ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccIII | TCCGGA | 1 cut(s) | 234 |
| AciI | CCGC | 4 cut(s) | 58, 143, 263, 576 |
| AclWI | GGATC | 1 cut(s) | 188 |
| AcsI | RAATTY | 1 cut(s) | 342 |
| AcuI | CTGAAG | 1 cut(s) | 504 |
| AfaI | GTAC | 1 cut(s) | 500 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 87, 385 |
| AgsI | TTSAA | 1 cut(s) | 33 |
| AluBI | AGCT | 3 cut(s) | 86, 452, 592 |
| AluI | AGCT | 3 cut(s) | 86, 452, 592 |
| Alw26I | GTCTC | 2 cut(s) | 46, 166 |
| AlwI | GGATC | 1 cut(s) | 188 |
| Aor13HI | TCCGGA | 1 cut(s) | 234 |
| AoxI | GGCC | 3 cut(s) | 130, 400, 514 |
| ApaI | GGGCCC | 1 cut(s) | 404 |
| ApoI | RAATTY | 1 cut(s) | 342 |
| AspS9I | GGNCC | 5 cut(s) | 130, 260, 400, 401, 515 |
| AsuC2I | CCSGG | 2 cut(s) | 349, 404 |
| AsuHPI | GGTGA | 1 cut(s) | 203 |
| AvaII | GGWCC | 1 cut(s) | 260 |
| BaeGI | GKGCMC | 3 cut(s) | 340, 404, 582 |
| BanII | GRGCYC | 1 cut(s) | 404 |
| BauI | CACGAG | 1 cut(s) | 220 |
| BccI | CCATC | 1 cut(s) | 556 |
| BcnI | CCSGG | 2 cut(s) | 349, 404 |
| BcoDI | GTCTC | 2 cut(s) | 46, 166 |
| BfmI | CTRYAG | 1 cut(s) | 380 |
| Bme1390I | CCNGG | 2 cut(s) | 349, 404 |
| Bme18I | GGWCC | 1 cut(s) | 260 |
| BmgT120I | GGNCC | 5 cut(s) | 130, 260, 400, 401, 515 |
| BmiI | GGNNCC | 1 cut(s) | 402 |
| BmrFI | CCNGG | 2 cut(s) | 349, 404 |
| BmsI | GCATC | 2 cut(s) | 130, 349 |
| Bpu10I | CCTNAGC | 1 cut(s) | 82 |
| BpuMI | CCSGG | 2 cut(s) | 349, 404 |
| BsaWI | WCCGGW | 1 cut(s) | 234 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 87, 385 |
| Bse1I | ACTGG | 1 cut(s) | 180 |
| BseAI | TCCGGA | 1 cut(s) | 234 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 87, 385 |
| BseMII | CTCAG | 2 cut(s) | 140, 383 |
| BseNI | ACTGG | 1 cut(s) | 180 |
| BseRI | GAGGAG | 1 cut(s) | 572 |
| BseSI | GKGCMC | 3 cut(s) | 340, 404, 582 |
| BshFI | GGCC | 3 cut(s) | 132, 402, 516 |
| BsiSI | CCGG | 3 cut(s) | 235, 349, 404 |
| BslFI | GGGAC | 2 cut(s) | 87, 293 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 87, 385 |
| BsmAI | GTCTC | 2 cut(s) | 46, 166 |
| BsmFI | GGGAC | 2 cut(s) | 87, 293 |
| BsmI | GAATGC | 1 cut(s) | 121 |
| BsnI | GGCC | 3 cut(s) | 132, 402, 516 |
| Bsp120I | GGGCCC | 1 cut(s) | 400 |
| Bsp1286I | GDGCHC | 3 cut(s) | 340, 404, 582 |
| Bsp13I | TCCGGA | 1 cut(s) | 234 |
| Bsp143I | GATC | 2 cut(s) | 193, 523 |
| BspACI | CCGC | 4 cut(s) | 58, 143, 263, 576 |
| BspANI | GGCC | 3 cut(s) | 132, 402, 516 |
| BspCNI | CTCAG | 2 cut(s) | 139, 382 |
| BspEI | TCCGGA | 1 cut(s) | 234 |
