ribonuclease H protein
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 313 |
| Acc36I | ACCTGC | 1 cut(s) | 313 |
| AccBSI | CCGCTC | 1 cut(s) | 355 |
| AciI | CCGC | 1 cut(s) | 355 |
| AcoI | YGGCCR | 1 cut(s) | 513 |
| AcsI | RAATTY | 1 cut(s) | 496 |
| AcyI | GRCGYC | 1 cut(s) | 358 |
| AfaI | GTAC | 2 cut(s) | 253, 471 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 222, 479 |
| AgsI | TTSAA | 4 cut(s) | 152, 380, 433, 496 |
| AluBI | AGCT | 3 cut(s) | 99, 344, 519 |
| AluI | AGCT | 3 cut(s) | 99, 344, 519 |
| Alw21I | GWGCWC | 2 cut(s) | 304, 487 |
| Alw26I | GTCTC | 1 cut(s) | 110 |
| Alw44I | GTGCAC | 1 cut(s) | 300 |
| AoxI | GGCC | 2 cut(s) | 92, 513 |
| ApaLI | GTGCAC | 1 cut(s) | 300 |
| ApeKI | GCWGC | 2 cut(s) | 341, 389 |
| ApoI | RAATTY | 1 cut(s) | 496 |
| AspA2I | CCTAGG | 1 cut(s) | 473 |
| AspS9I | GGNCC | 1 cut(s) | 370 |
| AsuHPI | GGTGA | 2 cut(s) | 252, 437 |
| AsuNHI | GCTAGC | 1 cut(s) | 82 |
| AvaII | GGWCC | 1 cut(s) | 370 |
| AvrII | CCTAGG | 1 cut(s) | 473 |
| BaeGI | GKGCMC | 1 cut(s) | 304 |
| BalI | TGGCCA | 1 cut(s) | 515 |
| BbsI | GAAGAC | 1 cut(s) | 459 |
| Bbv12I | GWGCWC | 2 cut(s) | 304, 487 |
| BbvCI | CCTCAGC | 1 cut(s) | 393 |
| BbvI | GCAGC | 2 cut(s) | 353, 376 |
| BccI | CCATC | 1 cut(s) | 191 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 269, 303 |
| BcoDI | GTCTC | 1 cut(s) | 110 |
| BfaI | CTAG | 4 cut(s) | 77, 83, 345, 474 |
| BfmI | CTRYAG | 1 cut(s) | 288 |
| BfuAI | ACCTGC | 1 cut(s) | 313 |
| BisI | GCNGC | 3 cut(s) | 342, 356, 390 |
| BlnI | CCTAGG | 1 cut(s) | 473 |
| BlsI | GCNGC | 3 cut(s) | 343, 357, 391 |
| Bme18I | GGWCC | 1 cut(s) | 370 |
| BmgT120I | GGNCC | 1 cut(s) | 370 |
| BmiI | GGNNCC | 1 cut(s) | 371 |
| BmsI | GCATC | 2 cut(s) | 265, 336 |
| BmtI | GCTAGC | 1 cut(s) | 86 |
| BpiI | GAAGAC | 1 cut(s) | 459 |
| Bpu10I | CCTNAGC | 1 cut(s) | 393 |
| BpuEI | CTTGAG | 1 cut(s) | 174 |
| BsaAI | YACGTR | 1 cut(s) | 251 |
| BsaHI | GRCGYC | 1 cut(s) | 358 |
| BsaI | GGTCTC | 1 cut(s) | 110 |
| BsaJI | CCNNGG | 2 cut(s) | 410, 473 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 222, 479 |
| Bse1I | ACTGG | 1 cut(s) | 328 |
| Bse3DI | GCAATG | 1 cut(s) | 454 |
| BseDI | CCNNGG | 2 cut(s) | 410, 473 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 222, 479 |
| BseMI | GCAATG | 1 cut(s) | 454 |
| BseMII | CTCAG | 2 cut(s) | 105, 384 |
