ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Exo_endo_phos | PF03372 | 8 - 223 | 6.4e-12 | Endonuclease/Exonuclease/phosphatase family |
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 2 cut(s) | 152, 614 |
| AccB1I | GGYRCC | 1 cut(s) | 854 |
| AccBSI | CCGCTC | 1 cut(s) | 580 |
| AccI | GTMKAC | 1 cut(s) | 72 |
| AciI | CCGC | 4 cut(s) | 5, 376, 580, 589 |
| AclWI | GGATC | 1 cut(s) | 672 |
| AcsI | RAATTY | 1 cut(s) | 432 |
| AcuI | CTGAAG | 1 cut(s) | 478 |
| AfaI | GTAC | 1 cut(s) | 445 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 375 |
| AflIII | ACRYGT | 2 cut(s) | 244, 268 |
| AgsI | TTSAA | 2 cut(s) | 427, 890 |
| AjnI | CCWGG | 1 cut(s) | 362 |
| Alw26I | GTCTC | 1 cut(s) | 137 |
| AlwI | GGATC | 1 cut(s) | 672 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 806 |
| AoxI | GGCC | 3 cut(s) | 366, 473, 607 |
| ApeKI | GCWGC | 2 cut(s) | 386, 874 |
| ApoI | RAATTY | 1 cut(s) | 432 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 628, 660 |
| AspLEI | GCGC | 3 cut(s) | 153, 615, 757 |
| AspS9I | GGNCC | 4 cut(s) | 366, 474, 586, 814 |
| AsuC2I | CCSGG | 1 cut(s) | 539 |
| AsuHPI | GGTGA | 1 cut(s) | 478 |
| AvaII | GGWCC | 2 cut(s) | 586, 814 |
| BaeGI | GKGCMC | 1 cut(s) | 67 |
| BanI | GGYRCC | 1 cut(s) | 854 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 535, 567 |
| BbvCI | CCTCAGC | 1 cut(s) | 807 |
| BbvI | GCAGC | 2 cut(s) | 373, 886 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 338, 372, 628, 662 |
| BciT130I | CCWGG | 1 cut(s) | 364 |
| BcnI | CCSGG | 1 cut(s) | 539 |
| BcoDI | GTCTC | 1 cut(s) | 137 |
| BfaI | CTAG | 1 cut(s) | 654 |
| BisI | GCNGC | 5 cut(s) | 6, 377, 387, 581, 875 |
| BlsI | GCNGC | 5 cut(s) | 7, 378, 388, 582, 876 |
| Bme1390I | CCNGG | 2 cut(s) | 364, 539 |
| Bme18I | GGWCC | 2 cut(s) | 586, 814 |
| BmgT120I | GGNCC | 4 cut(s) | 366, 474, 586, 814 |
| BmiI | GGNNCC | 4 cut(s) | 476, 815, 816, 856 |
| BmrFI | CCNGG | 2 cut(s) | 364, 539 |
| BmrI | ACTGGG | 1 cut(s) | 330 |
| BmsI | GCATC | 3 cut(s) | 118, 162, 363 |
| BmuI | ACTGGG | 1 cut(s) | 330 |
| BoxI | GACNNNNGTC | 1 cut(s) | 591 |
| Bpu10I | CCTNAGC | 1 cut(s) | 807 |
| BpuMI | CCSGG | 1 cut(s) | 539 |
| Bsa29I | ATCGAT | 1 cut(s) | 281 |
| BsaJI | CCNNGG | 3 cut(s) | 363, 538, 660 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 375 |
| Bse1I | ACTGG | 3 cut(s) | 72, 325, 718 |
| BseBI | CCWGG | 1 cut(s) | 364 |
| BseCI | ATCGAT | 1 cut(s) | 281 |
| BseDI | CCNNGG | 3 cut(s) | 363, 538, 660 |
| BseGI | GGATG | 1 cut(s) | 231 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 375 |
