ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 37 |
| Acc16I | TGCGCA | 1 cut(s) | 114 |
| Acc36I | ACCTGC | 3 cut(s) | 37, 521, 552 |
| AccB1I | GGYRCC | 1 cut(s) | 885 |
| AccBSI | CCGCTC | 2 cut(s) | 104, 124 |
| AccII | CGCG | 2 cut(s) | 12, 140 |
| AciI | CCGC | 4 cut(s) | 104, 124, 710, 991 |
| AclWI | GGATC | 4 cut(s) | 115, 143, 187, 510 |
| AcoI | YGGCCR | 1 cut(s) | 429 |
| AcuI | CTGAAG | 1 cut(s) | 321 |
| AfaI | GTAC | 1 cut(s) | 847 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 234, 821 |
| AflIII | ACRYGT | 1 cut(s) | 185 |
| AgsI | TTSAA | 5 cut(s) | 389, 755, 917, 932, 983 |
| AjnI | CCWGG | 1 cut(s) | 145 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 358, 390, 750, 782 |
| AluBI | AGCT | 3 cut(s) | 22, 254, 398 |
| AluI | AGCT | 3 cut(s) | 22, 254, 398 |
| Alw26I | GTCTC | 3 cut(s) | 64, 322, 384 |
| AlwI | GGATC | 4 cut(s) | 115, 143, 187, 510 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 677 |
| AoxI | GGCC | 3 cut(s) | 191, 220, 429 |
| ApeKI | GCWGC | 4 cut(s) | 142, 494, 717, 811 |
| AspLEI | GCGC | 3 cut(s) | 115, 142, 811 |
| AspS9I | GGNCC | 2 cut(s) | 220, 573 |
| AsuC2I | CCSGG | 2 cut(s) | 77, 433 |
| AsuHPI | GGTGA | 2 cut(s) | 61, 208 |
| AsuNHI | GCTAGC | 1 cut(s) | 398 |
| AvaII | GGWCC | 1 cut(s) | 573 |
| BanI | GGYRCC | 1 cut(s) | 885 |
| BauI | CACGAG | 1 cut(s) | 319 |
| BbvI | GCAGC | 4 cut(s) | 154, 481, 729, 823 |
| BccI | CCATC | 2 cut(s) | 285, 421 |
| BciT130I | CCWGG | 1 cut(s) | 147 |
| BclI | TGATCA | 1 cut(s) | 84 |
| BcnI | CCSGG | 2 cut(s) | 77, 433 |
| BcoDI | GTCTC | 3 cut(s) | 64, 322, 384 |
| BfaI | CTAG | 5 cut(s) | 224, 395, 399, 650, 738 |
| BfmI | CTRYAG | 3 cut(s) | 559, 861, 878 |
| BfuAI | ACCTGC | 3 cut(s) | 37, 521, 552 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 151 |
| BisI | GCNGC | 5 cut(s) | 143, 495, 718, 812, 992 |
| BlsI | GCNGC | 5 cut(s) | 144, 496, 719, 813, 993 |
| Bme1390I | CCNGG | 3 cut(s) | 77, 147, 433 |
| Bme18I | GGWCC | 1 cut(s) | 573 |
| BmgT120I | GGNCC | 2 cut(s) | 220, 573 |
| BmiI | GGNNCC | 1 cut(s) | 887 |
| BmrFI | CCNGG | 3 cut(s) | 77, 147, 433 |
| BmrI | ACTGGG | 1 cut(s) | 814 |
| BmsI | GCATC | 3 cut(s) | 359, 517, 722 |
| BmtI | GCTAGC | 1 cut(s) | 402 |
| BmuI | ACTGGG | 1 cut(s) | 814 |
| BoxI | GACNNNNGTC | 1 cut(s) | 678 |
| BpmI | CTGGAG | 2 cut(s) | 88, 168 |
