ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Exo_endo_phos | PF03372 | 8 - 196 | 5.5e-06 | Endonuclease/Exonuclease/phosphatase family |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 404 |
| AatII | GACGTC | 1 cut(s) | 279 |
| Acc36I | ACCTGC | 1 cut(s) | 404 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 222 |
| AccIII | TCCGGA | 1 cut(s) | 705 |
| AclWI | GGATC | 1 cut(s) | 360 |
| AcoI | YGGCCR | 1 cut(s) | 213 |
| AcsI | RAATTY | 1 cut(s) | 488 |
| AcyI | GRCGYC | 1 cut(s) | 276 |
| AfaI | GTAC | 2 cut(s) | 243, 603 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 222, 306, 803 |
| AflIII | ACRYGT | 1 cut(s) | 244 |
| AgsI | TTSAA | 4 cut(s) | 424, 520, 596, 737 |
| AjnI | CCWGG | 3 cut(s) | 210, 340, 630 |
| AjuI | GAANNNNNNNTTGG | 3 cut(s) | 32, 732, 764 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 687, 719 |
| AluBI | AGCT | 5 cut(s) | 177, 335, 367, 383, 856 |
| AluI | AGCT | 5 cut(s) | 177, 335, 367, 383, 856 |
| Alw21I | GWGCWC | 1 cut(s) | 472 |
| Alw26I | GTCTC | 1 cut(s) | 190 |
| AlwI | GGATC | 1 cut(s) | 360 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 211 |
| Ama87I | CYCGRG | 2 cut(s) | 191, 465 |
| Aor13HI | TCCGGA | 1 cut(s) | 705 |
| AoxI | GGCC | 5 cut(s) | 208, 213, 375, 458, 722 |
| ApeKI | GCWGC | 4 cut(s) | 335, 364, 383, 627 |
| ApoI | RAATTY | 1 cut(s) | 488 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 256 |
| AspS9I | GGNCC | 4 cut(s) | 208, 376, 458, 723 |
| AsuHPI | GGTGA | 1 cut(s) | 428 |
| AsuII | TTCGAA | 1 cut(s) | 493 |
| AvaI | CYCGRG | 2 cut(s) | 191, 465 |
| BalI | TGGCCA | 1 cut(s) | 215 |
| BanII | GRGCYC | 1 cut(s) | 67 |
| Bbv12I | GWGCWC | 1 cut(s) | 472 |
| BbvI | GCAGC | 4 cut(s) | 322, 370, 376, 639 |
| BccI | CCATC | 3 cut(s) | 403, 427, 658 |
| BceAI | ACGGC | 1 cut(s) | 170 |
| BciT130I | CCWGG | 3 cut(s) | 212, 342, 632 |
| BclI | TGATCA | 1 cut(s) | 661 |
| BcoDI | GTCTC | 1 cut(s) | 190 |
| BfaI | CTAG | 4 cut(s) | 68, 122, 318, 380 |
| BfmI | CTRYAG | 1 cut(s) | 31 |
| BfuAI | ACCTGC | 1 cut(s) | 404 |
| BglII | AGATCT | 1 cut(s) | 303 |
| BisI | GCNGC | 4 cut(s) | 336, 365, 384, 628 |
| BlsI | GCNGC | 4 cut(s) | 337, 366, 385, 629 |
| Bme1390I | CCNGG | 3 cut(s) | 212, 342, 632 |
| BmeT110I | CYCGRG | 2 cut(s) | 191, 465 |
| BmgT120I | GGNCC | 4 cut(s) | 208, 376, 458, 723 |
| BmiI | GGNNCC | 1 cut(s) | 696 |
