ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 282 |
| Acc36I | ACCTGC | 3 cut(s) | 114, 122, 154 |
| AccII | CGCG | 1 cut(s) | 216 |
| AciI | CCGC | 8 cut(s) | 19, 22, 54, 219, 228, 258, 283, 559 |
| AcoI | YGGCCR | 3 cut(s) | 79, 854, 875 |
| AcyI | GRCGYC | 2 cut(s) | 40, 279 |
| AfaI | GTAC | 1 cut(s) | 937 |
| AfeI | AGCGCT | 1 cut(s) | 949 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 593, 747, 773 |
| AgsI | TTSAA | 4 cut(s) | 454, 540, 795, 967 |
| AjnI | CCWGG | 2 cut(s) | 42, 479 |
| AleI | CACNNNNGTG | 1 cut(s) | 265 |
| AluBI | AGCT | 1 cut(s) | 101 |
| AluI | AGCT | 1 cut(s) | 101 |
| Alw26I | GTCTC | 2 cut(s) | 522, 664 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 146 |
| Ama87I | CYCGRG | 1 cut(s) | 3 |
| Aor51HI | AGCGCT | 1 cut(s) | 949 |
| AoxI | GGCC | 5 cut(s) | 79, 434, 828, 854, 875 |
| ApaI | GGGCCC | 1 cut(s) | 438 |
| ApeKI | GCWGC | 8 cut(s) | 101, 135, 167, 211, 709, 751, 841, 844 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 269, 301 |
| AspLEI | GCGC | 3 cut(s) | 216, 218, 950 |
| AspS9I | GGNCC | 3 cut(s) | 434, 435, 829 |
| AsuHPI | GGTGA | 3 cut(s) | 22, 513, 799 |
| AsuII | TTCGAA | 1 cut(s) | 864 |
| AvaI | CYCGRG | 1 cut(s) | 3 |
| BaeGI | GKGCMC | 1 cut(s) | 438 |
| BaeI | ACNNNNGTAYC | 4 cut(s) | 596, 596, 629, 629 |
| BalI | TGGCCA | 2 cut(s) | 856, 877 |
| BanII | GRGCYC | 1 cut(s) | 438 |
| BbvI | GCAGC | 8 cut(s) | 88, 122, 154, 223, 721, 763, 853, 856 |
| BceAI | ACGGC | 2 cut(s) | 206, 238 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 75, 109 |
| BciT130I | CCWGG | 2 cut(s) | 44, 481 |
| BcoDI | GTCTC | 2 cut(s) | 522, 664 |
| BfaI | CTAG | 2 cut(s) | 467, 493 |
| BfmI | CTRYAG | 3 cut(s) | 64, 115, 402 |
| BfoI | RGCGCY | 1 cut(s) | 951 |
| BfuAI | ACCTGC | 3 cut(s) | 114, 122, 154 |
| BglII | AGATCT | 1 cut(s) | 60 |
| Bme1390I | CCNGG | 2 cut(s) | 44, 481 |
| BmeT110I | CYCGRG | 1 cut(s) | 3 |
| BmgT120I | GGNCC | 3 cut(s) | 434, 435, 829 |
| BmiI | GGNNCC | 2 cut(s) | 436, 831 |
| BmrFI | CCNGG | 2 cut(s) | 44, 481 |
| BmsI | GCATC | 2 cut(s) | 176, 504 |
| BpmI | CTGGAG | 2 cut(s) | 176, 845 |
| Bpu14I | TTCGAA | 1 cut(s) | 864 |
| BsaAI | YACGTR | 1 cut(s) | 923 |
| BsaBI | GATNNNNATC | 1 cut(s) | 627 |
| BsaHI | GRCGYC | 2 cut(s) | 40, 279 |
| BsaJI | CCNNGG | 4 cut(s) | 43, 746, 772, 851 |
| BsaWI | WCCGGW | 1 cut(s) | 31 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 593, 747, 773 |
| Bse118I | RCCGGY | 1 cut(s) | 81 |
