ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 871 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1029 |
| AccII | CGCG | 1 cut(s) | 978 |
| AciI | CCGC | 6 cut(s) | 766, 972, 978, 995, 1018, 1071 |
| AclWI | GGATC | 4 cut(s) | 380, 507, 733, 807 |
| AcsI | RAATTY | 1 cut(s) | 595 |
| AcyI | GRCGYC | 1 cut(s) | 463 |
| AfaI | GTAC | 2 cut(s) | 143, 149 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 199, 1029 |
| AgeI | ACCGGT | 1 cut(s) | 220 |
| AgsI | TTSAA | 4 cut(s) | 490, 563, 704, 1060 |
| AhdI | GACNNNNNGTC | 2 cut(s) | 52, 685 |
| AjnI | CCWGG | 1 cut(s) | 670 |
| AluBI | AGCT | 4 cut(s) | 100, 455, 611, 874 |
| AluI | AGCT | 4 cut(s) | 100, 455, 611, 874 |
| Alw26I | GTCTC | 2 cut(s) | 693, 986 |
| AlwI | GGATC | 4 cut(s) | 380, 507, 733, 807 |
| Ama87I | CYCGRG | 1 cut(s) | 987 |
| AoxI | GGCC | 2 cut(s) | 1019, 1053 |
| ApeKI | GCWGC | 3 cut(s) | 290, 403, 992 |
| ApoI | RAATTY | 1 cut(s) | 595 |
| AsiGI | ACCGGT | 1 cut(s) | 220 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 567 |
| AspLEI | GCGC | 3 cut(s) | 543, 978, 1008 |
| AspS9I | GGNCC | 6 cut(s) | 106, 312, 674, 1020, 1033, 1053 |
| AsuHPI | GGTGA | 3 cut(s) | 82, 293, 660 |
| AvaI | CYCGRG | 1 cut(s) | 987 |
| AvaII | GGWCC | 4 cut(s) | 106, 312, 674, 1033 |
| BbsI | GAAGAC | 1 cut(s) | 51 |
| BbvI | GCAGC | 3 cut(s) | 277, 415, 979 |
| BccI | CCATC | 7 cut(s) | 303, 352, 667, 756, 791, 856, 928 |
| BciT130I | CCWGG | 1 cut(s) | 672 |
| BcoDI | GTCTC | 2 cut(s) | 693, 986 |
| BfaI | CTAG | 2 cut(s) | 324, 773 |
| BfoI | RGCGCY | 1 cut(s) | 1009 |
| BfuAI | ACCTGC | 1 cut(s) | 871 |
| BisI | GCNGC | 5 cut(s) | 291, 404, 993, 996, 1019 |
| BlsI | GCNGC | 5 cut(s) | 292, 405, 994, 997, 1020 |
| Bme1390I | CCNGG | 1 cut(s) | 672 |
| Bme18I | GGWCC | 4 cut(s) | 106, 312, 674, 1033 |
| BmeRI | GACNNNNNGTC | 2 cut(s) | 52, 685 |
| BmeT110I | CYCGRG | 1 cut(s) | 987 |
| BmgT120I | GGNCC | 6 cut(s) | 106, 312, 674, 1020, 1033, 1053 |
| BmiI | GGNNCC | 1 cut(s) | 1034 |
| BmrFI | CCNGG | 1 cut(s) | 672 |
| BmsI | GCATC | 4 cut(s) | 261, 349, 664, 759 |
| BoxI | GACNNNNGTC | 1 cut(s) | 851 |
| BpiI | GAAGAC | 1 cut(s) | 51 |
| BpmI | CTGGAG | 1 cut(s) | 401 |
| Bpu10I | CCTNAGC | 1 cut(s) | 242 |
| BsaBI | GATNNNNATC | 1 cut(s) | 36 |
| BsaHI | GRCGYC | 1 cut(s) | 463 |
| BsaI | GGTCTC | 1 cut(s) | 986 |
| BsaJI | CCNNGG | 3 cut(s) | 93, 109, 236 |
| BsaWI | WCCGGW | 1 cut(s) | 220 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 154, 184 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 199, 1029 |
| Bse118I | RCCGGY | 1 cut(s) | 220 |
| Bse1I | ACTGG | 2 cut(s) | 418, 863 |
| Bse8I | GATNNNNATC | 1 cut(s) | 36 |
| BseBI | CCWGG | 1 cut(s) | 672 |
| BseDI | CCNNGG | 3 cut(s) | 93, 109, 236 |
| BseGI | GGATG | 8 cut(s) | 276, 314, 454, 571, 655, 774, 802, 867 |
| BseJI | GATNNNNATC | 1 cut(s) | 36 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 199, 1029 |
| BseMII | CTCAG | 4 cut(s) | 80, 256, 720, 757 |
| BseNI | ACTGG | 2 cut(s) | 418, 863 |
| BseXI | GCAGC | 3 cut(s) | 277, 415, 979 |
| BseYI | CCCAGC | 1 cut(s) | 1050 |
| Bsh1236I | CGCG | 1 cut(s) | 978 |
| Bsh1285I | CGRYCG | 1 cut(s) | 820 |
| BshFI | GGCC | 2 cut(s) | 1021, 1055 |
| BshTI | ACCGGT | 1 cut(s) | 220 |
| BsiEI | CGRYCG | 1 cut(s) | 820 |
| BsiHKCI | CYCGRG | 1 cut(s) | 987 |
| BsiSI | CCGG | 1 cut(s) | 221 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 199, 1029 |
| BsmAI | GTCTC | 2 cut(s) | 693, 986 |