| BpuMI | CCSGG | 2 cut(s) | 77, 433 |
| BsaI | GGTCTC | 1 cut(s) | 384 |
| BsaJI | CCNNGG | 3 cut(s) | 76, 419, 432 |
| BsaWI | WCCGGW | 1 cut(s) | 821 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 300, 330, 619, 649 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 234, 821 |
| Bse118I | RCCGGY | 1 cut(s) | 193 |
| Bse1I | ACTGG | 2 cut(s) | 809, 976 |
| Bse3DI | GCAATG | 4 cut(s) | 87, 504, 659, 785 |
| BseBI | CCWGG | 1 cut(s) | 147 |
| BseDI | CCNNGG | 3 cut(s) | 76, 419, 432 |
| BseGI | GGATG | 3 cut(s) | 266, 532, 792 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 234, 821 |
| BseMI | GCAATG | 4 cut(s) | 87, 504, 659, 785 |
| BseMII | CTCAG | 3 cut(s) | 9, 716, 984 |
| BseNI | ACTGG | 2 cut(s) | 809, 976 |
| BseRI | GAGGAG | 3 cut(s) | 114, 178, 958 |
| BseXI | GCAGC | 4 cut(s) | 154, 481, 729, 823 |
| BseYI | CCCAGC | 1 cut(s) | 154 |
| Bsh1236I | CGCG | 2 cut(s) | 12, 140 |
| BshFI | GGCC | 3 cut(s) | 193, 222, 431 |
| BshNI | GGYRCC | 1 cut(s) | 885 |
| BsiSI | CCGG | 5 cut(s) | 76, 177, 194, 432, 822 |
| BslFI | GGGAC | 2 cut(s) | 93, 449 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 234, 821 |
| BsmAI | GTCTC | 3 cut(s) | 64, 322, 384 |
| BsmFI | GGGAC | 2 cut(s) | 93, 449 |
| BsnI | GGCC | 3 cut(s) | 193, 222, 431 |
| Bso31I | GGTCTC | 1 cut(s) | 384 |
| BspACI | CCGC | 4 cut(s) | 104, 124, 710, 991 |
| BspANI | GGCC | 3 cut(s) | 193, 222, 431 |
| BspCNI | CTCAG | 3 cut(s) | 10, 717, 983 |
| BspFNI | CGCG | 2 cut(s) | 12, 140 |
| BspHI | TCATGA | 1 cut(s) | 951 |
| BspLI | GGNNCC | 1 cut(s) | 887 |
| BspMAI | CTGCAG | 3 cut(s) | 563, 865, 882 |
| BspMI | ACCTGC | 3 cut(s) | 37, 521, 552 |
| BspOI | GCTAGC | 1 cut(s) | 402 |
| BspPI | GGATC | 4 cut(s) | 115, 143, 187, 510 |
| BspQI | GCTCTTC | 1 cut(s) | 114 |
| BspT107I | GGYRCC | 1 cut(s) | 885 |
| BspTNI | GGTCTC | 1 cut(s) | 384 |
| BsrBI | CCGCTC | 2 cut(s) | 104, 124 |
| BsrDI | GCAATG | 4 cut(s) | 87, 504, 659, 785 |
| BsrFI | RCCGGY | 1 cut(s) | 193 |
| BsrI | ACTGG | 2 cut(s) | 809, 976 |
| BssAI | RCCGGY | 1 cut(s) | 193 |
| BssECI | CCNNGG | 3 cut(s) | 76, 419, 432 |
| BssSI | CACGAG | 1 cut(s) | 319 |
| BssT1I | CCWWGG | 1 cut(s) | 419 |
| Bst2BI | CACGAG | 1 cut(s) | 319 |
| Bst2UI | CCWGG | 1 cut(s) | 147 |
| Bst4CI | ACNGT | 3 cut(s) | 410, 624, 942 |
| Bst6I | CTCTTC | 2 cut(s) | 114, 696 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 32 |