| Bse1I | ACTGG | 2 cut(s) | 326, 696 |
| Bse8I | GATNNNNATC | 1 cut(s) | 627 |
| BseBI | CCWGG | 2 cut(s) | 44, 481 |
| BseDI | CCNNGG | 4 cut(s) | 43, 746, 772, 851 |
| BseGI | GGATG | 1 cut(s) | 585 |
| BseJI | GATNNNNATC | 1 cut(s) | 627 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 593, 747, 773 |
| BseMII | CTCAG | 2 cut(s) | 391, 589 |
| BseNI | ACTGG | 2 cut(s) | 326, 696 |
| BsePI | GCGCGC | 1 cut(s) | 214 |
| BseRI | GAGGAG | 2 cut(s) | 373, 682 |
| BseSI | GKGCMC | 1 cut(s) | 438 |
| BseXI | GCAGC | 8 cut(s) | 88, 122, 154, 223, 721, 763, 853, 856 |
| BsgI | GTGCAG | 1 cut(s) | 294 |
| Bsh1236I | CGCG | 1 cut(s) | 216 |
| BshFI | GGCC | 5 cut(s) | 81, 436, 830, 856, 877 |
| BsiHKCI | CYCGRG | 1 cut(s) | 3 |
| BsiSI | CCGG | 2 cut(s) | 32, 82 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 593, 747, 773 |
| BsmAI | GTCTC | 2 cut(s) | 522, 664 |
| BsmI | GAATGC | 1 cut(s) | 603 |
| BsnI | GGCC | 5 cut(s) | 81, 436, 830, 856, 877 |
| BsoBI | CYCGRG | 1 cut(s) | 3 |
| Bsp119I | TTCGAA | 1 cut(s) | 864 |
| Bsp120I | GGGCCC | 1 cut(s) | 434 |
| Bsp1286I | GDGCHC | 1 cut(s) | 438 |
| Bsp143I | GATC | 4 cut(s) | 60, 590, 622, 628 |
| Bsp19I | CCATGG | 3 cut(s) | 746, 772, 851 |
| BspACI | CCGC | 8 cut(s) | 19, 22, 54, 219, 228, 258, 283, 559 |
| BspANI | GGCC | 5 cut(s) | 81, 436, 830, 856, 877 |
| BspCNI | CTCAG | 2 cut(s) | 390, 588 |
| BspFNI | CGCG | 1 cut(s) | 216 |
| BspLI | GGNNCC | 2 cut(s) | 436, 831 |
| BspMAI | CTGCAG | 3 cut(s) | 68, 119, 406 |
| BspMI | ACCTGC | 3 cut(s) | 114, 122, 154 |
| BspQI | GCTCTTC | 1 cut(s) | 831 |
| BspT104I | TTCGAA | 1 cut(s) | 864 |
| BsrFI | RCCGGY | 1 cut(s) | 81 |
| BsrI | ACTGG | 2 cut(s) | 326, 696 |
| BssAI | RCCGGY | 1 cut(s) | 81 |
| BssECI | CCNNGG | 4 cut(s) | 43, 746, 772, 851 |
| BssHII | GCGCGC | 1 cut(s) | 214 |
| BssMI | GATC | 4 cut(s) | 60, 590, 622, 628 |
| BssNI | GRCGYC | 2 cut(s) | 40, 279 |
| BssT1I | CCWWGG | 3 cut(s) | 746, 772, 851 |
| Bst2UI | CCWGG | 2 cut(s) | 44, 481 |
| Bst4CI | ACNGT | 2 cut(s) | 179, 883 |
| Bst6I | CTCTTC | 1 cut(s) | 831 |
| BstACI | GRCGYC | 2 cut(s) | 40, 279 |
| BstBAI | YACGTR | 1 cut(s) | 923 |
| BstBI | TTCGAA | 1 cut(s) | 864 |
| BstC8I | GCNNGC | 5 cut(s) | 83, 209, 216, 736, 762 |
| BstDEI | CTNAG | 2 cut(s) | 377, 575 |
| BstDSI | CCRYGG | 3 cut(s) | 746, 772, 851 |
| BstF5I | GGATG | 1 cut(s) | 585 |
| BstFNI | CGCG | 1 cut(s) | 216 |
| BstH2I | RGCGCY | 1 cut(s) | 951 |
