ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccBSI | CCGCTC | 1 cut(s) | 554 |
| AccII | CGCG | 1 cut(s) | 640 |
| AciI | CCGC | 5 cut(s) | 450, 552, 619, 640, 746 |
| AclI | AACGTT | 1 cut(s) | 406 |
| AclWI | GGATC | 1 cut(s) | 95 |
| AcuI | CTGAAG | 3 cut(s) | 679, 722, 797 |
| AfaI | GTAC | 1 cut(s) | 5 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 258, 905 |
| AgsI | TTSAA | 4 cut(s) | 53, 278, 461, 702 |
| AjnI | CCWGG | 1 cut(s) | 577 |
| Alw26I | GTCTC | 1 cut(s) | 654 |
| AlwI | GGATC | 1 cut(s) | 95 |
| AoxI | GGCC | 1 cut(s) | 566 |
| ApeKI | GCWGC | 2 cut(s) | 62, 776 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 197, 229 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 407 |
| AspS9I | GGNCC | 4 cut(s) | 367, 567, 581, 743 |
| AsuC2I | CCSGG | 2 cut(s) | 565, 863 |
| AsuHPI | GGTGA | 3 cut(s) | 110, 446, 789 |
| AsuII | TTCGAA | 1 cut(s) | 417 |
| AvaII | GGWCC | 3 cut(s) | 367, 581, 743 |
| BanII | GRGCYC | 1 cut(s) | 646 |
| BbsI | GAAGAC | 1 cut(s) | 728 |
| BbvI | GCAGC | 2 cut(s) | 74, 788 |
| BceAI | ACGGC | 1 cut(s) | 733 |
| BciT130I | CCWGG | 1 cut(s) | 579 |
| BclI | TGATCA | 1 cut(s) | 343 |
| BcnI | CCSGG | 2 cut(s) | 565, 863 |
| BcoDI | GTCTC | 1 cut(s) | 654 |
| BfaI | CTAG | 1 cut(s) | 59 |
| BisI | GCNGC | 3 cut(s) | 63, 450, 777 |
| BlsI | GCNGC | 3 cut(s) | 64, 451, 778 |
| Bme1390I | CCNGG | 3 cut(s) | 565, 579, 863 |
| Bme18I | GGWCC | 3 cut(s) | 367, 581, 743 |
| BmgT120I | GGNCC | 4 cut(s) | 367, 567, 581, 743 |
| BmiI | GGNNCC | 3 cut(s) | 604, 645, 744 |
| BmrFI | CCNGG | 3 cut(s) | 565, 579, 863 |
| BmrI | ACTGGG | 1 cut(s) | 775 |
| BmuI | ACTGGG | 1 cut(s) | 775 |
| BoxI | GACNNNNGTC | 1 cut(s) | 748 |
| BpiI | GAAGAC | 1 cut(s) | 728 |
| BpmI | CTGGAG | 1 cut(s) | 156 |
| Bpu14I | TTCGAA | 1 cut(s) | 417 |
| BpuMI | CCSGG | 2 cut(s) | 565, 863 |
| BsaAI | YACGTR | 1 cut(s) | 234 |
| BsaJI | CCNNGG | 2 cut(s) | 83, 252 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 527, 557 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 258, 905 |
| Bse118I | RCCGGY | 2 cut(s) | 599, 709 |
| Bse1I | ACTGG | 2 cut(s) | 781, 786 |
| BseBI | CCWGG | 1 cut(s) | 579 |
| BseDI | CCNNGG | 2 cut(s) | 83, 252 |
| BseGI | GGATG | 2 cut(s) | 382, 669 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 258, 905 |
| BseMII | CTCAG | 1 cut(s) | 888 |
| BseNI | ACTGG | 2 cut(s) | 781, 786 |
| BseRI | GAGGAG | 1 cut(s) | 862 |
| BseXI | GCAGC | 2 cut(s) | 74, 788 |
| BsgI | GTGCAG | 2 cut(s) | 174, 551 |
| Bsh1236I | CGCG | 1 cut(s) | 640 |
| BshFI | GGCC | 1 cut(s) | 568 |
| BsiSI | CCGG | 4 cut(s) | 565, 600, 710, 862 |
| BslFI | GGGAC | 1 cut(s) | 756 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 258, 905 |
