ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 715 |
| AccB1I | GGYRCC | 1 cut(s) | 581 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 332 |
| AccBSI | CCGCTC | 1 cut(s) | 253 |
| AccI | GTMKAC | 1 cut(s) | 539 |
| AccII | CGCG | 1 cut(s) | 183 |
| AciI | CCGC | 5 cut(s) | 181, 253, 404, 605, 820 |
| AclI | AACGTT | 2 cut(s) | 979, 1024 |
| AclWI | GGATC | 2 cut(s) | 396, 1404 |
| AcsI | RAATTY | 2 cut(s) | 608, 1067 |
| AcuI | CTGAAG | 2 cut(s) | 530, 1226 |
| AcvI | CACGTG | 1 cut(s) | 623 |
| AcyI | GRCGYC | 2 cut(s) | 712, 1096 |
| AfaI | GTAC | 4 cut(s) | 118, 589, 660, 1318 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 289, 332, 597, 670, 794, 856 |
| AflII | CTTAAG | 1 cut(s) | 1043 |
| AflIII | ACRYGT | 1 cut(s) | 622 |
| AgsI | TTSAA | 9 cut(s) | 61, 74, 242, 415, 728, 985, 1089, 1331, 1344 |
| AjiI | CACGTC | 1 cut(s) | 247 |
| AjnI | CCWGG | 4 cut(s) | 90, 382, 849, 1351 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 554, 586 |
| AloI | GAACNNNNNNTCC | 4 cut(s) | 792, 824, 1009, 1041 |
| AluBI | AGCT | 5 cut(s) | 908, 913, 964, 1085, 1271 |
| AluI | AGCT | 5 cut(s) | 908, 913, 964, 1085, 1271 |
| Alw21I | GWGCWC | 2 cut(s) | 745, 910 |
| Alw26I | GTCTC | 2 cut(s) | 206, 1001 |
| AlwI | GGATC | 2 cut(s) | 396, 1404 |
| AoxI | GGCC | 1 cut(s) | 1355 |
| ApeKI | GCWGC | 1 cut(s) | 917 |
| ApoI | RAATTY | 2 cut(s) | 608, 1067 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1196 |
| AspLEI | GCGC | 3 cut(s) | 147, 783, 1351 |
| AspS9I | GGNCC | 2 cut(s) | 652, 1355 |
| AsuC2I | CCSGG | 1 cut(s) | 376 |
| AsuHPI | GGTGA | 3 cut(s) | 913, 1064, 1362 |
| AvaII | GGWCC | 1 cut(s) | 652 |
| BaeGI | GKGCMC | 1 cut(s) | 584 |
| BanI | GGYRCC | 1 cut(s) | 581 |
| BanII | GRGCYC | 1 cut(s) | 910 |
| BauI | CACGAG | 1 cut(s) | 1257 |
| BbrPI | CACGTG | 1 cut(s) | 623 |
| Bbv12I | GWGCWC | 2 cut(s) | 745, 910 |
| BbvI | GCAGC | 1 cut(s) | 904 |
| BccI | CCATC | 4 cut(s) | 233, 645, 1007, 1160 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 464, 498 |
| BciT130I | CCWGG | 4 cut(s) | 92, 384, 851, 1353 |
| BcnI | CCSGG | 1 cut(s) | 376 |
| BcoDI | GTCTC | 2 cut(s) | 206, 1001 |
| BfaI | CTAG | 3 cut(s) | 48, 371, 1029 |
| BfmI | CTRYAG | 1 cut(s) | 965 |
| BfoI | RGCGCY | 2 cut(s) | 148, 1352 |
| BfrI | CTTAAG | 1 cut(s) | 1043 |
| BisI | GCNGC | 2 cut(s) | 820, 918 |
| BlpI | GCTNAGC | 1 cut(s) | 909 |
| BlsI | GCNGC | 2 cut(s) | 821, 919 |
| Bme1390I | CCNGG | 5 cut(s) | 92, 376, 384, 851, 1353 |