| BseMII | CTCAG | 1 cut(s) | 798 |
| BseNI | ACTGG | 3 cut(s) | 72, 325, 718 |
| BseSI | GKGCMC | 1 cut(s) | 67 |
| BseXI | GCAGC | 2 cut(s) | 373, 886 |
| Bsh1285I | CGRYCG | 1 cut(s) | 352 |
| BshFI | GGCC | 3 cut(s) | 368, 475, 609 |
| BshNI | GGYRCC | 1 cut(s) | 854 |
| BshVI | ATCGAT | 1 cut(s) | 281 |
| BsiEI | CGRYCG | 1 cut(s) | 352 |
| BsiSI | CCGG | 1 cut(s) | 538 |
| BslFI | GGGAC | 2 cut(s) | 302, 827 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 375 |
| BsmAI | GTCTC | 1 cut(s) | 137 |
| BsmFI | GGGAC | 2 cut(s) | 302, 827 |
| BsnI | GGCC | 3 cut(s) | 368, 475, 609 |
| Bsp1286I | GDGCHC | 1 cut(s) | 67 |
| Bsp143I | GATC | 3 cut(s) | 349, 664, 859 |
| BspACI | CCGC | 4 cut(s) | 5, 376, 580, 589 |
| BspANI | GGCC | 3 cut(s) | 368, 475, 609 |
| BspCNI | CTCAG | 1 cut(s) | 799 |
| BspDI | ATCGAT | 1 cut(s) | 281 |
| BspLI | GGNNCC | 4 cut(s) | 476, 815, 816, 856 |
| BspPI | GGATC | 1 cut(s) | 672 |
| BspT107I | GGYRCC | 1 cut(s) | 854 |
| BsrBI | CCGCTC | 1 cut(s) | 580 |
| BsrI | ACTGG | 3 cut(s) | 72, 325, 718 |
| BssECI | CCNNGG | 3 cut(s) | 363, 538, 660 |
| BssMI | GATC | 3 cut(s) | 349, 664, 859 |
| Bst2UI | CCWGG | 1 cut(s) | 364 |
| Bst4CI | ACNGT | 3 cut(s) | 32, 443, 764 |
| Bst6I | CTCTTC | 1 cut(s) | 768 |
| BstC8I | GCNNGC | 1 cut(s) | 611 |
| BstDEI | CTNAG | 1 cut(s) | 807 |
| BstF5I | GGATG | 1 cut(s) | 231 |
| BstHHI | GCGC | 3 cut(s) | 153, 615, 757 |
| BstKTI | GATC | 3 cut(s) | 352, 667, 862 |
| BstMAI | GTCTC | 1 cut(s) | 137 |
| BstMBI | GATC | 3 cut(s) | 349, 664, 859 |
| BstMCI | CGRYCG | 1 cut(s) | 352 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 365 |
| BstNI | CCWGG | 1 cut(s) | 364 |
| BstNSI | RCATGY | 2 cut(s) | 248, 272 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 591 |
| BstSCI | CCNGG | 2 cut(s) | 362, 537 |
| BstSLI | GKGCMC | 1 cut(s) | 67 |
| BstV1I | GCAGC | 2 cut(s) | 373, 886 |
| Bsu15I | ATCGAT | 1 cut(s) | 281 |
| BsuRI | GGCC | 3 cut(s) | 368, 475, 609 |
| BsuTUI | ATCGAT | 1 cut(s) | 281 |
| BtsCI | GGATG | 1 cut(s) | 231 |
| BtsIMutI | CAGTG | 2 cut(s) | 65, 769 |
| Cac8I | GCNNGC | 1 cut(s) | 611 |
| CaiI | CAGNNNCTG | 1 cut(s) | 806 |
| CfoI | GCGC | 3 cut(s) | 153, 615, 757 |
| Cfr13I | GGNCC | 4 cut(s) | 366, 474, 586, 814 |
| ClaI | ATCGAT | 1 cut(s) | 281 |
| Csp6I | GTAC | 1 cut(s) | 444 |
| CviAII | CATG | 6 cut(s) | 96, 245, 269, 356, 405, 870 |
| CviJI | RGCY | 9 cut(s) | 8, 297, 368, 475, 546, 583, 609, 672, 806 |
| CviKI_1 | RGCY | 9 cut(s) | 8, 297, 368, 475, 546, 583, 609, 672, 806 |
| CviQI | GTAC | 1 cut(s) | 444 |
| DdeI | CTNAG | 1 cut(s) | 807 |