| BstHHI | GCGC | 3 cut(s) | 216, 218, 950 |
| BstKTI | GATC | 4 cut(s) | 63, 593, 625, 631 |
| BstMAI | GTCTC | 2 cut(s) | 522, 664 |
| BstMBI | GATC | 4 cut(s) | 60, 590, 622, 628 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 25, 213, 224, 227, 751, 757, 853 |
| BstNI | CCWGG | 2 cut(s) | 44, 481 |
| BstNSI | RCATGY | 2 cut(s) | 738, 764 |
| BstSCI | CCNGG | 2 cut(s) | 42, 479 |
| BstSFI | CTRYAG | 3 cut(s) | 64, 115, 402 |
| BstSLI | GKGCMC | 1 cut(s) | 438 |
| BstUI | CGCG | 1 cut(s) | 216 |
| BstV1I | GCAGC | 8 cut(s) | 88, 122, 154, 223, 721, 763, 853, 856 |
| BstX2I | RGATCY | 1 cut(s) | 60 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 532 |
| BstYI | RGATCY | 1 cut(s) | 60 |
| BsuRI | GGCC | 5 cut(s) | 81, 436, 830, 856, 877 |
| BtgI | CCRYGG | 3 cut(s) | 746, 772, 851 |
| BtsCI | GGATG | 1 cut(s) | 585 |
| BveI | ACCTGC | 3 cut(s) | 114, 122, 154 |
| Cac8I | GCNNGC | 5 cut(s) | 83, 209, 216, 736, 762 |
| CaiI | CAGNNNCTG | 1 cut(s) | 146 |
| CfoI | GCGC | 3 cut(s) | 216, 218, 950 |
| Cfr10I | RCCGGY | 1 cut(s) | 81 |
| Cfr13I | GGNCC | 3 cut(s) | 434, 435, 829 |
| CseI | GACGC | 2 cut(s) | 48, 237 |
| Csp6I | GTAC | 1 cut(s) | 936 |
| CviAII | CATG | 7 cut(s) | 610, 735, 747, 761, 773, 804, 852 |
| CviQI | GTAC | 1 cut(s) | 936 |
| DdeI | CTNAG | 2 cut(s) | 377, 575 |
| DpnI | GATC | 4 cut(s) | 62, 592, 624, 630 |
| DpnII | GATC | 4 cut(s) | 60, 590, 622, 628 |
| EaeI | YGGCCR | 3 cut(s) | 79, 854, 875 |
| Eam1104I | CTCTTC | 1 cut(s) | 831 |
| EarI | CTCTTC | 1 cut(s) | 831 |
| EciI | GGCGGA | 1 cut(s) | 69 |
| Eco130I | CCWWGG | 3 cut(s) | 746, 772, 851 |
| Eco24I | GRGCYC | 1 cut(s) | 438 |
| Eco47III | AGCGCT | 1 cut(s) | 949 |
| Eco88I | CYCGRG | 1 cut(s) | 3 |
| EcoO109I | RGGNCCY | 3 cut(s) | 434, 435, 829 |
| EcoRII | CCWGG | 2 cut(s) | 42, 479 |
| EcoT14I | CCWWGG | 3 cut(s) | 746, 772, 851 |
| EcoT38I | GRGCYC | 1 cut(s) | 438 |
| ErhI | CCWWGG | 3 cut(s) | 746, 772, 851 |
| FaeI | CATG | 7 cut(s) | 613, 738, 750, 764, 776, 807, 855 |
| FatI | CATG | 7 cut(s) | 609, 734, 746, 760, 772, 803, 851 |
| FauI | CCCGC | 1 cut(s) | 15 |
| FokI | GGATG | 1 cut(s) | 592 |
| FriOI | GRGCYC | 1 cut(s) | 438 |
| FspBI | CTAG | 2 cut(s) | 467, 493 |
| GlaI | GCGC | 3 cut(s) | 215, 217, 949 |
| GsuI | CTGGAG | 2 cut(s) | 176, 845 |
| HaeII | RGCGCY | 1 cut(s) | 951 |
| HaeIII | GGCC | 5 cut(s) | 81, 436, 830, 856, 877 |
| HapII | CCGG | 2 cut(s) | 32, 82 |
| HgaI | GACGC | 2 cut(s) | 48, 237 |