| Bme18I | GGWCC | 1 cut(s) | 652 |
| BmgBI | CACGTC | 1 cut(s) | 247 |
| BmgT120I | GGNCC | 2 cut(s) | 652, 1355 |
| BmiI | GGNNCC | 3 cut(s) | 583, 801, 1293 |
| BmrFI | CCNGG | 5 cut(s) | 92, 376, 384, 851, 1353 |
| BmrI | ACTGGG | 1 cut(s) | 1402 |
| BmsI | GCATC | 5 cut(s) | 88, 93, 256, 462, 478 |
| BmuI | ACTGGG | 1 cut(s) | 1402 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 740, 772 |
| BpmI | CTGGAG | 1 cut(s) | 549 |
| Bpu10I | CCTNAGC | 1 cut(s) | 101 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 909 |
| BpuEI | CTTGAG | 2 cut(s) | 944, 1212 |
| BpuMI | CCSGG | 1 cut(s) | 376 |
| Bsa29I | ATCGAT | 1 cut(s) | 1002 |
| BsaAI | YACGTR | 3 cut(s) | 543, 623, 658 |
| BsaBI | GATNNNNATC | 1 cut(s) | 998 |
| BsaHI | GRCGYC | 2 cut(s) | 712, 1096 |
| BsaI | GGTCTC | 1 cut(s) | 206 |
| BsaJI | CCNNGG | 3 cut(s) | 383, 762, 1352 |
| BsaWI | WCCGGW | 1 cut(s) | 720 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 438, 468, 792, 822, 1009, 1039 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 289, 332, 597, 670, 794, 856 |
| Bse118I | RCCGGY | 1 cut(s) | 1157 |
| Bse1I | ACTGG | 3 cut(s) | 337, 602, 1397 |
| Bse8I | GATNNNNATC | 1 cut(s) | 998 |
| BseBI | CCWGG | 4 cut(s) | 92, 384, 851, 1353 |
| BseCI | ATCGAT | 1 cut(s) | 1002 |
| BseDI | CCNNGG | 3 cut(s) | 383, 762, 1352 |
| BseGI | GGATG | 4 cut(s) | 223, 322, 493, 637 |
| BseJI | GATNNNNATC | 1 cut(s) | 998 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 289, 332, 597, 670, 794, 856 |
| BseMII | CTCAG | 1 cut(s) | 923 |
| BseNI | ACTGG | 3 cut(s) | 337, 602, 1397 |
| BseRI | GAGGAG | 2 cut(s) | 785, 902 |
| BseSI | GKGCMC | 1 cut(s) | 584 |
| BseXI | GCAGC | 1 cut(s) | 904 |
| Bsh1236I | CGCG | 1 cut(s) | 183 |
| BshFI | GGCC | 1 cut(s) | 1357 |
| BshNI | GGYRCC | 1 cut(s) | 581 |
| BshVI | ATCGAT | 1 cut(s) | 1002 |
| BsiHKAI | GWGCWC | 2 cut(s) | 745, 910 |
| BsiSI | CCGG | 3 cut(s) | 376, 721, 1158 |
| BslFI | GGGAC | 2 cut(s) | 853, 872 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 289, 332, 597, 670, 794, 856 |
| BsmAI | GTCTC | 2 cut(s) | 206, 1001 |
| BsmFI | GGGAC | 2 cut(s) | 853, 872 |
| BsnI | GGCC | 1 cut(s) | 1357 |
| Bso31I | GGTCTC | 1 cut(s) | 206 |
| Bsp1286I | GDGCHC | 3 cut(s) | 584, 745, 910 |
| Bsp143I | GATC | 7 cut(s) | 12, 365, 388, 1054, 1110, 1363, 1396 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 909 |
| BspACI | CCGC | 5 cut(s) | 181, 253, 404, 605, 820 |
| BspANI | GGCC | 1 cut(s) | 1357 |