| DpnI | GATC | 3 cut(s) | 351, 666, 861 |
| DpnII | GATC | 3 cut(s) | 349, 664, 859 |
| Eam1104I | CTCTTC | 1 cut(s) | 768 |
| EarI | CTCTTC | 1 cut(s) | 768 |
| Eco47I | GGWCC | 2 cut(s) | 586, 814 |
| Eco57I | CTGAAG | 1 cut(s) | 478 |
| EcoO109I | RGGNCCY | 2 cut(s) | 474, 814 |
| EcoRII | CCWGG | 1 cut(s) | 362 |
| FaeI | CATG | 6 cut(s) | 99, 248, 272, 359, 408, 873 |
| FaqI | GGGAC | 2 cut(s) | 302, 827 |
| FatI | CATG | 6 cut(s) | 95, 244, 268, 355, 404, 869 |
| FblI | GTMKAC | 1 cut(s) | 72 |
| Fnu4HI | GCNGC | 5 cut(s) | 6, 377, 387, 581, 875 |
| FokI | GGATG | 1 cut(s) | 238 |
| Fsp4HI | GCNGC | 5 cut(s) | 6, 377, 387, 581, 875 |
| FspBI | CTAG | 1 cut(s) | 654 |
| FspI | TGCGCA | 2 cut(s) | 152, 614 |
| GlaI | GCGC | 3 cut(s) | 152, 614, 756 |
| GluI | GCNGC | 5 cut(s) | 6, 377, 387, 581, 875 |
| HaeIII | GGCC | 3 cut(s) | 368, 475, 609 |
| HapII | CCGG | 1 cut(s) | 538 |
| HhaI | GCGC | 3 cut(s) | 153, 615, 757 |
| Hin1II | CATG | 6 cut(s) | 99, 248, 272, 359, 408, 873 |
| Hin6I | GCGC | 3 cut(s) | 151, 613, 755 |
| HinP1I | GCGC | 3 cut(s) | 151, 613, 755 |
| HincII | GTYRAC | 2 cut(s) | 73, 318 |
| HindII | GTYRAC | 2 cut(s) | 73, 318 |
| HinfI | GANTC | 4 cut(s) | 16, 200, 534, 640 |
| HpaII | CCGG | 1 cut(s) | 538 |
| HphI | GGTGA | 1 cut(s) | 478 |
| Hpy166II | GTNNAC | 4 cut(s) | 73, 185, 274, 318 |
| Hpy188I | TCNGA | 5 cut(s) | 266, 497, 562, 664, 896 |
| Hpy188III | TCNNGA | 3 cut(s) | 13, 204, 437 |
| Hpy8I | GTNNAC | 4 cut(s) | 73, 185, 274, 318 |
| Hpy99I | CGWCG | 1 cut(s) | 640 |
| HpyAV | CCTTC | 3 cut(s) | 337, 502, 714 |
| HpyCH4III | ACNGT | 3 cut(s) | 32, 443, 764 |
| HpyCH4IV | ACGT | 2 cut(s) | 58, 276 |
| HpyCH4V | TGCA | 6 cut(s) | 338, 359, 487, 649, 698, 709 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 365 |
| HpyF3I | CTNAG | 1 cut(s) | 807 |
| HpySE526I | ACGT | 2 cut(s) | 58, 276 |
| Hsp92II | CATG | 6 cut(s) | 99, 248, 272, 359, 408, 873 |
| HspAI | GCGC | 3 cut(s) | 151, 613, 755 |
| KflI | GGGWCCC | 1 cut(s) | 814 |
| Kzo9I | GATC | 3 cut(s) | 349, 664, 859 |
| Lsp1109I | GCAGC | 2 cut(s) | 373, 886 |
| LweI | GCATC | 3 cut(s) | 118, 162, 363 |
| MaeI | CTAG | 1 cut(s) | 654 |
| MaeII | ACGT | 2 cut(s) | 58, 276 |
| MalI | GATC | 3 cut(s) | 351, 666, 861 |
| MbiI | CCGCTC | 1 cut(s) | 580 |
| MboI | GATC | 3 cut(s) | 349, 664, 859 |
| MboII | GAAGA | 3 cut(s) | 387, 785, 850 |
| MhlI | GDGCHC | 1 cut(s) | 67 |
| MluCI | AATT | 8 cut(s) | 39, 172, 210, 253, 432, 522, 746, 890 |
| MlyI | GAGTC | 2 cut(s) | 209, 634 |
| MnlI | CCTC | 9 cut(s) | 200, 249, 287, 306, 455, 670, 769, 796, 802 |