| BmrFI | CCNGG | 3 cut(s) | 212, 342, 632 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 603, 635 |
| BpmI | CTGGAG | 1 cut(s) | 363 |
| Bpu14I | TTCGAA | 1 cut(s) | 493 |
| BsaHI | GRCGYC | 1 cut(s) | 276 |
| BsaJI | CCNNGG | 4 cut(s) | 7, 192, 340, 401 |
| BsaWI | WCCGGW | 1 cut(s) | 705 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 222, 306, 803 |
| Bse1I | ACTGG | 2 cut(s) | 477, 511 |
| Bse3DI | GCAATG | 1 cut(s) | 798 |
| BseAI | TCCGGA | 1 cut(s) | 705 |
| BseBI | CCWGG | 3 cut(s) | 212, 342, 632 |
| BseDI | CCNNGG | 4 cut(s) | 7, 192, 340, 401 |
| BseGI | GGATG | 1 cut(s) | 515 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 222, 306, 803 |
| BseMI | GCAATG | 1 cut(s) | 798 |
| BseNI | ACTGG | 2 cut(s) | 477, 511 |
| BseRI | GAGGAG | 1 cut(s) | 453 |
| BseXI | GCAGC | 4 cut(s) | 322, 370, 376, 639 |
| BshFI | GGCC | 5 cut(s) | 210, 215, 377, 460, 724 |
| BsiHKAI | GWGCWC | 1 cut(s) | 472 |
| BsiHKCI | CYCGRG | 2 cut(s) | 191, 465 |
| BsiSI | CCGG | 1 cut(s) | 706 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 222, 306, 803 |
| BsmAI | GTCTC | 1 cut(s) | 190 |
| BsmI | GAATGC | 1 cut(s) | 52 |
| BsnI | GGCC | 5 cut(s) | 210, 215, 377, 460, 724 |
| BsoBI | CYCGRG | 2 cut(s) | 191, 465 |
| Bsp119I | TTCGAA | 1 cut(s) | 493 |
| Bsp1286I | GDGCHC | 2 cut(s) | 67, 472 |
| Bsp13I | TCCGGA | 1 cut(s) | 705 |
| Bsp1407I | TGTACA | 1 cut(s) | 241 |
| Bsp143I | GATC | 4 cut(s) | 132, 303, 352, 661 |
| Bsp19I | CCATGG | 1 cut(s) | 401 |
| BspANI | GGCC | 5 cut(s) | 210, 215, 377, 460, 724 |
| BspEI | TCCGGA | 1 cut(s) | 705 |
| BspLI | GGNNCC | 1 cut(s) | 696 |
| BspMAI | CTGCAG | 1 cut(s) | 35 |
| BspMI | ACCTGC | 1 cut(s) | 404 |
| BspPI | GGATC | 1 cut(s) | 360 |
| BspT104I | TTCGAA | 1 cut(s) | 493 |
| BsrDI | GCAATG | 1 cut(s) | 798 |
| BsrGI | TGTACA | 1 cut(s) | 241 |
| BsrI | ACTGG | 2 cut(s) | 477, 511 |
| BssECI | CCNNGG | 4 cut(s) | 7, 192, 340, 401 |
| BssMI | GATC | 4 cut(s) | 132, 303, 352, 661 |
| BssNI | GRCGYC | 1 cut(s) | 276 |
| BssT1I | CCWWGG | 2 cut(s) | 7, 401 |
| Bst2UI | CCWGG | 3 cut(s) | 212, 342, 632 |
| Bst4CI | ACNGT | 2 cut(s) | 43, 601 |
| BstACI | GRCGYC | 1 cut(s) | 276 |
| BstAUI | TGTACA | 1 cut(s) | 241 |
| BstBI | TTCGAA | 1 cut(s) | 493 |
| BstC8I | GCNNGC | 1 cut(s) | 84 |
| BstDEI | CTNAG | 1 cut(s) | 857 |
| BstDSI | CCRYGG | 1 cut(s) | 401 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 801 |