| BspCNI | CTCAG | 1 cut(s) | 922 |
| BspDI | ATCGAT | 1 cut(s) | 1002 |
| BspFNI | CGCG | 1 cut(s) | 183 |
| BspHI | TCATGA | 1 cut(s) | 745 |
| BspLI | GGNNCC | 3 cut(s) | 583, 801, 1293 |
| BspPI | GGATC | 2 cut(s) | 396, 1404 |
| BspT107I | GGYRCC | 1 cut(s) | 581 |
| BspTI | CTTAAG | 1 cut(s) | 1043 |
| BspTNI | GGTCTC | 1 cut(s) | 206 |
| BsrBI | CCGCTC | 1 cut(s) | 253 |
| BsrFI | RCCGGY | 1 cut(s) | 1157 |
| BsrI | ACTGG | 3 cut(s) | 337, 602, 1397 |
| BssAI | RCCGGY | 1 cut(s) | 1157 |
| BssECI | CCNNGG | 3 cut(s) | 383, 762, 1352 |
| BssMI | GATC | 7 cut(s) | 12, 365, 388, 1054, 1110, 1363, 1396 |
| BssNAI | GTATAC | 1 cut(s) | 540 |
| BssNI | GRCGYC | 2 cut(s) | 712, 1096 |
| BssSI | CACGAG | 1 cut(s) | 1257 |
| BssT1I | CCWWGG | 1 cut(s) | 762 |
| Bst1107I | GTATAC | 1 cut(s) | 540 |
| Bst2BI | CACGAG | 1 cut(s) | 1257 |
| Bst2UI | CCWGG | 4 cut(s) | 92, 384, 851, 1353 |
| Bst4CI | ACNGT | 5 cut(s) | 23, 116, 816, 969, 1052 |
| Bst6I | CTCTTC | 1 cut(s) | 723 |
| BstACI | GRCGYC | 2 cut(s) | 712, 1096 |
| BstAFI | CTTAAG | 1 cut(s) | 1043 |
| BstBAI | YACGTR | 3 cut(s) | 543, 623, 658 |
| BstC8I | GCNNGC | 2 cut(s) | 406, 915 |
| BstDEI | CTNAG | 5 cut(s) | 101, 120, 140, 909, 1234 |
| BstF5I | GGATG | 4 cut(s) | 223, 322, 493, 637 |
| BstFNI | CGCG | 1 cut(s) | 183 |
| BstH2I | RGCGCY | 2 cut(s) | 148, 1352 |
| BstHHI | GCGC | 3 cut(s) | 147, 783, 1351 |
| BstKTI | GATC | 7 cut(s) | 15, 368, 391, 1057, 1113, 1366, 1399 |
| BstMAI | GTCTC | 2 cut(s) | 206, 1001 |
| BstMBI | GATC | 7 cut(s) | 12, 365, 388, 1054, 1110, 1363, 1396 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 914 |
| BstNI | CCWGG | 4 cut(s) | 92, 384, 851, 1353 |
| BstNSI | RCATGY | 1 cut(s) | 56 |
| BstSCI | CCNGG | 5 cut(s) | 90, 374, 382, 849, 1351 |
| BstSFI | CTRYAG | 1 cut(s) | 965 |
| BstSLI | GKGCMC | 1 cut(s) | 584 |
| BstUI | CGCG | 1 cut(s) | 183 |
| BstV1I | GCAGC | 1 cut(s) | 904 |
| BstX2I | RGATCY | 2 cut(s) | 388, 1396 |
| BstYI | RGATCY | 2 cut(s) | 388, 1396 |
| BstZ17I | GTATAC | 1 cut(s) | 540 |
| Bsu15I | ATCGAT | 1 cut(s) | 1002 |
| BsuRI | GGCC | 1 cut(s) | 1357 |
| BsuTUI | ATCGAT | 1 cut(s) | 1002 |
| BtgZI | GCGATG | 1 cut(s) | 65 |
| BtrI | CACGTC | 1 cut(s) | 247 |
| BtsCI | GGATG | 4 cut(s) | 223, 322, 493, 637 |
| BtsIMutI | CAGTG | 2 cut(s) | 112, 974 |
| Cac8I | GCNNGC | 2 cut(s) | 406, 915 |
| CciI | TCATGA | 1 cut(s) | 745 |
| CfoI | GCGC | 3 cut(s) | 147, 783, 1351 |
| Cfr10I | RCCGGY | 1 cut(s) | 1157 |