| BsmAI | GTCTC | 1 cut(s) | 654 |
| BsmBI | CGTCTC | 1 cut(s) | 654 |
| BsmFI | GGGAC | 1 cut(s) | 756 |
| BsnI | GGCC | 1 cut(s) | 568 |
| Bsp119I | TTCGAA | 1 cut(s) | 417 |
| Bsp1286I | GDGCHC | 1 cut(s) | 646 |
| Bsp143I | GATC | 9 cut(s) | 76, 87, 343, 594, 635, 660, 681, 704, 724 |
| Bsp19I | CCATGG | 1 cut(s) | 83 |
| BspACI | CCGC | 5 cut(s) | 450, 552, 619, 640, 746 |
| BspANI | GGCC | 1 cut(s) | 568 |
| BspCNI | CTCAG | 1 cut(s) | 887 |
| BspFNI | CGCG | 1 cut(s) | 640 |
| BspLI | GGNNCC | 3 cut(s) | 604, 645, 744 |
| BspPI | GGATC | 1 cut(s) | 95 |
| BspT104I | TTCGAA | 1 cut(s) | 417 |
| BsrBI | CCGCTC | 1 cut(s) | 554 |
| BsrFI | RCCGGY | 2 cut(s) | 599, 709 |
| BsrI | ACTGG | 2 cut(s) | 781, 786 |
| BssAI | RCCGGY | 2 cut(s) | 599, 709 |
| BssECI | CCNNGG | 2 cut(s) | 83, 252 |
| BssMI | GATC | 9 cut(s) | 76, 87, 343, 594, 635, 660, 681, 704, 724 |
| BssT1I | CCWWGG | 2 cut(s) | 83, 252 |
| Bst2UI | CCWGG | 1 cut(s) | 579 |
| Bst4CI | ACNGT | 2 cut(s) | 8, 357 |
| Bst6I | CTCTTC | 2 cut(s) | 414, 761 |
| BstBAI | YACGTR | 1 cut(s) | 234 |
| BstBI | TTCGAA | 1 cut(s) | 417 |
| BstC8I | GCNNGC | 5 cut(s) | 19, 298, 601, 642, 711 |
| BstDEI | CTNAG | 1 cut(s) | 874 |
| BstDSI | CCRYGG | 1 cut(s) | 83 |
| BstF5I | GGATG | 2 cut(s) | 382, 669 |
| BstFNI | CGCG | 1 cut(s) | 640 |
| BstKTI | GATC | 9 cut(s) | 79, 90, 346, 597, 638, 663, 684, 707, 727 |
| BstMAI | GTCTC | 1 cut(s) | 654 |
| BstMBI | GATC | 9 cut(s) | 76, 87, 343, 594, 635, 660, 681, 704, 724 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 166, 175, 574 |
| BstNI | CCWGG | 1 cut(s) | 579 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 748 |
| BstSCI | CCNGG | 3 cut(s) | 563, 577, 861 |
| BstUI | CGCG | 1 cut(s) | 640 |
| BstV1I | GCAGC | 2 cut(s) | 74, 788 |
| BstV2I | GAAGAC | 1 cut(s) | 728 |
| BsuRI | GGCC | 1 cut(s) | 568 |
| BtgI | CCRYGG | 1 cut(s) | 83 |
| BtsCI | GGATG | 2 cut(s) | 382, 669 |
| BtsI | GCAGTG | 2 cut(s) | 162, 293 |
| BtsIMutI | CAGTG | 4 cut(s) | 162, 293, 353, 882 |
| Cac8I | GCNNGC | 5 cut(s) | 19, 298, 601, 642, 711 |
| Cfr10I | RCCGGY | 2 cut(s) | 599, 709 |
| Cfr13I | GGNCC | 4 cut(s) | 367, 567, 581, 743 |
| Csp6I | GTAC | 1 cut(s) | 4 |
| CviAII | CATG | 5 cut(s) | 39, 84, 91, 208, 431 |
| CviQI | GTAC | 1 cut(s) | 4 |
| DdeI | CTNAG | 1 cut(s) | 874 |
| DpnI | GATC | 9 cut(s) | 78, 89, 345, 596, 637, 662, 683, 706, 726 |
| DpnII | GATC | 9 cut(s) | 76, 87, 343, 594, 635, 660, 681, 704, 724 |
| Eam1104I | CTCTTC | 2 cut(s) | 414, 761 |
| EarI | CTCTTC | 2 cut(s) | 414, 761 |
| Eco130I | CCWWGG | 2 cut(s) | 83, 252 |
| Eco24I | GRGCYC | 1 cut(s) | 646 |
| Eco47I | GGWCC | 3 cut(s) | 367, 581, 743 |
| Eco57I | CTGAAG | 3 cut(s) | 679, 722, 797 |