| BstF5I | GGATG | 1 cut(s) | 515 |
| BstKTI | GATC | 4 cut(s) | 135, 306, 355, 664 |
| BstMAI | GTCTC | 1 cut(s) | 190 |
| BstMBI | GATC | 4 cut(s) | 132, 303, 352, 661 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 327, 383 |
| BstNI | CCWGG | 3 cut(s) | 212, 342, 632 |
| BstNSI | RCATGY | 1 cut(s) | 248 |
| BstSCI | CCNGG | 3 cut(s) | 210, 340, 630 |
| BstSFI | CTRYAG | 1 cut(s) | 31 |
| BstV1I | GCAGC | 4 cut(s) | 322, 370, 376, 639 |
| BstX2I | RGATCY | 1 cut(s) | 303 |
| BstYI | RGATCY | 1 cut(s) | 303 |
| BsuRI | GGCC | 5 cut(s) | 210, 215, 377, 460, 724 |
| BtgI | CCRYGG | 1 cut(s) | 401 |
| BtsCI | GGATG | 1 cut(s) | 515 |
| BtsIMutI | CAGTG | 2 cut(s) | 48, 470 |
| BveI | ACCTGC | 1 cut(s) | 404 |
| Cac8I | GCNNGC | 1 cut(s) | 84 |
| CaiI | CAGNNNCTG | 1 cut(s) | 211 |
| Cfr13I | GGNCC | 4 cut(s) | 208, 376, 458, 723 |
| CseI | GACGC | 1 cut(s) | 566 |
| Csp6I | GTAC | 2 cut(s) | 242, 602 |
| CviAII | CATG | 8 cut(s) | 79, 239, 245, 360, 402, 481, 502, 552 |
| CviQI | GTAC | 2 cut(s) | 242, 602 |
| DdeI | CTNAG | 1 cut(s) | 857 |
| DpnI | GATC | 4 cut(s) | 134, 305, 354, 663 |
| DpnII | GATC | 4 cut(s) | 132, 303, 352, 661 |
| DraI | TTTAAA | 1 cut(s) | 718 |
| EaeI | YGGCCR | 1 cut(s) | 213 |
| Eco130I | CCWWGG | 2 cut(s) | 7, 401 |
| Eco24I | GRGCYC | 1 cut(s) | 67 |
| Eco32I | GATATC | 1 cut(s) | 76 |
| Eco88I | CYCGRG | 2 cut(s) | 191, 465 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 801 |
| EcoO109I | RGGNCCY | 4 cut(s) | 208, 376, 458, 723 |
| EcoRII | CCWGG | 3 cut(s) | 210, 340, 630 |
| EcoRV | GATATC | 1 cut(s) | 76 |
| EcoT14I | CCWWGG | 2 cut(s) | 7, 401 |
| EcoT38I | GRGCYC | 1 cut(s) | 67 |
| ErhI | CCWWGG | 2 cut(s) | 7, 401 |
| FaeI | CATG | 8 cut(s) | 82, 242, 248, 363, 405, 484, 505, 555 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 161, 193 |
| FatI | CATG | 8 cut(s) | 78, 238, 244, 359, 401, 480, 501, 551 |
| FbaI | TGATCA | 1 cut(s) | 661 |
| Fnu4HI | GCNGC | 4 cut(s) | 336, 365, 384, 628 |
| FokI | GGATG | 1 cut(s) | 522 |
| FriOI | GRGCYC | 1 cut(s) | 67 |
| Fsp4HI | GCNGC | 4 cut(s) | 336, 365, 384, 628 |
| FspBI | CTAG | 4 cut(s) | 68, 122, 318, 380 |
| GluI | GCNGC | 4 cut(s) | 336, 365, 384, 628 |
| GsuI | CTGGAG | 1 cut(s) | 363 |
| HaeIII | GGCC | 5 cut(s) | 210, 215, 377, 460, 724 |
| HapII | CCGG | 1 cut(s) | 706 |
| HgaI | GACGC | 1 cut(s) | 566 |