| Cfr13I | GGNCC | 2 cut(s) | 652, 1355 |
| ClaI | ATCGAT | 1 cut(s) | 1002 |
| CseI | GACGC | 1 cut(s) | 1085 |
| CsiI | ACCWGGT | 1 cut(s) | 90 |
| Csp6I | GTAC | 4 cut(s) | 117, 588, 659, 1317 |
| CviAII | CATG | 3 cut(s) | 53, 698, 746 |
| CviQI | GTAC | 4 cut(s) | 117, 588, 659, 1317 |
| DdeI | CTNAG | 5 cut(s) | 101, 120, 140, 909, 1234 |
| DpnI | GATC | 7 cut(s) | 14, 367, 390, 1056, 1112, 1365, 1398 |
| DpnII | GATC | 7 cut(s) | 12, 365, 388, 1054, 1110, 1363, 1396 |
| Eam1104I | CTCTTC | 1 cut(s) | 723 |
| EarI | CTCTTC | 1 cut(s) | 723 |
| Ecl136II | GAGCTC | 1 cut(s) | 908 |
| Eco130I | CCWWGG | 1 cut(s) | 762 |
| Eco24I | GRGCYC | 1 cut(s) | 910 |
| Eco31I | GGTCTC | 1 cut(s) | 206 |
| Eco47I | GGWCC | 1 cut(s) | 652 |
| Eco53kI | GAGCTC | 1 cut(s) | 908 |
| Eco57I | CTGAAG | 2 cut(s) | 530, 1226 |
| Eco72I | CACGTG | 1 cut(s) | 623 |
| EcoICRI | GAGCTC | 1 cut(s) | 908 |
| EcoRI | GAATTC | 1 cut(s) | 608 |
| EcoRII | CCWGG | 4 cut(s) | 90, 382, 849, 1351 |
| EcoT14I | CCWWGG | 1 cut(s) | 762 |
| EcoT38I | GRGCYC | 1 cut(s) | 910 |
| ErhI | CCWWGG | 1 cut(s) | 762 |
| FaeI | CATG | 3 cut(s) | 56, 701, 749 |
| FaqI | GGGAC | 2 cut(s) | 853, 872 |
| FatI | CATG | 3 cut(s) | 52, 697, 745 |
| FauI | CCCGC | 1 cut(s) | 397 |
| FblI | GTMKAC | 1 cut(s) | 539 |
| Fnu4HI | GCNGC | 2 cut(s) | 820, 918 |
| FokI | GGATG | 4 cut(s) | 230, 309, 500, 624 |
| FriOI | GRGCYC | 1 cut(s) | 910 |
| Fsp4HI | GCNGC | 2 cut(s) | 820, 918 |
| FspBI | CTAG | 3 cut(s) | 48, 371, 1029 |
| GlaI | GCGC | 3 cut(s) | 146, 782, 1350 |
| GluI | GCNGC | 2 cut(s) | 820, 918 |
| GsuI | CTGGAG | 1 cut(s) | 549 |
| HaeII | RGCGCY | 2 cut(s) | 148, 1352 |
| HaeIII | GGCC | 1 cut(s) | 1357 |
| HapII | CCGG | 3 cut(s) | 376, 721, 1158 |
| HgaI | GACGC | 1 cut(s) | 1085 |
| HhaI | GCGC | 3 cut(s) | 147, 783, 1351 |
| Hin1I | GRCGYC | 2 cut(s) | 712, 1096 |
| Hin1II | CATG | 3 cut(s) | 56, 701, 749 |
| Hin6I | GCGC | 3 cut(s) | 145, 781, 1349 |
| HinP1I | GCGC | 3 cut(s) | 145, 781, 1349 |
| HindIII | AAGCTT | 1 cut(s) | 1083 |
| HinfI | GANTC | 6 cut(s) | 221, 379, 551, 841, 1148, 1407 |
| HpaII | CCGG | 3 cut(s) | 376, 721, 1158 |
| HphI | GGTGA | 3 cut(s) | 913, 1064, 1362 |
| Hpy166II | GTNNAC | 1 cut(s) | 540 |
| Hpy188III | TCNNGA | 8 cut(s) | 16, 242, 444, 485, 746, 1029, 1229, 1384 |
| Hpy8I | GTNNAC | 1 cut(s) | 540 |
| Hpy99I | CGWCG | 1 cut(s) | 714 |
| HpyAV | CCTTC | 7 cut(s) | 505, 556, 876, 890, 1221, 1300, 1350 |
