI | CCNNGG | 3 cut(s) | 150, 224, 239 |
| BsaWI | WCCGGW | 2 cut(s) | 392, 507 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 323 |
| Bse118I | RCCGGY | 1 cut(s) | 365 |
| Bse8I | GATNNNNATC | 1 cut(s) | 704 |
| BseBI | CCWGG | 1 cut(s) | 151 |
| BseDI | CCNNGG | 3 cut(s) | 150, 224, 239 |
| BseGI | GGATG | 2 cut(s) | 315, 679 |
| BseJI | GATNNNNATC | 1 cut(s) | 704 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 323 |
| BseMII | CTCAG | 2 cut(s) | 465, 648 |
| BseRI | GAGGAG | 1 cut(s) | 272 |
| BseXI | GCAGC | 1 cut(s) | 349 |
| Bsh1236I | CGCG | 1 cut(s) | 64 |
| BshFI | GGCC | 1 cut(s) | 369 |
| BsiSI | CCGG | 4 cut(s) | 278, 366, 393, 508 |
| BslFI | GGGAC | 1 cut(s) | 174 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 323 |
| BsmAI | GTCTC | 4 cut(s) | 126, 321, 490, 530 |
| BsmFI | GGGAC | 1 cut(s) | 174 |
| BsnI | GGCC | 1 cut(s) | 369 |
| Bsp119I | TTCGAA | 1 cut(s) | 617 |
| Bsp143I | GATC | 4 cut(s) | 34, 204, 583, 705 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 474 |
| BspACI | CCGC | 1 cut(s) | 471 |
| BspANI | GGCC | 1 cut(s) | 369 |
| BspCNI | CTCAG | 2 cut(s) | 466, 649 |
| BspFNI | CGCG | 1 cut(s) | 64 |
| BspLI | GGNNCC | 1 cut(s) | 635 |
| BspQI | GCTCTTC | 1 cut(s) | 604 |
| BspT104I | TTCGAA | 1 cut(s) | 617 |
| BsrFI | RCCGGY | 1 cut(s) | 365 |
| BssAI | RCCGGY | 1 cut(s) | 365 |
| BssECI | CCNNGG | 3 cut(s) | 150, 224, 239 |
| BssMI | GATC | 4 cut(s) | 34, 204, 583, 705 |
| BssT1I | CCWWGG | 2 cut(s) | 224, 239 |
| Bst2UI | CCWGG | 1 cut(s) | 151 |
| Bst4CI | ACNGT | 2 cut(s) | 32, 284 |
| Bst6I | CTCTTC | 2 cut(s) | 488, 604 |
| BstBI | TTCGAA | 1 cut(s) | 617 |
| BstC8I | GCNNGC | 2 cut(s) | 18, 112 |
| BstDEI | CTNAG | 3 cut(s) | 288, 474, 657 |
| BstF5I | GGATG | 2 cut(s) | 315, 679 |
| BstFNI | CGCG | 1 cut(s) | 64 |
| BstHHI | GCGC | 1 cut(s) | 64 |
| BstKTI | GATC | 4 cut(s) | 37, 207, 586, 708 |
| BstMAI | GTCTC | 4 cut(s) | 126, 321, 490, 530 |
| BstMBI | GATC | 4 cut(s) | 34, 204, 583, 705 |
| BstNI | CCWGG | 1 cut(s) | 151 |
| BstNSI | RCATGY | 1 cut(s) | 139 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 186 |
| BstSCI | CCNGG | 2 cut(s) | 149, 276 |
| BstUI | CGCG | 1 cut(s) | 64 |
| BstV1I | GCAGC | 1 cut(s) | 349 |
| BsuI | GTATCC | 1 cut(s) | 150 |
| BsuRI | GGCC | 1 cut(s) | 369 |
| BtsCI | GGATG | 2 cut(s) | 315, 679 |
| BtsIMutI | CAGTG | 1 cut(s) | 654 |
| Cac8I | GCNNGC | 2 cut(s) | 18, 112 |
| CfoI | GCGC | 1 cut(s) | 64 |
| Cfr10I | RCCGGY | 1 cut(s) | 365 |
| CviAII | CATG | 4 cut(s) | 46, 72, 136, 334 |