| BstC8I | GCNNGC | 5 cut(s) | 24, 126, 208, 400, 865 |
| BstDEI | CTNAG | 4 cut(s) | 18, 644, 725, 970 |
| BstF5I | GGATG | 3 cut(s) | 266, 532, 792 |
| BstFNI | CGCG | 2 cut(s) | 12, 140 |
| BstHHI | GCGC | 3 cut(s) | 115, 142, 811 |
| BstMAI | GTCTC | 3 cut(s) | 64, 322, 384 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 32, 110, 121, 151, 768 |
| BstNI | CCWGG | 1 cut(s) | 147 |
| BstNSI | RCATGY | 1 cut(s) | 189 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 678 |
| BstSCI | CCNGG | 3 cut(s) | 75, 145, 431 |
| BstSFI | CTRYAG | 3 cut(s) | 559, 861, 878 |
| BstUI | CGCG | 2 cut(s) | 12, 140 |
| BstV1I | GCAGC | 4 cut(s) | 154, 481, 729, 823 |
| BstX2I | RGATCY | 2 cut(s) | 107, 502 |
| BstYI | RGATCY | 2 cut(s) | 107, 502 |
| BsuRI | GGCC | 3 cut(s) | 193, 222, 431 |
| BtgZI | GCGATG | 1 cut(s) | 745 |
| BtsCI | GGATG | 3 cut(s) | 266, 532, 792 |
| BtsI | GCAGTG | 1 cut(s) | 887 |
| BtsIMutI | CAGTG | 3 cut(s) | 629, 722, 887 |
| BveI | ACCTGC | 3 cut(s) | 37, 521, 552 |
| Cac8I | GCNNGC | 5 cut(s) | 24, 126, 208, 400, 865 |
| CaiI | CAGNNNCTG | 1 cut(s) | 677 |
| CciI | TCATGA | 1 cut(s) | 951 |
| CfoI | GCGC | 3 cut(s) | 115, 142, 811 |
| Cfr10I | RCCGGY | 1 cut(s) | 193 |
| Cfr13I | GGNCC | 2 cut(s) | 220, 573 |
| CseI | GACGC | 1 cut(s) | 43 |
| Csp6I | GTAC | 1 cut(s) | 846 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 302, 337 |
| CviAII | CATG | 5 cut(s) | 186, 570, 785, 952, 1001 |
| CviQI | GTAC | 1 cut(s) | 846 |
| DdeI | CTNAG | 4 cut(s) | 18, 644, 725, 970 |
| EaeI | YGGCCR | 1 cut(s) | 429 |
| Eam1104I | CTCTTC | 2 cut(s) | 114, 696 |
| EarI | CTCTTC | 2 cut(s) | 114, 696 |
| Eco130I | CCWWGG | 1 cut(s) | 419 |
| Eco31I | GGTCTC | 1 cut(s) | 384 |
| Eco32I | GATATC | 2 cut(s) | 259, 949 |
| Eco47I | GGWCC | 1 cut(s) | 573 |
| Eco57I | CTGAAG | 1 cut(s) | 321 |
| EcoO109I | RGGNCCY | 1 cut(s) | 220 |
| EcoRII | CCWGG | 1 cut(s) | 145 |
| EcoRV | GATATC | 2 cut(s) | 259, 949 |
| EcoT14I | CCWWGG | 1 cut(s) | 419 |
| ErhI | CCWWGG | 1 cut(s) | 419 |
| FaeI | CATG | 5 cut(s) | 189, 573, 788, 955, 1004 |
| FaqI | GGGAC | 2 cut(s) | 93, 449 |
| FatI | CATG | 5 cut(s) | 185, 569, 784, 951, 1000 |
| FauI | CCCGC | 2 cut(s) | 97, 117 |
| FbaI | TGATCA | 1 cut(s) | 84 |
| Fnu4HI | GCNGC | 5 cut(s) | 143, 495, 718, 812, 992 |
| FokI | GGATG | 3 cut(s) | 253, 539, 779 |
