ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 775 |
| AccII | CGCG | 1 cut(s) | 192 |
| AccIII | TCCGGA | 1 cut(s) | 249 |
| AciI | CCGC | 2 cut(s) | 244, 604 |
| AclWI | GGATC | 1 cut(s) | 561 |
| AcsI | RAATTY | 1 cut(s) | 367 |
| AfeI | AGCGCT | 1 cut(s) | 8 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 442 |
| AgsI | TTSAA | 8 cut(s) | 53, 116, 623, 629, 671, 806, 875, 886 |
| AjnI | CCWGG | 2 cut(s) | 404, 504 |
| AluBI | AGCT | 2 cut(s) | 386, 568 |
| AluI | AGCT | 2 cut(s) | 386, 568 |
| Alw26I | GTCTC | 4 cut(s) | 44, 76, 414, 583 |
| AlwI | GGATC | 1 cut(s) | 561 |
| Aor13HI | TCCGGA | 1 cut(s) | 249 |
| Aor51HI | AGCGCT | 1 cut(s) | 8 |
| AoxI | GGCC | 3 cut(s) | 214, 460, 718 |
| ApeKI | GCWGC | 2 cut(s) | 4, 386 |
| ApoI | RAATTY | 1 cut(s) | 367 |
| AspLEI | GCGC | 2 cut(s) | 9, 159 |
| AspS9I | GGNCC | 1 cut(s) | 461 |
| AsuC2I | CCSGG | 1 cut(s) | 464 |
| AsuHPI | GGTGA | 1 cut(s) | 177 |
| BaeGI | GKGCMC | 1 cut(s) | 871 |
| BbsI | GAAGAC | 1 cut(s) | 97 |
| BbvCI | CCTCAGC | 1 cut(s) | 564 |
| BbvI | GCAGC | 2 cut(s) | 16, 373 |
| BccI | CCATC | 4 cut(s) | 164, 405, 517, 908 |
| BciT130I | CCWGG | 2 cut(s) | 406, 506 |
| BcnI | CCSGG | 1 cut(s) | 464 |
| BcoDI | GTCTC | 4 cut(s) | 44, 76, 414, 583 |
| BfaI | CTAG | 4 cut(s) | 68, 96, 122, 383 |
| BfmI | CTRYAG | 1 cut(s) | 342 |
| BfoI | RGCGCY | 1 cut(s) | 10 |
| BfuAI | ACCTGC | 1 cut(s) | 775 |
| BisI | GCNGC | 3 cut(s) | 5, 245, 387 |
| BlsI | GCNGC | 3 cut(s) | 6, 246, 388 |
| Bme1390I | CCNGG | 3 cut(s) | 406, 464, 506 |
| BmgT120I | GGNCC | 1 cut(s) | 461 |
| BmiI | GGNNCC | 2 cut(s) | 248, 544 |
| BmrFI | CCNGG | 3 cut(s) | 406, 464, 506 |
| BmsI | GCATC | 2 cut(s) | 52, 265 |
| BpiI | GAAGAC | 1 cut(s) | 97 |
| BpmI | CTGGAG | 1 cut(s) | 438 |
| Bpu10I | CCTNAGC | 1 cut(s) | 564 |
| BpuEI | CTTGAG | 1 cut(s) | 593 |
| BpuMI | CCSGG | 1 cut(s) | 464 |
| BsaI | GGTCTC | 2 cut(s) | 44, 583 |
| BsaJI | CCNNGG | 2 cut(s) | 404, 504 |
| BsaWI | WCCGGW | 1 cut(s) | 249 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 442 |
| Bse1I | ACTGG | 4 cut(s) | 660, 696, 742, 819 |
| BseAI | TCCGGA | 1 cut(s) | 249 |
| BseBI | CCWGG | 2 cut(s) | 406, 506 |
| BseDI | CCNNGG | 2 cut(s) | 404, 504 |
| BseGI | GGATG | 3 cut(s) | 67, 687, 823 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 442 |
| BseMII | CTCAG | 2 cut(s) | 71, 578 |