| MseI | TTAA | 4 cut(s) | 81, 410, 521, 843 |
| MspI | CCGG | 1 cut(s) | 538 |
| MspR9I | CCNGG | 2 cut(s) | 364, 539 |
| MvaI | CCWGG | 1 cut(s) | 364 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 365 |
| NciI | CCSGG | 1 cut(s) | 539 |
| NdeII | GATC | 3 cut(s) | 349, 664, 859 |
| NlaIII | CATG | 6 cut(s) | 99, 248, 272, 359, 408, 873 |
| NlaIV | GGNNCC | 4 cut(s) | 476, 815, 816, 856 |
| NsbI | TGCGCA | 2 cut(s) | 152, 614 |
| NspI | RCATGY | 2 cut(s) | 248, 272 |
| PciI | ACATGT | 2 cut(s) | 244, 268 |
| PfeI | GAWTC | 2 cut(s) | 16, 534 |
| PkrI | GCNGC | 5 cut(s) | 7, 378, 388, 582, 876 |
| Ple19I | CGATCG | 1 cut(s) | 352 |
| PleI | GAGTC | 2 cut(s) | 208, 634 |
| PpsI | GAGTC | 2 cut(s) | 208, 634 |
| PpuMI | RGGWCCY | 1 cut(s) | 814 |
| PscI | ACATGT | 2 cut(s) | 244, 268 |
| PshAI | GACNNNNGTC | 1 cut(s) | 591 |
| Psp5II | RGGWCCY | 1 cut(s) | 814 |
| Psp6I | CCWGG | 1 cut(s) | 362 |
| PspGI | CCWGG | 1 cut(s) | 362 |
| PspN4I | GGNNCC | 4 cut(s) | 476, 815, 816, 856 |
| PspPI | GGNCC | 4 cut(s) | 366, 474, 586, 814 |
| PspPPI | RGGWCCY | 1 cut(s) | 814 |
| PstNI | CAGNNNCTG | 1 cut(s) | 806 |
| PvuI | CGATCG | 1 cut(s) | 352 |
| RsaI | GTAC | 1 cut(s) | 445 |
| RsaNI | GTAC | 1 cut(s) | 444 |
| SalI | GTCGAC | 1 cut(s) | 71 |
| SaqAI | TTAA | 4 cut(s) | 81, 410, 521, 843 |
| SatI | GCNGC | 5 cut(s) | 6, 377, 387, 581, 875 |
| Sau3AI | GATC | 3 cut(s) | 349, 664, 859 |
| Sau96I | GGNCC | 4 cut(s) | 366, 474, 586, 814 |
| SchI | GAGTC | 2 cut(s) | 209, 634 |
| ScrFI | CCNGG | 2 cut(s) | 364, 539 |
| SduI | GDGCHC | 1 cut(s) | 67 |
| SfaNI | GCATC | 3 cut(s) | 118, 162, 363 |
| SinI | GGWCC | 2 cut(s) | 586, 814 |
| Sse9I | AATT | 8 cut(s) | 39, 172, 210, 253, 432, 522, 746, 890 |
| SsiI | CCGC | 4 cut(s) | 5, 376, 580, 589 |
| SspMI | CTAG | 1 cut(s) | 654 |
| StyD4I | CCNGG | 2 cut(s) | 362, 537 |
| TaaI | ACNGT | 3 cut(s) | 32, 443, 764 |
| TaiI | ACGT | 2 cut(s) | 61, 279 |
| TaqI | TCGA | 3 cut(s) | 72, 203, 281 |
| TasI | AATT | 8 cut(s) | 39, 172, 210, 253, 432, 522, 746, 890 |
| TauI | GCSGC | 3 cut(s) | 8, 379, 583 |
| TfiI | GAWTC | 2 cut(s) | 16, 534 |
| Tru1I | TTAA | 4 cut(s) | 81, 410, 521, 843 |
| Tru9I | TTAA | 4 cut(s) | 81, 410, 521, 843 |
| TscAI | CASTG | 2 cut(s) | 72, 769 |
| TseI | GCWGC | 2 cut(s) | 386, 874 |
| TspDTI | ATGAA | 4 cut(s) | 242, 321, 444, 836 |
| TspGWI | ACGGA | 1 cut(s) | 461 |
| TspRI | CASTG | 2 cut(s) | 72, 769 |
| VpaK11BI | GGWCC | 2 cut(s) | 586, 814 |
| XapI | RAATTY | 1 cut(s) | 432 |
| XceI | RCATGY | 2 cut(s) | 248, 272 |
| XmiI | GTMKAC | 1 cut(s) | 72 |
| XspI | CTAG | 1 cut(s) | 654 |