| HpyCH4III | ACNGT | 5 cut(s) | 23, 116, 816, 969, 1052 |
| HpyCH4IV | ACGT | 7 cut(s) | 246, 542, 622, 657, 712, 979, 1024 |
| HpyCH4V | TGCA | 4 cut(s) | 475, 694, 928, 1336 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 914 |
| HpyF3I | CTNAG | 5 cut(s) | 101, 120, 140, 909, 1234 |
| HpySE526I | ACGT | 7 cut(s) | 246, 542, 622, 657, 712, 979, 1024 |
| Hsp92I | GRCGYC | 2 cut(s) | 712, 1096 |
| Hsp92II | CATG | 3 cut(s) | 56, 701, 749 |
| HspAI | GCGC | 3 cut(s) | 145, 781, 1349 |
| Kzo9I | GATC | 7 cut(s) | 12, 365, 388, 1054, 1110, 1363, 1396 |
| LmnI | GCTCC | 4 cut(s) | 124, 250, 813, 1297 |
| Lsp1109I | GCAGC | 1 cut(s) | 904 |
| LweI | GCATC | 5 cut(s) | 88, 93, 256, 462, 478 |
| MabI | ACCWGGT | 1 cut(s) | 90 |
| MaeI | CTAG | 3 cut(s) | 48, 371, 1029 |
| MaeII | ACGT | 7 cut(s) | 246, 542, 622, 657, 712, 979, 1024 |
| MaeIII | GTNAC | 2 cut(s) | 360, 503 |
| MalI | GATC | 7 cut(s) | 14, 367, 390, 1056, 1112, 1365, 1398 |
| MbiI | CCGCTC | 1 cut(s) | 253 |
| MboI | GATC | 7 cut(s) | 12, 365, 388, 1054, 1110, 1363, 1396 |
| MboII | GAAGA | 4 cut(s) | 73, 740, 1232, 1372 |
| MflI | RGATCY | 2 cut(s) | 388, 1396 |
| MhlI | GDGCHC | 3 cut(s) | 584, 745, 910 |
| MluCI | AATT | 5 cut(s) | 69, 608, 716, 1035, 1067 |
| MlyI | GAGTC | 4 cut(s) | 215, 835, 1157, 1401 |
| MmeI | TCCRAC | 5 cut(s) | 552, 630, 733, 835, 1384 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1196 |
| MseI | TTAA | 3 cut(s) | 68, 630, 1044 |
| MspA1I | CMGCKG | 1 cut(s) | 913 |
| MspCI | CTTAAG | 1 cut(s) | 1043 |
| MspI | CCGG | 3 cut(s) | 376, 721, 1158 |
| MspR9I | CCNGG | 5 cut(s) | 92, 376, 384, 851, 1353 |
| MvaI | CCWGG | 4 cut(s) | 92, 384, 851, 1353 |
| MvnI | CGCG | 1 cut(s) | 183 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 914 |
| NciI | CCSGG | 1 cut(s) | 376 |
| NdeII | GATC | 7 cut(s) | 12, 365, 388, 1054, 1110, 1363, 1396 |
| NlaIII | CATG | 3 cut(s) | 56, 701, 749 |
| NlaIV | GGNNCC | 3 cut(s) | 583, 801, 1293 |
| NspI | RCATGY | 1 cut(s) | 56 |
| PagI | TCATGA | 1 cut(s) | 745 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1196 |
| PfeI | GAWTC | 2 cut(s) | 379, 551 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 332 |
| PfoI | TCCNGGA | 1 cut(s) | 849 |
| PkrI | GCNGC | 2 cut(s) | 821, 919 |
| PleI | GAGTC | 4 cut(s) | 215, 835, 1156, 1401 |
| PmaCI | CACGTG | 1 cut(s) | 623 |
| PmlI | CACGTG | 1 cut(s) | 623 |
| PpsI | GAGTC | 4 cut(s) | 215, 835, 1156, 1401 |
| Ppu21I | YACGTR | 3 cut(s) | 543, 623, 658 |