| CviJI | RGCY | 8 cut(s) | 20, 110, 174, 268, 369, 596, 614, 649 |
| CviKI_1 | RGCY | 8 cut(s) | 20, 110, 174, 268, 369, 596, 614, 649 |
| DdeI | CTNAG | 3 cut(s) | 288, 474, 657 |
| DpnI | GATC | 4 cut(s) | 36, 206, 585, 707 |
| DpnII | GATC | 4 cut(s) | 34, 204, 583, 705 |
| EaeI | YGGCCR | 1 cut(s) | 367 |
| Eam1104I | CTCTTC | 2 cut(s) | 488, 604 |
| EarI | CTCTTC | 2 cut(s) | 488, 604 |
| Eco130I | CCWWGG | 2 cut(s) | 224, 239 |
| EcoRII | CCWGG | 1 cut(s) | 149 |
| EcoT14I | CCWWGG | 2 cut(s) | 224, 239 |
| ErhI | CCWWGG | 2 cut(s) | 224, 239 |
| FaeI | CATG | 4 cut(s) | 49, 75, 139, 337 |
| FaiI | YATR | 6 cut(s) | 47, 73, 137, 335, 363, 380 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 677, 709 |
| FaqI | GGGAC | 1 cut(s) | 174 |
| FatI | CATG | 4 cut(s) | 45, 71, 135, 333 |
| Fnu4HI | GCNGC | 2 cut(s) | 338, 471 |
| FokI | GGATG | 2 cut(s) | 322, 666 |
| Fsp4HI | GCNGC | 2 cut(s) | 338, 471 |
| FspBI | CTAG | 2 cut(s) | 240, 443 |
| GlaI | GCGC | 1 cut(s) | 63 |
| GluI | GCNGC | 2 cut(s) | 338, 471 |
| GsuI | CTGGAG | 2 cut(s) | 133, 345 |
| HaeIII | GGCC | 1 cut(s) | 369 |
| HapII | CCGG | 4 cut(s) | 278, 366, 393, 508 |
| HhaI | GCGC | 1 cut(s) | 64 |
| Hin1II | CATG | 4 cut(s) | 49, 75, 139, 337 |
| Hin6I | GCGC | 1 cut(s) | 62 |
| HinP1I | GCGC | 1 cut(s) | 62 |
| HincII | GTYRAC | 1 cut(s) | 28 |
| HindII | GTYRAC | 1 cut(s) | 28 |
| HinfI | GANTC | 5 cut(s) | 9, 329, 430, 561, 619 |
| HpaII | CCGG | 4 cut(s) | 278, 366, 393, 508 |
| HphI | GGTGA | 1 cut(s) | 593 |
| Hpy166II | GTNNAC | 3 cut(s) | 28, 440, 557 |
| Hpy188I | TCNGA | 3 cut(s) | 181, 213, 633 |
| Hpy188III | TCNNGA | 3 cut(s) | 41, 324, 558 |
| Hpy8I | GTNNAC | 3 cut(s) | 28, 440, 557 |
| HpyAV | CCTTC | 2 cut(s) | 572, 607 |
| HpyCH4III | ACNGT | 2 cut(s) | 32, 284 |
| HpyCH4IV | ACGT | 1 cut(s) | 553 |
| HpyCH4V | TGCA | 1 cut(s) | 337 |
| HpyF3I | CTNAG | 3 cut(s) | 288, 474, 657 |
| HpySE526I | ACGT | 1 cut(s) | 553 |
| Hsp92II | CATG | 4 cut(s) | 49, 75, 139, 337 |
| HspAI | GCGC | 1 cut(s) | 62 |
| Kzo9I | GATC | 4 cut(s) | 34, 204, 583, 705 |
| LguI | GCTCTTC | 1 cut(s) | 604 |
| LmnI | GCTCC | 2 cut(s) | 59, 318 |
| LpnPI | CCDG | 9 cut(s) | 86, 136, 163, 291, 309, 379, 406, 521, 648 |
| Lsp1109I | GCAGC | 1 cut(s) | 349 |
| LweI | GCATC | 2 cut(s) | 238, 300 |
| MaeI | CTAG | 2 cut(s) | 240, 443 |
| MaeII | ACGT | 1 cut(s) | 553 |
| MaeIII | GTNAC | 2 cut(s) | 519, 587 |
| MalI | GATC | 4 cut(s) | 36, 206, 585, 707 |
| MboI | GATC | 4 cut(s) | 34, 204, 583, 705 |
| MboII | GAAGA | 4 cut(s) | 29, 505, 592, 621 |
| MluCI | AATT | 4 cut(s) | 198, 219, 503, 639 |