| HhaI | GCGC | 3 cut(s) | 216, 218, 950 |
| Hin1I | GRCGYC | 2 cut(s) | 40, 279 |
| Hin1II | CATG | 7 cut(s) | 613, 738, 750, 764, 776, 807, 855 |
| Hin6I | GCGC | 3 cut(s) | 214, 216, 948 |
| HinP1I | GCGC | 3 cut(s) | 214, 216, 948 |
| HinfI | GANTC | 3 cut(s) | 424, 571, 672 |
| HpaII | CCGG | 2 cut(s) | 32, 82 |
| HphI | GGTGA | 3 cut(s) | 22, 513, 799 |
| Hpy166II | GTNNAC | 2 cut(s) | 417, 938 |
| Hpy188I | TCNGA | 2 cut(s) | 183, 380 |
| Hpy188III | TCNNGA | 5 cut(s) | 355, 577, 594, 626, 824 |
| Hpy8I | GTNNAC | 2 cut(s) | 417, 938 |
| Hpy99I | CGWCG | 2 cut(s) | 227, 253 |
| HpyAV | CCTTC | 1 cut(s) | 29 |
| HpyCH4III | ACNGT | 2 cut(s) | 179, 883 |
| HpyCH4IV | ACGT | 2 cut(s) | 279, 922 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 25, 213, 224, 227, 751, 757, 853 |
| HpyF3I | CTNAG | 2 cut(s) | 377, 575 |
| HpySE526I | ACGT | 2 cut(s) | 279, 922 |
| Hsp92I | GRCGYC | 2 cut(s) | 40, 279 |
| Hsp92II | CATG | 7 cut(s) | 613, 738, 750, 764, 776, 807, 855 |
| HspAI | GCGC | 3 cut(s) | 214, 216, 948 |
| KroI | GCCGGC | 1 cut(s) | 81 |
| KroNI | GCCGGC | 1 cut(s) | 83 |
| Kzo9I | GATC | 4 cut(s) | 60, 590, 622, 628 |
| LguI | GCTCTTC | 1 cut(s) | 831 |
| LmnI | GCTCC | 1 cut(s) | 926 |
| Lsp1109I | GCAGC | 8 cut(s) | 88, 122, 154, 223, 721, 763, 853, 856 |
| LweI | GCATC | 2 cut(s) | 176, 504 |
| MaeI | CTAG | 2 cut(s) | 467, 493 |
| MaeII | ACGT | 2 cut(s) | 279, 922 |
| MaeIII | GTNAC | 3 cut(s) | 315, 363, 425 |
| MalI | GATC | 4 cut(s) | 62, 592, 624, 630 |
| MboI | GATC | 4 cut(s) | 60, 590, 622, 628 |
| MboII | GAAGA | 4 cut(s) | 346, 468, 848, 878 |
| MflI | RGATCY | 1 cut(s) | 60 |
| MhlI | GDGCHC | 1 cut(s) | 438 |
| MlsI | TGGCCA | 2 cut(s) | 856, 877 |
| MluCI | AATT | 2 cut(s) | 392, 410 |
| MluNI | TGGCCA | 2 cut(s) | 856, 877 |
| MlyI | GAGTC | 2 cut(s) | 433, 666 |
| Mox20I | TGGCCA | 2 cut(s) | 856, 877 |
| MroNI | GCCGGC | 1 cut(s) | 81 |
| MscI | TGGCCA | 2 cut(s) | 856, 877 |
| MslI | CAYNNNNRTG | 3 cut(s) | 265, 512, 644 |
| Msp20I | TGGCCA | 2 cut(s) | 856, 877 |
| MspI | CCGG | 2 cut(s) | 32, 82 |
| MspR9I | CCNGG | 2 cut(s) | 44, 481 |
| Mva1269I | GAATGC | 1 cut(s) | 603 |
| MvaI | CCWGG | 2 cut(s) | 44, 481 |
| MvnI | CGCG | 1 cut(s) | 216 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 25, 213, 224, 227, 751, 757, 853 |
| NaeI | GCCGGC | 1 cut(s) | 83 |
| NcoI | CCATGG | 3 cut(s) | 746, 772, 851 |
| NdeII | GATC | 4 cut(s) | 60, 590, 622, 628 |