| Hin1I | GRCGYC | 1 cut(s) | 276 |
| Hin1II | CATG | 8 cut(s) | 82, 242, 248, 363, 405, 484, 505, 555 |
| HinfI | GANTC | 4 cut(s) | 143, 200, 646, 656 |
| HpaII | CCGG | 1 cut(s) | 706 |
| HphI | GGTGA | 1 cut(s) | 428 |
| Hpy188I | TCNGA | 3 cut(s) | 115, 655, 661 |
| Hpy188III | TCNNGA | 4 cut(s) | 191, 453, 581, 706 |
| Hpy99I | CGWCG | 1 cut(s) | 281 |
| HpyCH4III | ACNGT | 2 cut(s) | 43, 601 |
| HpyCH4IV | ACGT | 1 cut(s) | 276 |
| HpyCH4V | TGCA | 1 cut(s) | 33 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 327, 383 |
| HpyF3I | CTNAG | 1 cut(s) | 857 |
| HpySE526I | ACGT | 1 cut(s) | 276 |
| Hsp92I | GRCGYC | 1 cut(s) | 276 |
| Hsp92II | CATG | 8 cut(s) | 82, 242, 248, 363, 405, 484, 505, 555 |
| Kpn2I | TCCGGA | 1 cut(s) | 705 |
| Ksp22I | TGATCA | 1 cut(s) | 661 |
| Kzo9I | GATC | 4 cut(s) | 132, 303, 352, 661 |
| LmnI | GCTCC | 2 cut(s) | 9, 574 |
| Lsp1109I | GCAGC | 4 cut(s) | 322, 370, 376, 639 |
| MaeI | CTAG | 4 cut(s) | 68, 122, 318, 380 |
| MaeII | ACGT | 1 cut(s) | 276 |
| MaeIII | GTNAC | 2 cut(s) | 391, 416 |
| MalI | GATC | 4 cut(s) | 134, 305, 354, 663 |
| MboI | GATC | 4 cut(s) | 132, 303, 352, 661 |
| MboII | GAAGA | 4 cut(s) | 100, 209, 507, 749 |
| MflI | RGATCY | 1 cut(s) | 303 |
| MhlI | GDGCHC | 2 cut(s) | 67, 472 |
| MlsI | TGGCCA | 1 cut(s) | 215 |
| MluCI | AATT | 2 cut(s) | 488, 822 |
| MluNI | TGGCCA | 1 cut(s) | 215 |
| MlyI | GAGTC | 2 cut(s) | 137, 665 |
| Mox20I | TGGCCA | 1 cut(s) | 215 |
| MroI | TCCGGA | 1 cut(s) | 705 |
| MroXI | GAANNNNTTC | 1 cut(s) | 256 |
| MscI | TGGCCA | 1 cut(s) | 215 |
| MseI | TTAA | 2 cut(s) | 168, 717 |
| MslI | CAYNNNNRTG | 1 cut(s) | 243 |
| Msp20I | TGGCCA | 1 cut(s) | 215 |
| MspA1I | CMGCKG | 1 cut(s) | 367 |
| MspI | CCGG | 1 cut(s) | 706 |
| MspR9I | CCNGG | 3 cut(s) | 212, 342, 632 |
| Mva1269I | GAATGC | 1 cut(s) | 52 |
| MvaI | CCWGG | 3 cut(s) | 212, 342, 632 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 327, 383 |
| NcoI | CCATGG | 1 cut(s) | 401 |
| NdeII | GATC | 4 cut(s) | 132, 303, 352, 661 |
| NlaIII | CATG | 8 cut(s) | 82, 242, 248, 363, 405, 484, 505, 555 |
| NlaIV | GGNNCC | 1 cut(s) | 696 |
| NmuCI | GTSAC | 2 cut(s) | 391, 416 |
| NspI | RCATGY | 1 cut(s) | 248 |
| NspV | TTCGAA | 1 cut(s) | 493 |
| PaeR7I | CTCGAG | 1 cut(s) | 465 |
| PaqCI | CACCTGC | 1 cut(s) | 404 |
| PciI | ACATGT | 1 cut(s) | 244 |
| PctI | GAATGC | 1 cut(s) | 52 |