| MlyI | GAGTC | 2 cut(s) | 323, 555 |
| MmeI | TCCRAC | 2 cut(s) | 365, 611 |
| MnlI | CCTC | 3 cut(s) | 250, 296, 652 |
| MroXI | GAANNNNTTC | 2 cut(s) | 8, 613 |
| MseI | TTAA | 5 cut(s) | 197, 357, 642, 651, 696 |
| MslI | CAYNNNNRTG | 1 cut(s) | 483 |
| MspA1I | CMGCKG | 1 cut(s) | 473 |
| MspI | CCGG | 4 cut(s) | 278, 366, 393, 508 |
| MspR9I | CCNGG | 2 cut(s) | 151, 278 |
| MvaI | CCWGG | 1 cut(s) | 151 |
| MvnI | CGCG | 1 cut(s) | 64 |
| NciI | CCSGG | 1 cut(s) | 278 |
| NdeII | GATC | 4 cut(s) | 34, 204, 583, 705 |
| NlaIII | CATG | 4 cut(s) | 49, 75, 139, 337 |
| NlaIV | GGNNCC | 1 cut(s) | 635 |
| NspI | RCATGY | 1 cut(s) | 139 |
| NspV | TTCGAA | 1 cut(s) | 617 |
| PciI | ACATGT | 1 cut(s) | 135 |
| PciSI | GCTCTTC | 1 cut(s) | 604 |
| PdmI | GAANNNNTTC | 2 cut(s) | 8, 613 |
| PfeI | GAWTC | 3 cut(s) | 9, 430, 619 |
| PkrI | GCNGC | 2 cut(s) | 339, 472 |
| PleI | GAGTC | 2 cut(s) | 323, 555 |
| PpsI | GAGTC | 2 cut(s) | 323, 555 |
| PscI | ACATGT | 1 cut(s) | 135 |
| PshAI | GACNNNNGTC | 1 cut(s) | 186 |
| Psp1406I | AACGTT | 1 cut(s) | 553 |
| Psp6I | CCWGG | 1 cut(s) | 149 |
| PspGI | CCWGG | 1 cut(s) | 149 |
| PspN4I | GGNNCC | 1 cut(s) | 635 |
| RseI | CAYNNNNRTG | 1 cut(s) | 483 |
| SapI | GCTCTTC | 1 cut(s) | 604 |
| SaqAI | TTAA | 5 cut(s) | 197, 357, 642, 651, 696 |
| SatI | GCNGC | 2 cut(s) | 338, 471 |
| Sau3AI | GATC | 4 cut(s) | 34, 204, 583, 705 |
| SchI | GAGTC | 2 cut(s) | 323, 555 |
| ScrFI | CCNGG | 2 cut(s) | 151, 278 |
| SetI | ASST | 7 cut(s) | 22, 241, 245, 294, 556, 583, 616 |
| SfaNI | GCATC | 2 cut(s) | 238, 300 |
| SfuI | TTCGAA | 1 cut(s) | 617 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 483 |
| Sse9I | AATT | 4 cut(s) | 198, 219, 503, 639 |
| SsiI | CCGC | 1 cut(s) | 471 |
| SspMI | CTAG | 2 cut(s) | 240, 443 |
| StyD4I | CCNGG | 2 cut(s) | 149, 276 |
| StyI | CCWWGG | 2 cut(s) | 224, 239 |
| TaaI | ACNGT | 2 cut(s) | 32, 284 |
| TaiI | ACGT | 1 cut(s) | 556 |
| TaqI | TCGA | 4 cut(s) | 232, 483, 607, 617 |
| TasI | AATT | 4 cut(s) | 198, 219, 503, 639 |
| TauI | GCSGC | 1 cut(s) | 473 |
| TfiI | GAWTC | 3 cut(s) | 9, 430, 619 |
| Tru1I | TTAA | 5 cut(s) | 197, 357, 642, 651, 696 |
| Tru9I | TTAA | 5 cut(s) | 197, 357, 642, 651, 696 |
| TscAI | CASTG | 1 cut(s) | 661 |
| TseI | GCWGC | 1 cut(s) | 337 |
| TspDTI | ATGAA | 4 cut(s) | 17, 437, 470, 501 |
| TspGWI | ACGGA | 1 cut(s) | 132 |
| TspRI | CASTG | 1 cut(s) | 661 |
| XceI | RCATGY | 1 cut(s) | 139 |
| XmaJI | CCTAGG | 1 cut(s) | 239 |
| XmnI | GAANNNNTTC | 2 cut(s) | 8, 613 |
| XspI | CTAG | 2 cut(s) | 240, 443 |