| NgoMIV | GCCGGC | 1 cut(s) | 81 |
| NlaIII | CATG | 7 cut(s) | 613, 738, 750, 764, 776, 807, 855 |
| NlaIV | GGNNCC | 2 cut(s) | 436, 831 |
| NmuCI | GTSAC | 1 cut(s) | 425 |
| NspI | RCATGY | 2 cut(s) | 738, 764 |
| NspV | TTCGAA | 1 cut(s) | 864 |
| OliI | CACNNNNGTG | 1 cut(s) | 265 |
| PaeI | GCATGC | 2 cut(s) | 738, 764 |
| PauI | GCGCGC | 1 cut(s) | 214 |
| PciSI | GCTCTTC | 1 cut(s) | 831 |
| PctI | GAATGC | 1 cut(s) | 603 |
| PdiI | GCCGGC | 1 cut(s) | 83 |
| PfeI | GAWTC | 1 cut(s) | 571 |
| PleI | GAGTC | 2 cut(s) | 432, 666 |
| PpsI | GAGTC | 2 cut(s) | 432, 666 |
| Ppu21I | YACGTR | 1 cut(s) | 923 |
| Psp6I | CCWGG | 2 cut(s) | 42, 479 |
| PspGI | CCWGG | 2 cut(s) | 42, 479 |
| PspN4I | GGNNCC | 2 cut(s) | 436, 831 |
| PspOMI | GGGCCC | 1 cut(s) | 434 |
| PspPI | GGNCC | 3 cut(s) | 434, 435, 829 |
| PstI | CTGCAG | 3 cut(s) | 68, 119, 406 |
| PstNI | CAGNNNCTG | 1 cut(s) | 146 |
| PsuI | RGATCY | 1 cut(s) | 60 |
| PteI | GCGCGC | 1 cut(s) | 214 |
| RsaI | GTAC | 1 cut(s) | 937 |
| RsaNI | GTAC | 1 cut(s) | 936 |
| RseI | CAYNNNNRTG | 3 cut(s) | 265, 512, 644 |
| SapI | GCTCTTC | 1 cut(s) | 831 |
| Sau3AI | GATC | 4 cut(s) | 60, 590, 622, 628 |
| Sau96I | GGNCC | 3 cut(s) | 434, 435, 829 |
| SchI | GAGTC | 2 cut(s) | 433, 666 |
| ScrFI | CCNGG | 2 cut(s) | 44, 481 |
| SduI | GDGCHC | 1 cut(s) | 438 |
| SfaNI | GCATC | 2 cut(s) | 176, 504 |
| SfcI | CTRYAG | 3 cut(s) | 64, 115, 402 |
| SfuI | TTCGAA | 1 cut(s) | 864 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 265, 512, 644 |
| SphI | GCATGC | 2 cut(s) | 738, 764 |
| Sse9I | AATT | 2 cut(s) | 392, 410 |
| SsiI | CCGC | 8 cut(s) | 19, 22, 54, 219, 228, 258, 283, 559 |
| SspMI | CTAG | 2 cut(s) | 467, 493 |
| StyD4I | CCNGG | 2 cut(s) | 42, 479 |
| StyI | CCWWGG | 3 cut(s) | 746, 772, 851 |
| TaaI | ACNGT | 2 cut(s) | 179, 883 |
| TaiI | ACGT | 2 cut(s) | 282, 925 |
| TaqI | TCGA | 4 cut(s) | 161, 627, 808, 864 |
| TasI | AATT | 2 cut(s) | 392, 410 |
| TatI | WGTACW | 1 cut(s) | 935 |
| TauI | GCSGC | 3 cut(s) | 22, 221, 230 |
| TfiI | GAWTC | 1 cut(s) | 571 |
| TseFI | GTSAC | 1 cut(s) | 425 |
| TseI | GCWGC | 8 cut(s) | 101, 135, 167, 211, 709, 751, 841, 844 |
| Tsp45I | GTSAC | 1 cut(s) | 425 |
| TspDTI | ATGAA | 4 cut(s) | 29, 347, 518, 812 |
| TspGWI | ACGGA | 1 cut(s) | 679 |
| XceI | RCATGY | 2 cut(s) | 738, 764 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 948 |
| XspI | CTAG | 2 cut(s) | 467, 493 |
| ZraI | GACGTC | 1 cut(s) | 280 |