| BseNI | ACTGG | 4 cut(s) | 660, 696, 742, 819 |
| BseSI | GKGCMC | 1 cut(s) | 871 |
| BseXI | GCAGC | 2 cut(s) | 16, 373 |
| BsgI | GTGCAG | 1 cut(s) | 584 |
| Bsh1236I | CGCG | 1 cut(s) | 192 |
| Bsh1285I | CGRYCG | 1 cut(s) | 551 |
| BshFI | GGCC | 3 cut(s) | 216, 462, 720 |
| BsiEI | CGRYCG | 1 cut(s) | 551 |
| BsiSI | CCGG | 2 cut(s) | 250, 464 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 442 |
| BsmAI | GTCTC | 4 cut(s) | 44, 76, 414, 583 |
| BsnI | GGCC | 3 cut(s) | 216, 462, 720 |
| Bso31I | GGTCTC | 2 cut(s) | 44, 583 |
| Bsp1286I | GDGCHC | 1 cut(s) | 871 |
| Bsp13I | TCCGGA | 1 cut(s) | 249 |
| Bsp143I | GATC | 2 cut(s) | 548, 553 |
| Bsp68I | TCGCGA | 1 cut(s) | 192 |
| BspACI | CCGC | 2 cut(s) | 244, 604 |
| BspANI | GGCC | 3 cut(s) | 216, 462, 720 |
| BspCNI | CTCAG | 2 cut(s) | 70, 577 |
| BspEI | TCCGGA | 1 cut(s) | 249 |
| BspFNI | CGCG | 1 cut(s) | 192 |
| BspLI | GGNNCC | 2 cut(s) | 248, 544 |
| BspMI | ACCTGC | 1 cut(s) | 775 |
| BspPI | GGATC | 1 cut(s) | 561 |
| BspTNI | GGTCTC | 2 cut(s) | 44, 583 |
| BsrI | ACTGG | 4 cut(s) | 660, 696, 742, 819 |
| BssECI | CCNNGG | 2 cut(s) | 404, 504 |
| BssMI | GATC | 2 cut(s) | 548, 553 |
| Bst2UI | CCWGG | 2 cut(s) | 406, 506 |
| Bst4CI | ACNGT | 4 cut(s) | 32, 343, 560, 647 |
| BstC8I | GCNNGC | 2 cut(s) | 25, 155 |
| BstDEI | CTNAG | 3 cut(s) | 57, 564, 752 |
| BstF5I | GGATG | 3 cut(s) | 67, 687, 823 |
| BstFNI | CGCG | 1 cut(s) | 192 |
| BstH2I | RGCGCY | 1 cut(s) | 10 |
| BstHHI | GCGC | 2 cut(s) | 9, 159 |
| BstKTI | GATC | 2 cut(s) | 551, 556 |
| BstMAI | GTCTC | 4 cut(s) | 44, 76, 414, 583 |
| BstMBI | GATC | 2 cut(s) | 548, 553 |
| BstMCI | CGRYCG | 1 cut(s) | 551 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 189, 344 |
| BstNI | CCWGG | 2 cut(s) | 406, 506 |
| BstNSI | RCATGY | 2 cut(s) | 27, 764 |
| BstSCI | CCNGG | 3 cut(s) | 404, 462, 504 |
| BstSFI | CTRYAG | 1 cut(s) | 342 |
| BstSLI | GKGCMC | 1 cut(s) | 871 |
| BstUI | CGCG | 1 cut(s) | 192 |
| BstV1I | GCAGC | 2 cut(s) | 16, 373 |
| BstV2I | GAAGAC | 1 cut(s) | 97 |
| BsuRI | GGCC | 3 cut(s) | 216, 462, 720 |
| BtsCI | GGATG | 3 cut(s) | 67, 687, 823 |
| BtsIMutI | CAGTG | 4 cut(s) | 339, 556, 667, 703 |
| BtuMI | TCGCGA | 1 cut(s) | 192 |
| BveI | ACCTGC | 1 cut(s) | 775 |
| Cac8I | GCNNGC | 2 cut(s) | 25, 155 |
| CfoI | GCGC | 2 cut(s) | 9, 159 |
| Cfr13I | GGNCC | 1 cut(s) | 461 |