| BseNI | ACTGG | 1 cut(s) | 328 |
| BseSI | GKGCMC | 1 cut(s) | 304 |
| BseXI | GCAGC | 2 cut(s) | 353, 376 |
| BshFI | GGCC | 2 cut(s) | 94, 515 |
| BsiHKAI | GWGCWC | 2 cut(s) | 304, 487 |
| BslFI | GGGAC | 1 cut(s) | 383 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 222, 479 |
| BsmAI | GTCTC | 1 cut(s) | 110 |
| BsmFI | GGGAC | 1 cut(s) | 383 |
| BsmI | GAATGC | 1 cut(s) | 232 |
| BsnI | GGCC | 2 cut(s) | 94, 515 |
| Bso31I | GGTCTC | 1 cut(s) | 110 |
| Bsp1286I | GDGCHC | 2 cut(s) | 304, 487 |
| Bsp143I | GATC | 2 cut(s) | 73, 102 |
| Bsp19I | CCATGG | 1 cut(s) | 410 |
| BspACI | CCGC | 1 cut(s) | 355 |
| BspANI | GGCC | 2 cut(s) | 94, 515 |
| BspCNI | CTCAG | 2 cut(s) | 106, 385 |
| BspLI | GGNNCC | 1 cut(s) | 371 |
| BspMAI | CTGCAG | 1 cut(s) | 292 |
| BspMI | ACCTGC | 1 cut(s) | 313 |
| BspOI | GCTAGC | 1 cut(s) | 86 |
| BspTNI | GGTCTC | 1 cut(s) | 110 |
| BsrBI | CCGCTC | 1 cut(s) | 355 |
| BsrDI | GCAATG | 1 cut(s) | 454 |
| BsrI | ACTGG | 1 cut(s) | 328 |
| BssECI | CCNNGG | 2 cut(s) | 410, 473 |
| BssMI | GATC | 2 cut(s) | 73, 102 |
| BssNI | GRCGYC | 1 cut(s) | 358 |
| BssT1I | CCWWGG | 2 cut(s) | 410, 473 |
| Bst4CI | ACNGT | 1 cut(s) | 50 |
| Bst6I | CTCTTC | 1 cut(s) | 153 |
| BstACI | GRCGYC | 1 cut(s) | 358 |
| BstBAI | YACGTR | 1 cut(s) | 251 |
| BstC8I | GCNNGC | 3 cut(s) | 63, 84, 517 |
| BstDEI | CTNAG | 2 cut(s) | 114, 393 |
| BstDSI | CCRYGG | 1 cut(s) | 410 |
| BstKTI | GATC | 2 cut(s) | 76, 105 |
| BstMAI | GTCTC | 1 cut(s) | 110 |
| BstMBI | GATC | 2 cut(s) | 73, 102 |
| BstSFI | CTRYAG | 1 cut(s) | 288 |
| BstSLI | GKGCMC | 1 cut(s) | 304 |
| BstSNI | TACGTA | 1 cut(s) | 251 |
| BstV1I | GCAGC | 2 cut(s) | 353, 376 |
| BstV2I | GAAGAC | 1 cut(s) | 459 |
| BsuRI | GGCC | 2 cut(s) | 94, 515 |
| BtgI | CCRYGG | 1 cut(s) | 410 |
| BveI | ACCTGC | 1 cut(s) | 313 |
| Cac8I | GCNNGC | 3 cut(s) | 63, 84, 517 |
| Cfr13I | GGNCC | 1 cut(s) | 370 |
| CseI | GACGC | 1 cut(s) | 347 |
| Csp6I | GTAC | 2 cut(s) | 252, 470 |
| CviAII | CATG | 3 cut(s) | 8, 239, 411 |
| CviJI | RGCY | 8 cut(s) | 86, 94, 99, 246, 344, 415, 515, 519 |
| CviKI_1 | RGCY | 8 cut(s) | 86, 94, 99, 246, 344, 415, 515, 519 |
| CviQI | GTAC | 2 cut(s) | 252, 470 |
| DdeI | CTNAG | 2 cut(s) | 114, 393 |
| DpnI | GATC | 2 cut(s) | 75, 104 |
| DpnII | GATC | 2 cut(s) | 73, 102 |