| Fsp4HI | GCNGC | 5 cut(s) | 143, 495, 718, 812, 992 |
| FspBI | CTAG | 5 cut(s) | 224, 395, 399, 650, 738 |
| FspI | TGCGCA | 1 cut(s) | 114 |
| GlaI | GCGC | 3 cut(s) | 114, 141, 810 |
| GluI | GCNGC | 5 cut(s) | 143, 495, 718, 812, 992 |
| GsaI | CCCAGC | 1 cut(s) | 158 |
| GsuI | CTGGAG | 2 cut(s) | 88, 168 |
| HaeIII | GGCC | 3 cut(s) | 193, 222, 431 |
| HapII | CCGG | 5 cut(s) | 76, 177, 194, 432, 822 |
| HgaI | GACGC | 1 cut(s) | 43 |
| HhaI | GCGC | 3 cut(s) | 115, 142, 811 |
| Hin1II | CATG | 5 cut(s) | 189, 573, 788, 955, 1004 |
| Hin6I | GCGC | 3 cut(s) | 113, 140, 809 |
| HinP1I | GCGC | 3 cut(s) | 113, 140, 809 |
| HinfI | GANTC | 1 cut(s) | 674 |
| HpaII | CCGG | 5 cut(s) | 76, 177, 194, 432, 822 |
| HphI | GGTGA | 2 cut(s) | 61, 208 |
| Hpy166II | GTNNAC | 2 cut(s) | 567, 585 |
| Hpy188I | TCNGA | 7 cut(s) | 19, 244, 263, 301, 357, 673, 973 |
| Hpy188III | TCNNGA | 4 cut(s) | 483, 511, 932, 952 |
| Hpy8I | GTNNAC | 2 cut(s) | 567, 585 |
| HpyAV | CCTTC | 4 cut(s) | 163, 299, 517, 752 |
| HpyCH4III | ACNGT | 3 cut(s) | 410, 624, 942 |
| HpyCH4V | TGCA | 8 cut(s) | 26, 92, 350, 497, 530, 561, 863, 880 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 32, 110, 121, 151, 768 |
| HpyF3I | CTNAG | 4 cut(s) | 18, 644, 725, 970 |
| Hsp92II | CATG | 5 cut(s) | 189, 573, 788, 955, 1004 |
| HspAI | GCGC | 3 cut(s) | 113, 140, 809 |
| Ksp22I | TGATCA | 1 cut(s) | 84 |
| LguI | GCTCTTC | 1 cut(s) | 114 |
| LmnI | GCTCC | 1 cut(s) | 101 |
| Lsp1109I | GCAGC | 4 cut(s) | 154, 481, 729, 823 |
| LweI | GCATC | 3 cut(s) | 359, 517, 722 |
| MaeI | CTAG | 5 cut(s) | 224, 395, 399, 650, 738 |
| MaeIII | GTNAC | 1 cut(s) | 635 |
| MbiI | CCGCTC | 2 cut(s) | 104, 124 |
| MboII | GAAGA | 5 cut(s) | 131, 314, 683, 767, 995 |
| MfeI | CAATTG | 1 cut(s) | 1016 |
| MflI | RGATCY | 2 cut(s) | 107, 502 |
| MluCI | AATT | 2 cut(s) | 654, 1016 |
| MlyI | GAGTC | 1 cut(s) | 668 |
| MmeI | TCCRAC | 4 cut(s) | 76, 600, 820, 859 |
| MseI | TTAA | 3 cut(s) | 441, 818, 899 |
| MspA1I | CMGCKG | 1 cut(s) | 991 |
| MspI | CCGG | 5 cut(s) | 76, 177, 194, 432, 822 |
| MspR9I | CCNGG | 3 cut(s) | 77, 147, 433 |
| MunI | CAATTG | 1 cut(s) | 1016 |
| MvaI | CCWGG | 1 cut(s) | 147 |
| MvnI | CGCG | 2 cut(s) | 12, 140 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 32, 110, 121, 151, 768 |
| NciI | CCSGG | 2 cut(s) | 77, 433 |
| NheI | GCTAGC | 1 cut(s) | 398 |