| CseI | GACGC | 1 cut(s) | 624 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 16, 51 |
| CviAII | CATG | 2 cut(s) | 24, 761 |
| DdeI | CTNAG | 3 cut(s) | 57, 564, 752 |
| DpnI | GATC | 2 cut(s) | 550, 555 |
| DpnII | GATC | 2 cut(s) | 548, 553 |
| DraI | TTTAAA | 1 cut(s) | 13 |
| Eco31I | GGTCTC | 2 cut(s) | 44, 583 |
| Eco47III | AGCGCT | 1 cut(s) | 8 |
| EcoRII | CCWGG | 2 cut(s) | 404, 504 |
| FaeI | CATG | 2 cut(s) | 27, 764 |
| FatI | CATG | 2 cut(s) | 23, 760 |
| Fnu4HI | GCNGC | 3 cut(s) | 5, 245, 387 |
| FokI | GGATG | 3 cut(s) | 74, 694, 830 |
| Fsp4HI | GCNGC | 3 cut(s) | 5, 245, 387 |
| FspBI | CTAG | 4 cut(s) | 68, 96, 122, 383 |
| GlaI | GCGC | 2 cut(s) | 8, 158 |
| GluI | GCNGC | 3 cut(s) | 5, 245, 387 |
| GsuI | CTGGAG | 1 cut(s) | 438 |
| HaeII | RGCGCY | 1 cut(s) | 10 |
| HaeIII | GGCC | 3 cut(s) | 216, 462, 720 |
| HapII | CCGG | 2 cut(s) | 250, 464 |
| HgaI | GACGC | 1 cut(s) | 624 |
| HhaI | GCGC | 2 cut(s) | 9, 159 |
| Hin1II | CATG | 2 cut(s) | 27, 764 |
| Hin6I | GCGC | 2 cut(s) | 7, 157 |
| HinP1I | GCGC | 2 cut(s) | 7, 157 |
| HinfI | GANTC | 1 cut(s) | 701 |
| HpaII | CCGG | 2 cut(s) | 250, 464 |
| HphI | GGTGA | 1 cut(s) | 177 |
| Hpy166II | GTNNAC | 1 cut(s) | 812 |
| Hpy188I | TCNGA | 3 cut(s) | 301, 354, 553 |
| Hpy188III | TCNNGA | 7 cut(s) | 59, 191, 250, 546, 572, 584, 790 |
| Hpy8I | GTNNAC | 1 cut(s) | 812 |
| Hpy99I | CGWCG | 1 cut(s) | 618 |
| HpyCH4III | ACNGT | 4 cut(s) | 32, 343, 560, 647 |
| HpyCH4V | TGCA | 6 cut(s) | 4, 23, 27, 278, 601, 657 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 189, 344 |
| HpyF3I | CTNAG | 3 cut(s) | 57, 564, 752 |
| Hsp92II | CATG | 2 cut(s) | 27, 764 |
| HspAI | GCGC | 2 cut(s) | 7, 157 |
| Kpn2I | TCCGGA | 1 cut(s) | 249 |
| Kzo9I | GATC | 2 cut(s) | 548, 553 |
| LmnI | GCTCC | 1 cut(s) | 252 |
| Lsp1109I | GCAGC | 2 cut(s) | 16, 373 |
| LweI | GCATC | 2 cut(s) | 52, 265 |
| MaeI | CTAG | 4 cut(s) | 68, 96, 122, 383 |
| MaeIII | GTNAC | 2 cut(s) | 358, 475 |
| MalI | GATC | 2 cut(s) | 550, 555 |
| MboI | GATC | 2 cut(s) | 548, 553 |
| MboII | GAAGA | 5 cut(s) | 97, 206, 641, 841, 844 |
| MfeI | CAATTG | 1 cut(s) | 652 |
| MhlI | GDGCHC | 1 cut(s) | 871 |
| MluCI | AATT | 8 cut(s) | 367, 452, 623, 652, 742, 835, 875, 904 |
| MmeI | TCCRAC | 1 cut(s) | 659 |
| MnlI | CCTC | 6 cut(s) | 139, 198, 568, 573, 621, 835 |
| MroI | TCCGGA | 1 cut(s) | 249 |
| MseI | TTAA | 4 cut(s) | 12, 426, 579, 824 |