| PdmI | GAANNNNTTC | 1 cut(s) | 256 |
| PfeI | GAWTC | 2 cut(s) | 200, 646 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 222 |
| PkrI | GCNGC | 4 cut(s) | 337, 366, 385, 629 |
| PleI | GAGTC | 2 cut(s) | 137, 664 |
| PpsI | GAGTC | 2 cut(s) | 137, 664 |
| PscI | ACATGT | 1 cut(s) | 244 |
| Psp6I | CCWGG | 3 cut(s) | 210, 340, 630 |
| PspGI | CCWGG | 3 cut(s) | 210, 340, 630 |
| PspN4I | GGNNCC | 1 cut(s) | 696 |
| PspPI | GGNCC | 4 cut(s) | 208, 376, 458, 723 |
| PspXI | VCTCGAGB | 1 cut(s) | 465 |
| PstI | CTGCAG | 1 cut(s) | 35 |
| PstNI | CAGNNNCTG | 1 cut(s) | 211 |
| PsuI | RGATCY | 1 cut(s) | 303 |
| PvuII | CAGCTG | 1 cut(s) | 367 |
| RsaI | GTAC | 2 cut(s) | 243, 603 |
| RsaNI | GTAC | 2 cut(s) | 242, 602 |
| RseI | CAYNNNNRTG | 1 cut(s) | 243 |
| SaqAI | TTAA | 2 cut(s) | 168, 717 |
| SatI | GCNGC | 4 cut(s) | 336, 365, 384, 628 |
| Sau3AI | GATC | 4 cut(s) | 132, 303, 352, 661 |
| Sau96I | GGNCC | 4 cut(s) | 208, 376, 458, 723 |
| SchI | GAGTC | 2 cut(s) | 137, 665 |
| ScrFI | CCNGG | 3 cut(s) | 212, 342, 632 |
| SduI | GDGCHC | 2 cut(s) | 67, 472 |
| SfcI | CTRYAG | 1 cut(s) | 31 |
| Sfr274I | CTCGAG | 1 cut(s) | 465 |
| SfuI | TTCGAA | 1 cut(s) | 493 |
| SlaI | CTCGAG | 1 cut(s) | 465 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 243 |
| SmlI | CTYRAG | 1 cut(s) | 465 |
| SmoI | CTYRAG | 1 cut(s) | 465 |
| Sse9I | AATT | 2 cut(s) | 488, 822 |
| SspMI | CTAG | 4 cut(s) | 68, 122, 318, 380 |
| StyD4I | CCNGG | 3 cut(s) | 210, 340, 630 |
| StyI | CCWWGG | 2 cut(s) | 7, 401 |
| TaaI | ACNGT | 2 cut(s) | 43, 601 |
| TaiI | ACGT | 1 cut(s) | 279 |
| TaqI | TCGA | 4 cut(s) | 279, 355, 466, 493 |
| TasI | AATT | 2 cut(s) | 488, 822 |
| TatI | WGTACW | 1 cut(s) | 241 |
| TfiI | GAWTC | 2 cut(s) | 200, 646 |
| Tru1I | TTAA | 2 cut(s) | 168, 717 |
| Tru9I | TTAA | 2 cut(s) | 168, 717 |
| TscAI | CASTG | 2 cut(s) | 48, 477 |
| TseFI | GTSAC | 2 cut(s) | 391, 416 |
| TseI | GCWGC | 4 cut(s) | 335, 364, 383, 627 |
| Tsp45I | GTSAC | 2 cut(s) | 391, 416 |
| TspRI | CASTG | 2 cut(s) | 48, 477 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 222 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 801 |
| XapI | RAATTY | 1 cut(s) | 488 |
| XceI | RCATGY | 1 cut(s) | 248 |
| XhoI | CTCGAG | 1 cut(s) | 465 |
| XmnI | GAANNNNTTC | 1 cut(s) | 256 |
| XspI | CTAG | 4 cut(s) | 68, 122, 318, 380 |
| ZraI | GACGTC | 1 cut(s) | 277 |