| Psp124BI | GAGCTC | 1 cut(s) | 910 |
| Psp1406I | AACGTT | 2 cut(s) | 979, 1024 |
| Psp6I | CCWGG | 4 cut(s) | 90, 382, 849, 1351 |
| PspCI | CACGTG | 1 cut(s) | 623 |
| PspGI | CCWGG | 4 cut(s) | 90, 382, 849, 1351 |
| PspN4I | GGNNCC | 3 cut(s) | 583, 801, 1293 |
| PspPI | GGNCC | 2 cut(s) | 652, 1355 |
| PsuI | RGATCY | 2 cut(s) | 388, 1396 |
| PvuII | CAGCTG | 1 cut(s) | 913 |
| RsaI | GTAC | 4 cut(s) | 118, 589, 660, 1318 |
| RsaNI | GTAC | 4 cut(s) | 117, 588, 659, 1317 |
| SacI | GAGCTC | 1 cut(s) | 910 |
| SaqAI | TTAA | 3 cut(s) | 68, 630, 1044 |
| SatI | GCNGC | 2 cut(s) | 820, 918 |
| Sau3AI | GATC | 7 cut(s) | 12, 365, 388, 1054, 1110, 1363, 1396 |
| Sau96I | GGNCC | 2 cut(s) | 652, 1355 |
| SchI | GAGTC | 4 cut(s) | 215, 835, 1157, 1401 |
| ScrFI | CCNGG | 5 cut(s) | 92, 376, 384, 851, 1353 |
| SduI | GDGCHC | 3 cut(s) | 584, 745, 910 |
| SexAI | ACCWGGT | 1 cut(s) | 90 |
| SfaNI | GCATC | 5 cut(s) | 88, 93, 256, 462, 478 |
| SfcI | CTRYAG | 1 cut(s) | 965 |
| SinI | GGWCC | 1 cut(s) | 652 |
| SmlI | CTYRAG | 3 cut(s) | 959, 1043, 1227 |
| SmoI | CTYRAG | 3 cut(s) | 959, 1043, 1227 |
| Sse9I | AATT | 5 cut(s) | 69, 608, 716, 1035, 1067 |
| SsiI | CCGC | 5 cut(s) | 181, 253, 404, 605, 820 |
| SspI | AATATT | 2 cut(s) | 7, 423 |
| SspMI | CTAG | 3 cut(s) | 48, 371, 1029 |
| SstI | GAGCTC | 1 cut(s) | 910 |
| StyD4I | CCNGG | 5 cut(s) | 90, 374, 382, 849, 1351 |
| StyI | CCWWGG | 1 cut(s) | 762 |
| TaaI | ACNGT | 5 cut(s) | 23, 116, 816, 969, 1052 |
| TaiI | ACGT | 7 cut(s) | 249, 545, 625, 660, 715, 982, 1027 |
| TaqI | TCGA | 2 cut(s) | 1002, 1125 |
| TasI | AATT | 5 cut(s) | 69, 608, 716, 1035, 1067 |
| TatI | WGTACW | 1 cut(s) | 116 |
| TauI | GCSGC | 1 cut(s) | 822 |
| TfiI | GAWTC | 2 cut(s) | 379, 551 |
| Tru1I | TTAA | 3 cut(s) | 68, 630, 1044 |
| Tru9I | TTAA | 3 cut(s) | 68, 630, 1044 |
| TscAI | CASTG | 2 cut(s) | 119, 974 |
| TseI | GCWGC | 1 cut(s) | 917 |
| TspDTI | ATGAA | 4 cut(s) | 17, 432, 1002, 1289 |
| TspRI | CASTG | 2 cut(s) | 119, 974 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 332 |
| Vha464I | CTTAAG | 1 cut(s) | 1043 |
| VpaK11BI | GGWCC | 1 cut(s) | 652 |
| XapI | RAATTY | 2 cut(s) | 608, 1067 |
| XbaI | TCTAGA | 1 cut(s) | 1028 |
| XceI | RCATGY | 1 cut(s) | 56 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 390 |
| XmiI | GTMKAC | 1 cut(s) | 539 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1196 |
| XspI | CTAG | 3 cut(s) | 48, 371, 1029 |
| ZraI | GACGTC | 1 cut(s) | 713 |