| EcoRII | CCWGG | 1 cut(s) | 577 |
| EcoT14I | CCWWGG | 2 cut(s) | 83, 252 |
| EcoT38I | GRGCYC | 1 cut(s) | 646 |
| ErhI | CCWWGG | 2 cut(s) | 83, 252 |
| Esp3I | CGTCTC | 1 cut(s) | 654 |
| FaeI | CATG | 5 cut(s) | 42, 87, 94, 211, 434 |
| FaqI | GGGAC | 1 cut(s) | 756 |
| FatI | CATG | 5 cut(s) | 38, 83, 90, 207, 430 |
| FauI | CCCGC | 1 cut(s) | 633 |
| FbaI | TGATCA | 1 cut(s) | 343 |
| Fnu4HI | GCNGC | 3 cut(s) | 63, 450, 777 |
| FokI | GGATG | 2 cut(s) | 389, 656 |
| FriOI | GRGCYC | 1 cut(s) | 646 |
| Fsp4HI | GCNGC | 3 cut(s) | 63, 450, 777 |
| FspBI | CTAG | 1 cut(s) | 59 |
| GluI | GCNGC | 3 cut(s) | 63, 450, 777 |
| GsuI | CTGGAG | 1 cut(s) | 156 |
| HaeIII | GGCC | 1 cut(s) | 568 |
| HapII | CCGG | 4 cut(s) | 565, 600, 710, 862 |
| Hin1II | CATG | 5 cut(s) | 42, 87, 94, 211, 434 |
| HincII | GTYRAC | 2 cut(s) | 884, 892 |
| HindII | GTYRAC | 2 cut(s) | 884, 892 |
| HinfI | GANTC | 3 cut(s) | 338, 437, 880 |
| HpaII | CCGG | 4 cut(s) | 565, 600, 710, 862 |
| HphI | GGTGA | 3 cut(s) | 110, 446, 789 |
| Hpy166II | GTNNAC | 4 cut(s) | 561, 797, 884, 892 |
| Hpy188I | TCNGA | 7 cut(s) | 25, 337, 343, 371, 616, 635, 859 |
| Hpy188III | TCNNGA | 7 cut(s) | 135, 385, 592, 658, 679, 702, 828 |
| Hpy8I | GTNNAC | 4 cut(s) | 561, 797, 884, 892 |
| Hpy99I | CGWCG | 3 cut(s) | 337, 776, 826 |
| HpyAV | CCTTC | 2 cut(s) | 580, 664 |
| HpyCH4III | ACNGT | 2 cut(s) | 8, 357 |
| HpyCH4IV | ACGT | 4 cut(s) | 28, 233, 406, 821 |
| HpyCH4V | TGCA | 4 cut(s) | 155, 286, 532, 792 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 166, 175, 574 |
| HpyF3I | CTNAG | 1 cut(s) | 874 |
| HpySE526I | ACGT | 4 cut(s) | 28, 233, 406, 821 |
| Hsp92II | CATG | 5 cut(s) | 42, 87, 94, 211, 434 |
| KroI | GCCGGC | 2 cut(s) | 599, 709 |
| KroNI | GCCGGC | 2 cut(s) | 601, 711 |
| Ksp22I | TGATCA | 1 cut(s) | 343 |
| Kzo9I | GATC | 9 cut(s) | 76, 87, 343, 594, 635, 660, 681, 704, 724 |
| LmnI | GCTCC | 5 cut(s) | 333, 559, 608, 649, 875 |
| Lsp1109I | GCAGC | 2 cut(s) | 74, 788 |
| MaeI | CTAG | 1 cut(s) | 59 |
| MaeII | ACGT | 4 cut(s) | 28, 233, 406, 821 |
| MaeIII | GTNAC | 2 cut(s) | 434, 750 |
| MalI | GATC | 9 cut(s) | 78, 89, 345, 596, 637, 662, 683, 706, 726 |
| MbiI | CCGCTC | 1 cut(s) | 554 |
| MboI | GATC | 9 cut(s) | 76, 87, 343, 594, 635, 660, 681, 704, 724 |
| MboII | GAAGA | 5 cut(s) | 431, 685, 728, 748, 803 |
| MhlI | GDGCHC | 1 cut(s) | 646 |
| MluCI | AATT | 2 cut(s) | 481, 767 |
| MlyI | GAGTC | 2 cut(s) | 431, 889 |
| MmeI | TCCRAC | 1 cut(s) | 315 |
| MnlI | CCTC | 8 cut(s) | 125, 131, 156, 263, 358, 617, 636, 883 |
| MroNI | GCCGGC | 2 cut(s) | 599, 709 |
| MroXI | GAANNNNTTC | 1 cut(s) | 407 |
| MseI | TTAA | 1 cut(s) | 105 |
| MspI | CCGG | 4 cut(s) | 565, 600, 710, 862 |