| MslI | CAYNNNNRTG | 2 cut(s) | 273, 855 |
| MspI | CCGG | 2 cut(s) | 250, 464 |
| MspR9I | CCNGG | 3 cut(s) | 406, 464, 506 |
| MunI | CAATTG | 1 cut(s) | 652 |
| MvaI | CCWGG | 2 cut(s) | 406, 506 |
| MvnI | CGCG | 1 cut(s) | 192 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 189, 344 |
| NciI | CCSGG | 1 cut(s) | 464 |
| NdeII | GATC | 2 cut(s) | 548, 553 |
| NlaIII | CATG | 2 cut(s) | 27, 764 |
| NlaIV | GGNNCC | 2 cut(s) | 248, 544 |
| NruI | TCGCGA | 1 cut(s) | 192 |
| NspI | RCATGY | 2 cut(s) | 27, 764 |
| PaeI | GCATGC | 1 cut(s) | 27 |
| PfeI | GAWTC | 1 cut(s) | 701 |
| PkrI | GCNGC | 3 cut(s) | 6, 246, 388 |
| Ple19I | CGATCG | 1 cut(s) | 551 |
| Psp6I | CCWGG | 2 cut(s) | 404, 504 |
| PspGI | CCWGG | 2 cut(s) | 404, 504 |
| PspN4I | GGNNCC | 2 cut(s) | 248, 544 |
| PspPI | GGNCC | 1 cut(s) | 461 |
| PvuI | CGATCG | 1 cut(s) | 551 |
| RruI | TCGCGA | 1 cut(s) | 192 |
| RseI | CAYNNNNRTG | 2 cut(s) | 273, 855 |
| SaqAI | TTAA | 4 cut(s) | 12, 426, 579, 824 |
| SatI | GCNGC | 3 cut(s) | 5, 245, 387 |
| Sau3AI | GATC | 2 cut(s) | 548, 553 |
| Sau96I | GGNCC | 1 cut(s) | 461 |
| ScrFI | CCNGG | 3 cut(s) | 406, 464, 506 |
| SduI | GDGCHC | 1 cut(s) | 871 |
| SfaNI | GCATC | 2 cut(s) | 52, 265 |
| SfcI | CTRYAG | 1 cut(s) | 342 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 273, 855 |
| SmlI | CTYRAG | 1 cut(s) | 572 |
| SmoI | CTYRAG | 1 cut(s) | 572 |
| SphI | GCATGC | 1 cut(s) | 27 |
| Sse9I | AATT | 8 cut(s) | 367, 452, 623, 652, 742, 835, 875, 904 |
| SsiI | CCGC | 2 cut(s) | 244, 604 |
| SspI | AATATT | 2 cut(s) | 49, 76 |
| SspMI | CTAG | 4 cut(s) | 68, 96, 122, 383 |
| StyD4I | CCNGG | 3 cut(s) | 404, 462, 504 |
| TaaI | ACNGT | 4 cut(s) | 32, 343, 560, 647 |
| TaqI | TCGA | 3 cut(s) | 496, 613, 789 |
| TasI | AATT | 8 cut(s) | 367, 452, 623, 652, 742, 835, 875, 904 |
| TauI | GCSGC | 1 cut(s) | 247 |
| TfiI | GAWTC | 1 cut(s) | 701 |
| Tru1I | TTAA | 4 cut(s) | 12, 426, 579, 824 |
| Tru9I | TTAA | 4 cut(s) | 12, 426, 579, 824 |
| TscAI | CASTG | 4 cut(s) | 346, 563, 667, 703 |
| TseI | GCWGC | 2 cut(s) | 4, 386 |
| TspDTI | ATGAA | 5 cut(s) | 444, 500, 809, 842, 903 |
| TspRI | CASTG | 4 cut(s) | 346, 563, 667, 703 |
| XapI | RAATTY | 1 cut(s) | 367 |
| XceI | RCATGY | 2 cut(s) | 27, 764 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 703 |
| XspI | CTAG | 4 cut(s) | 68, 96, 122, 383 |