| EaeI | YGGCCR | 1 cut(s) | 513 |
| Eam1104I | CTCTTC | 1 cut(s) | 153 |
| EarI | CTCTTC | 1 cut(s) | 153 |
| Eco105I | TACGTA | 1 cut(s) | 251 |
| Eco130I | CCWWGG | 2 cut(s) | 410, 473 |
| Eco31I | GGTCTC | 1 cut(s) | 110 |
| Eco32I | GATATC | 1 cut(s) | 136 |
| Eco47I | GGWCC | 1 cut(s) | 370 |
| EcoO109I | RGGNCCY | 1 cut(s) | 370 |
| EcoRV | GATATC | 1 cut(s) | 136 |
| EcoT14I | CCWWGG | 2 cut(s) | 410, 473 |
| ErhI | CCWWGG | 2 cut(s) | 410, 473 |
| FaeI | CATG | 3 cut(s) | 11, 242, 414 |
| FaiI | YATR | 9 cut(s) | 9, 181, 240, 256, 313, 333, 412, 419, 536 |
| FaqI | GGGAC | 1 cut(s) | 383 |
| FatI | CATG | 3 cut(s) | 7, 238, 410 |
| Fnu4HI | GCNGC | 3 cut(s) | 342, 356, 390 |
| Fsp4HI | GCNGC | 3 cut(s) | 342, 356, 390 |
| FspBI | CTAG | 4 cut(s) | 77, 83, 345, 474 |
| GluI | GCNGC | 3 cut(s) | 342, 356, 390 |
| HaeIII | GGCC | 2 cut(s) | 94, 515 |
| HgaI | GACGC | 1 cut(s) | 347 |
| Hin1I | GRCGYC | 1 cut(s) | 358 |
| Hin1II | CATG | 3 cut(s) | 11, 242, 414 |
| HincII | GTYRAC | 1 cut(s) | 46 |
| HindII | GTYRAC | 1 cut(s) | 46 |
| HindIII | AAGCTT | 1 cut(s) | 97 |
| HinfI | GANTC | 2 cut(s) | 143, 555 |
| HpaI | GTTAAC | 1 cut(s) | 46 |
| HphI | GGTGA | 2 cut(s) | 252, 437 |
| Hpy166II | GTNNAC | 3 cut(s) | 46, 302, 470 |
| Hpy188I | TCNGA | 1 cut(s) | 489 |
| Hpy188III | TCNNGA | 1 cut(s) | 191 |
| Hpy8I | GTNNAC | 3 cut(s) | 46, 302, 470 |
| Hpy99I | CGWCG | 1 cut(s) | 363 |
| HpyCH4III | ACNGT | 1 cut(s) | 50 |
| HpyCH4IV | ACGT | 1 cut(s) | 250 |
| HpyCH4V | TGCA | 5 cut(s) | 230, 290, 302, 308, 341 |
| HpyF3I | CTNAG | 2 cut(s) | 114, 393 |
| HpySE526I | ACGT | 1 cut(s) | 250 |
| Hsp92I | GRCGYC | 1 cut(s) | 358 |
| Hsp92II | CATG | 3 cut(s) | 11, 242, 414 |
| KspAI | GTTAAC | 1 cut(s) | 46 |
| Kzo9I | GATC | 2 cut(s) | 73, 102 |
| LpnPI | CCDG | 7 cut(s) | 5, 19, 116, 191, 309, 318, 529 |
| Lsp1109I | GCAGC | 2 cut(s) | 353, 376 |
| LweI | GCATC | 2 cut(s) | 265, 336 |
| MaeI | CTAG | 4 cut(s) | 77, 83, 345, 474 |
| MaeII | ACGT | 1 cut(s) | 250 |
| MaeIII | GTNAC | 1 cut(s) | 401 |
| MalI | GATC | 2 cut(s) | 75, 104 |
| MbiI | CCGCTC | 1 cut(s) | 355 |
| MboI | GATC | 2 cut(s) | 73, 102 |
| MboII | GAAGA | 4 cut(s) | 140, 168, 206, 464 |
| MhlI | GDGCHC | 2 cut(s) | 304, 487 |
| MlsI | TGGCCA | 1 cut(s) | 515 |
| MluCI | AATT | 3 cut(s) | 28, 175, 496 |
| MluNI | TGGCCA | 1 cut(s) | 515 |