| BspLI | GGNNCC | 1 cut(s) | 402 |
| BspPI | GGATC | 1 cut(s) | 188 |
| BsrI | ACTGG | 1 cut(s) | 180 |
| BssMI | GATC | 2 cut(s) | 193, 523 |
| BssSI | CACGAG | 1 cut(s) | 220 |
| Bst2BI | CACGAG | 1 cut(s) | 220 |
| BstC8I | GCNNGC | 1 cut(s) | 578 |
| BstDEI | CTNAG | 3 cut(s) | 82, 126, 369 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 383 |
| BstKTI | GATC | 2 cut(s) | 196, 526 |
| BstMAI | GTCTC | 2 cut(s) | 46, 166 |
| BstMBI | GATC | 2 cut(s) | 193, 523 |
| BstNSI | RCATGY | 1 cut(s) | 497 |
| BstSCI | CCNGG | 2 cut(s) | 347, 402 |
| BstSFI | CTRYAG | 1 cut(s) | 380 |
| BstSLI | GKGCMC | 3 cut(s) | 340, 404, 582 |
| BsuRI | GGCC | 3 cut(s) | 132, 402, 516 |
| BtsIMutI | CAGTG | 2 cut(s) | 258, 377 |
| Cac8I | GCNNGC | 1 cut(s) | 578 |
| Cfr13I | GGNCC | 5 cut(s) | 130, 260, 400, 401, 515 |
| Csp6I | GTAC | 1 cut(s) | 499 |
| CviAII | CATG | 2 cut(s) | 494, 503 |
| CviJI | RGCY | 7 cut(s) | 86, 132, 402, 426, 452, 516, 592 |
| CviKI_1 | RGCY | 7 cut(s) | 86, 132, 402, 426, 452, 516, 592 |
| CviQI | GTAC | 1 cut(s) | 499 |
| DdeI | CTNAG | 3 cut(s) | 82, 126, 369 |
| DpnI | GATC | 2 cut(s) | 195, 525 |
| DpnII | GATC | 2 cut(s) | 193, 523 |
| Eco24I | GRGCYC | 1 cut(s) | 404 |
| Eco47I | GGWCC | 1 cut(s) | 260 |
| Eco57I | CTGAAG | 1 cut(s) | 504 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 383 |
| EcoO109I | RGGNCCY | 1 cut(s) | 400 |
| EcoT38I | GRGCYC | 1 cut(s) | 404 |
| FaeI | CATG | 2 cut(s) | 497, 506 |
| FaiI | YATR | 9 cut(s) | 13, 66, 135, 137, 189, 315, 495, 504, 513 |
| FaqI | GGGAC | 2 cut(s) | 87, 293 |
| FatI | CATG | 2 cut(s) | 493, 502 |
| FauI | CCCGC | 1 cut(s) | 569 |
| FriOI | GRGCYC | 1 cut(s) | 404 |
| HaeIII | GGCC | 3 cut(s) | 132, 402, 516 |
| HapII | CCGG | 3 cut(s) | 235, 349, 404 |
| Hin1II | CATG | 2 cut(s) | 497, 506 |
| HindIII | AAGCTT | 1 cut(s) | 590 |
| HpaII | CCGG | 3 cut(s) | 235, 349, 404 |
| HphI | GGTGA | 1 cut(s) | 203 |
| Hpy166II | GTNNAC | 2 cut(s) | 411, 499 |
| Hpy188I | TCNGA | 2 cut(s) | 9, 523 |
| Hpy188III | TCNNGA | 1 cut(s) | 235 |
| Hpy8I | GTNNAC | 2 cut(s) | 411, 499 |
| HpyAV | CCTTC | 2 cut(s) | 85, 528 |
| HpyCH4IV | ACGT | 2 cut(s) | 211, 439 |
| HpyCH4V | TGCA | 1 cut(s) | 493 |
| HpyF3I | CTNAG | 3 cut(s) | 82, 126, 369 |
| HpySE526I | ACGT | 2 cut(s) | 211, 439 |
| Hsp92II | CATG | 2 cut(s) | 497, 506 |
| Kpn2I | TCCGGA | 1 cut(s) | 234 |
| Kzo9I | GATC | 2 cut(s) | 193, 523 |
| LpnPI | CCDG | 9 cut(s) | 113, 161, 248, 251, 318, 362, 368, 417, 472 |