| MspR9I | CCNGG | 3 cut(s) | 565, 579, 863 |
| MvaI | CCWGG | 1 cut(s) | 579 |
| MvnI | CGCG | 1 cut(s) | 640 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 166, 175, 574 |
| NaeI | GCCGGC | 2 cut(s) | 601, 711 |
| NciI | CCSGG | 2 cut(s) | 565, 863 |
| NcoI | CCATGG | 1 cut(s) | 83 |
| NdeII | GATC | 9 cut(s) | 76, 87, 343, 594, 635, 660, 681, 704, 724 |
| NgoMIV | GCCGGC | 2 cut(s) | 599, 709 |
| NlaIII | CATG | 5 cut(s) | 42, 87, 94, 211, 434 |
| NlaIV | GGNNCC | 3 cut(s) | 604, 645, 744 |
| NmuCI | GTSAC | 2 cut(s) | 434, 750 |
| NspV | TTCGAA | 1 cut(s) | 417 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 25, 644 |
| PdiI | GCCGGC | 2 cut(s) | 601, 711 |
| PdmI | GAANNNNTTC | 1 cut(s) | 407 |
| PfeI | GAWTC | 1 cut(s) | 338 |
| PkrI | GCNGC | 3 cut(s) | 64, 451, 778 |
| PleI | GAGTC | 2 cut(s) | 431, 888 |
| PpsI | GAGTC | 2 cut(s) | 431, 888 |
| Ppu21I | YACGTR | 1 cut(s) | 234 |
| PshAI | GACNNNNGTC | 1 cut(s) | 748 |
| Psp1406I | AACGTT | 1 cut(s) | 406 |
| Psp6I | CCWGG | 1 cut(s) | 577 |
| PspGI | CCWGG | 1 cut(s) | 577 |
| PspN4I | GGNNCC | 3 cut(s) | 604, 645, 744 |
| PspPI | GGNCC | 4 cut(s) | 367, 567, 581, 743 |
| RsaI | GTAC | 1 cut(s) | 5 |
| RsaNI | GTAC | 1 cut(s) | 4 |
| SaqAI | TTAA | 1 cut(s) | 105 |
| SatI | GCNGC | 3 cut(s) | 63, 450, 777 |
| Sau3AI | GATC | 9 cut(s) | 76, 87, 343, 594, 635, 660, 681, 704, 724 |
| Sau96I | GGNCC | 4 cut(s) | 367, 567, 581, 743 |
| SchI | GAGTC | 2 cut(s) | 431, 889 |
| ScrFI | CCNGG | 3 cut(s) | 565, 579, 863 |
| SduI | GDGCHC | 1 cut(s) | 646 |
| SetI | ASST | 8 cut(s) | 31, 142, 236, 274, 369, 409, 516, 824 |
| SfuI | TTCGAA | 1 cut(s) | 417 |
| SinI | GGWCC | 3 cut(s) | 367, 581, 743 |
| Sse9I | AATT | 2 cut(s) | 481, 767 |
| SsiI | CCGC | 5 cut(s) | 450, 552, 619, 640, 746 |
| SspMI | CTAG | 1 cut(s) | 59 |
| StyD4I | CCNGG | 3 cut(s) | 563, 577, 861 |
| StyI | CCWWGG | 2 cut(s) | 83, 252 |
| TaaI | ACNGT | 2 cut(s) | 8, 357 |
| TaiI | ACGT | 4 cut(s) | 31, 236, 409, 824 |
| TaqI | TCGA | 2 cut(s) | 148, 417 |
| TaqII | GACCGA | 1 cut(s) | 896 |
| TasI | AATT | 2 cut(s) | 481, 767 |
| TatI | WGTACW | 1 cut(s) | 3 |
| TauI | GCSGC | 1 cut(s) | 452 |
| TfiI | GAWTC | 1 cut(s) | 338 |
| Tru1I | TTAA | 1 cut(s) | 105 |
| Tru9I | TTAA | 1 cut(s) | 105 |
| TscAI | CASTG | 4 cut(s) | 162, 293, 360, 882 |
| TseFI | GTSAC | 2 cut(s) | 434, 750 |
| TseI | GCWGC | 2 cut(s) | 62, 776 |
| Tsp45I | GTSAC | 2 cut(s) | 434, 750 |
| TspDTI | ATGAA | 4 cut(s) | 123, 494, 658, 679 |
| TspGWI | ACGGA | 3 cut(s) | 546, 636, 751 |
| TspRI | CASTG | 4 cut(s) | 162, 293, 360, 882 |
| VpaK11BI | GGWCC | 3 cut(s) | 367, 581, 743 |
| XmnI | GAANNNNTTC | 1 cut(s) | 407 |
| XspI | CTAG | 1 cut(s) | 59 |