| NlaIII | CATG | 5 cut(s) | 189, 573, 788, 955, 1004 |
| NlaIV | GGNNCC | 1 cut(s) | 887 |
| NsbI | TGCGCA | 1 cut(s) | 114 |
| NspI | RCATGY | 1 cut(s) | 189 |
| PagI | TCATGA | 1 cut(s) | 951 |
| PaqCI | CACCTGC | 1 cut(s) | 37 |
| PciI | ACATGT | 1 cut(s) | 185 |
| PciSI | GCTCTTC | 1 cut(s) | 114 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 361 |
| PflFI | GACNNNGTC | 1 cut(s) | 376 |
| PkrI | GCNGC | 5 cut(s) | 144, 496, 719, 813, 993 |
| PleI | GAGTC | 1 cut(s) | 668 |
| PpsI | GAGTC | 1 cut(s) | 668 |
| PscI | ACATGT | 1 cut(s) | 185 |
| PshAI | GACNNNNGTC | 1 cut(s) | 678 |
| Psp6I | CCWGG | 1 cut(s) | 145 |
| PspFI | CCCAGC | 1 cut(s) | 154 |
| PspGI | CCWGG | 1 cut(s) | 145 |
| PspN4I | GGNNCC | 1 cut(s) | 887 |
| PspPI | GGNCC | 2 cut(s) | 220, 573 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 978, 1010 |
| PstI | CTGCAG | 3 cut(s) | 563, 865, 882 |
| PstNI | CAGNNNCTG | 1 cut(s) | 677 |
| PsuI | RGATCY | 2 cut(s) | 107, 502 |
| PsyI | GACNNNGTC | 1 cut(s) | 376 |
| RsaI | GTAC | 1 cut(s) | 847 |
| RsaNI | GTAC | 1 cut(s) | 846 |
| SapI | GCTCTTC | 1 cut(s) | 114 |
| SaqAI | TTAA | 3 cut(s) | 441, 818, 899 |
| SatI | GCNGC | 5 cut(s) | 143, 495, 718, 812, 992 |
| Sau96I | GGNCC | 2 cut(s) | 220, 573 |
| SchI | GAGTC | 1 cut(s) | 668 |
| ScrFI | CCNGG | 3 cut(s) | 77, 147, 433 |
| SetI | ASST | 9 cut(s) | 24, 51, 174, 256, 400, 421, 450, 535, 566 |
| SfaNI | GCATC | 3 cut(s) | 359, 517, 722 |
| SfcI | CTRYAG | 3 cut(s) | 559, 861, 878 |
| SinI | GGWCC | 1 cut(s) | 573 |
| Sse9I | AATT | 2 cut(s) | 654, 1016 |
| SsiI | CCGC | 4 cut(s) | 104, 124, 710, 991 |
| SspMI | CTAG | 5 cut(s) | 224, 395, 399, 650, 738 |
| StyD4I | CCNGG | 3 cut(s) | 75, 145, 431 |
| StyI | CCWWGG | 1 cut(s) | 419 |
| TaaI | ACNGT | 3 cut(s) | 410, 624, 942 |
| TaqI | TCGA | 3 cut(s) | 182, 364, 488 |
| TasI | AATT | 2 cut(s) | 654, 1016 |
| TauI | GCSGC | 1 cut(s) | 994 |
| Tru1I | TTAA | 3 cut(s) | 441, 818, 899 |
| Tru9I | TTAA | 3 cut(s) | 441, 818, 899 |
| TscAI | CASTG | 3 cut(s) | 629, 729, 887 |
| TseI | GCWGC | 4 cut(s) | 142, 494, 717, 811 |
| TspDTI | ATGAA | 4 cut(s) | 319, 536, 968, 989 |
| TspRI | CASTG | 3 cut(s) | 629, 729, 887 |
| Tth111I | GACNNNGTC | 1 cut(s) | 376 |
| VpaK11BI | GGWCC | 1 cut(s) | 573 |
| XceI | RCATGY | 1 cut(s) | 189 |
| XspI | CTAG | 5 cut(s) | 224, 395, 399, 650, 738 |