| LweI | GCATC | 2 cut(s) | 130, 349 |
| MaeII | ACGT | 2 cut(s) | 211, 439 |
| MaeIII | GTNAC | 3 cut(s) | 212, 228, 374 |
| MalI | GATC | 2 cut(s) | 195, 525 |
| MboI | GATC | 2 cut(s) | 193, 523 |
| MboII | GAAGA | 1 cut(s) | 521 |
| MhlI | GDGCHC | 3 cut(s) | 340, 404, 582 |
| MluCI | AATT | 6 cut(s) | 16, 206, 240, 247, 342, 534 |
| MnlI | CCTC | 4 cut(s) | 314, 379, 391, 550 |
| MroI | TCCGGA | 1 cut(s) | 234 |
| MseI | TTAA | 3 cut(s) | 285, 296, 483 |
| MslI | CAYNNNNRTG | 2 cut(s) | 108, 138 |
| MspA1I | CMGCKG | 2 cut(s) | 58, 265 |
| MspI | CCGG | 3 cut(s) | 235, 349, 404 |
| MspR9I | CCNGG | 2 cut(s) | 349, 404 |
| Mva1269I | GAATGC | 1 cut(s) | 121 |
| NciI | CCSGG | 2 cut(s) | 349, 404 |
| NdeII | GATC | 2 cut(s) | 193, 523 |
| NlaIII | CATG | 2 cut(s) | 497, 506 |
| NlaIV | GGNNCC | 1 cut(s) | 402 |
| NmuCI | GTSAC | 1 cut(s) | 212 |
| NspI | RCATGY | 1 cut(s) | 497 |
| PctI | GAATGC | 1 cut(s) | 121 |
| PspN4I | GGNNCC | 1 cut(s) | 402 |
| PspOMI | GGGCCC | 1 cut(s) | 400 |
| PspPI | GGNCC | 5 cut(s) | 130, 260, 400, 401, 515 |
| RsaI | GTAC | 1 cut(s) | 500 |
| RsaNI | GTAC | 1 cut(s) | 499 |
| RseI | CAYNNNNRTG | 2 cut(s) | 108, 138 |
| SaqAI | TTAA | 3 cut(s) | 285, 296, 483 |
| Sau3AI | GATC | 2 cut(s) | 193, 523 |
| Sau96I | GGNCC | 5 cut(s) | 130, 260, 400, 401, 515 |
| ScrFI | CCNGG | 2 cut(s) | 349, 404 |
| SduI | GDGCHC | 3 cut(s) | 340, 404, 582 |
| SetI | ASST | 9 cut(s) | 88, 214, 332, 381, 390, 442, 454, 491, 594 |
| SfaNI | GCATC | 2 cut(s) | 130, 349 |
| SfcI | CTRYAG | 1 cut(s) | 380 |
| SinI | GGWCC | 1 cut(s) | 260 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 108, 138 |
| Sse9I | AATT | 6 cut(s) | 16, 206, 240, 247, 342, 534 |
| SsiI | CCGC | 4 cut(s) | 58, 143, 263, 576 |
| SspI | AATATT | 1 cut(s) | 294 |
| StyD4I | CCNGG | 2 cut(s) | 347, 402 |
| TaiI | ACGT | 2 cut(s) | 214, 442 |
| TaqI | TCGA | 1 cut(s) | 396 |
| TasI | AATT | 6 cut(s) | 16, 206, 240, 247, 342, 534 |
| Tru1I | TTAA | 3 cut(s) | 285, 296, 483 |
| Tru9I | TTAA | 3 cut(s) | 285, 296, 483 |
| TscAI | CASTG | 2 cut(s) | 258, 377 |
| TseFI | GTSAC | 1 cut(s) | 212 |
| Tsp45I | GTSAC | 1 cut(s) | 212 |
| TspDTI | ATGAA | 2 cut(s) | 303, 529 |
| TspGWI | ACGGA | 1 cut(s) | 601 |
| TspRI | CASTG | 2 cut(s) | 258, 377 |
| VpaK11BI | GGWCC | 1 cut(s) | 260 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 383 |
| XapI | RAATTY | 1 cut(s) | 342 |
| XceI | RCATGY | 1 cut(s) | 497 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 509 |