| MnlI | CCTC | 4 cut(s) | 84, 198, 383, 388 |
| Mox20I | TGGCCA | 1 cut(s) | 515 |
| MscI | TGGCCA | 1 cut(s) | 515 |
| MseI | TTAA | 2 cut(s) | 45, 443 |
| MslI | CAYNNNNRTG | 1 cut(s) | 273 |
| Msp20I | TGGCCA | 1 cut(s) | 515 |
| MspA1I | CMGCKG | 1 cut(s) | 519 |
| Mva1269I | GAATGC | 1 cut(s) | 232 |
| NcoI | CCATGG | 1 cut(s) | 410 |
| NdeII | GATC | 2 cut(s) | 73, 102 |
| NheI | GCTAGC | 1 cut(s) | 82 |
| NlaIII | CATG | 3 cut(s) | 11, 242, 414 |
| NlaIV | GGNNCC | 1 cut(s) | 371 |
| PaqCI | CACCTGC | 1 cut(s) | 313 |
| PctI | GAATGC | 1 cut(s) | 232 |
| PfeI | GAWTC | 2 cut(s) | 143, 555 |
| PkrI | GCNGC | 3 cut(s) | 343, 357, 391 |
| Ppu21I | YACGTR | 1 cut(s) | 251 |
| PpuMI | RGGWCCY | 1 cut(s) | 370 |
| Psp5II | RGGWCCY | 1 cut(s) | 370 |
| PspN4I | GGNNCC | 1 cut(s) | 371 |
| PspPI | GGNCC | 1 cut(s) | 370 |
| PspPPI | RGGWCCY | 1 cut(s) | 370 |
| PstI | CTGCAG | 1 cut(s) | 292 |
| PvuII | CAGCTG | 1 cut(s) | 519 |
| RsaI | GTAC | 2 cut(s) | 253, 471 |
| RsaNI | GTAC | 2 cut(s) | 252, 470 |
| RseI | CAYNNNNRTG | 1 cut(s) | 273 |
| SaqAI | TTAA | 2 cut(s) | 45, 443 |
| SatI | GCNGC | 3 cut(s) | 342, 356, 390 |
| Sau3AI | GATC | 2 cut(s) | 73, 102 |
| Sau96I | GGNCC | 1 cut(s) | 370 |
| SduI | GDGCHC | 2 cut(s) | 304, 487 |
| SetI | ASST | 9 cut(s) | 101, 253, 307, 346, 375, 408, 427, 475, 521 |
| SfaNI | GCATC | 2 cut(s) | 265, 336 |
| SfcI | CTRYAG | 1 cut(s) | 288 |
| SinI | GGWCC | 1 cut(s) | 370 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 273 |
| SmlI | CTYRAG | 1 cut(s) | 189 |
| SmoI | CTYRAG | 1 cut(s) | 189 |
| SnaBI | TACGTA | 1 cut(s) | 251 |
| Sse9I | AATT | 3 cut(s) | 28, 175, 496 |
| SsiI | CCGC | 1 cut(s) | 355 |
| SspI | AATATT | 1 cut(s) | 16 |
| SspMI | CTAG | 4 cut(s) | 77, 83, 345, 474 |
| StyI | CCWWGG | 2 cut(s) | 410, 473 |
| TaaI | ACNGT | 1 cut(s) | 50 |
| TaiI | ACGT | 1 cut(s) | 253 |
| TaqI | TCGA | 2 cut(s) | 361, 553 |
| TasI | AATT | 3 cut(s) | 28, 175, 496 |
| TauI | GCSGC | 1 cut(s) | 358 |
| TfiI | GAWTC | 2 cut(s) | 143, 555 |
| Tru1I | TTAA | 2 cut(s) | 45, 443 |
| Tru9I | TTAA | 2 cut(s) | 45, 443 |
| TseI | GCWGC | 2 cut(s) | 341, 389 |
| TspDTI | ATGAA | 1 cut(s) | 465 |
| VneI | GTGCAC | 1 cut(s) | 300 |
| VpaK11BI | GGWCC | 1 cut(s) | 370 |
| XapI | RAATTY | 1 cut(s) | 496 |
| XmaJI | CCTAGG | 1 cut(s) | 473 |
| XspI | CTAG | 4 cut(s) | 77, 83, 345, 474 |