| BsnI | GGCC | 2 cut(s) | 1021, 1055 |
| Bso31I | GGTCTC | 1 cut(s) | 986 |
| BsoBI | CYCGRG | 1 cut(s) | 987 |
| Bsp143I | GATC | 8 cut(s) | 184, 385, 499, 725, 778, 812, 817, 888 |
| BspACI | CCGC | 6 cut(s) | 766, 972, 978, 995, 1018, 1071 |
| BspANI | GGCC | 2 cut(s) | 1021, 1055 |
| BspCNI | CTCAG | 4 cut(s) | 79, 255, 721, 756 |
| BspFNI | CGCG | 1 cut(s) | 978 |
| BspLI | GGNNCC | 1 cut(s) | 1034 |
| BspMI | ACCTGC | 1 cut(s) | 871 |
| BspPI | GGATC | 4 cut(s) | 380, 507, 733, 807 |
| BspQI | GCTCTTC | 1 cut(s) | 864 |
| BspTNI | GGTCTC | 1 cut(s) | 986 |
| BsrFI | RCCGGY | 1 cut(s) | 220 |
| BsrI | ACTGG | 2 cut(s) | 418, 863 |
| BssAI | RCCGGY | 1 cut(s) | 220 |
| BssECI | CCNNGG | 3 cut(s) | 93, 109, 236 |
| BssMI | GATC | 8 cut(s) | 184, 385, 499, 725, 778, 812, 817, 888 |
| BssNI | GRCGYC | 1 cut(s) | 463 |
| BssT1I | CCWWGG | 2 cut(s) | 93, 236 |
| Bst2UI | CCWGG | 1 cut(s) | 672 |
| Bst4CI | ACNGT | 4 cut(s) | 110, 683, 927, 1064 |
| Bst6I | CTCTTC | 1 cut(s) | 864 |
| BstACI | GRCGYC | 1 cut(s) | 463 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 346 |
| BstC8I | GCNNGC | 3 cut(s) | 122, 135, 974 |
| BstDEI | CTNAG | 5 cut(s) | 66, 242, 354, 729, 743 |
| BstDSI | CCRYGG | 1 cut(s) | 109 |
| BstF5I | GGATG | 8 cut(s) | 276, 314, 454, 571, 655, 774, 802, 867 |
| BstFNI | CGCG | 1 cut(s) | 978 |
| BstH2I | RGCGCY | 1 cut(s) | 1009 |
| BstHHI | GCGC | 3 cut(s) | 543, 978, 1008 |
| BstKTI | GATC | 8 cut(s) | 187, 388, 502, 728, 781, 815, 820, 891 |
| BstMAI | GTCTC | 2 cut(s) | 693, 986 |
| BstMBI | GATC | 8 cut(s) | 184, 385, 499, 725, 778, 812, 817, 888 |
| BstMCI | CGRYCG | 1 cut(s) | 820 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 130, 346 |
| BstNI | CCWGG | 1 cut(s) | 672 |
| BstNSI | RCATGY | 1 cut(s) | 137 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 851 |
| BstSCI | CCNGG | 1 cut(s) | 670 |
| BstUI | CGCG | 1 cut(s) | 978 |
| BstV1I | GCAGC | 3 cut(s) | 277, 415, 979 |
| BstV2I | GAAGAC | 1 cut(s) | 51 |
| BstX2I | RGATCY | 2 cut(s) | 725, 812 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 202 |
| BstYI | RGATCY | 2 cut(s) | 725, 812 |
| BsuRI | GGCC | 2 cut(s) | 1021, 1055 |
| BtgI | CCRYGG | 1 cut(s) | 109 |
| BtsCI | GGATG | 8 cut(s) | 276, 314, 454, 571, 655, 774, 802, 867 |
| BtsI | GCAGTG | 2 cut(s) | 558, 1023 |
| BtsIMutI | CAGTG | 2 cut(s) | 558, 1023 |
| BveI | ACCTGC | 1 cut(s) | 871 |
| Cac8I | GCNNGC | 3 cut(s) | 122, 135, 974 |
| CfoI | GCGC | 3 cut(s) | 543, 978, 1008 |
| Cfr10I | RCCGGY | 1 cut(s) | 220 |
| Cfr13I | GGNCC | 6 cut(s) | 106, 312, 674, 1020, 1033, 1053 |
| CseI | GACGC | 2 cut(s) | 452, 954 |
| Csp6I | GTAC | 2 cut(s) | 142, 148 |
| CspAI | ACCGGT | 1 cut(s) | 220 |
| CviAII | CATG | 7 cut(s) | 9, 49, 75, 134, 278, 576, 826 |
| CviQI | GTAC | 2 cut(s) | 142, 148 |
| DdeI | CTNAG | 5 cut(s) | 66, 242, 354, 729, 743 |
| DpnI | GATC | 8 cut(s) | 186, 387, 501, 727, 780, 814, 819, 890 |
| DpnII | GATC | 8 cut(s) | 184, 385, 499, 725, 778, 812, 817, 888 |
| DriI | GACNNNNNGTC | 2 cut(s) | 52, 685 |
| Eam1104I | CTCTTC | 1 cut(s) | 864 |
| Eam1105I | GACNNNNNGTC | 2 cut(s) | 52, 685 |
| EarI | CTCTTC | 1 cut(s) | 864 |
| EciI | GGCGGA | 1 cut(s) | 781 |
| Eco130I | CCWWGG | 2 cut(s) | 93, 236 |
| Eco31I | GGTCTC | 1 cut(s) | 986 |
| Eco47I | GGWCC | 4 cut(s) | 106, 312, 674, 1033 |
| Eco88I | CYCGRG | 1 cut(s) | 987 |
| EcoRI | GAATTC | 1 cut(s) | 595 |
| EcoRII | CCWGG | 1 cut(s) | 670 |
| EcoT14I | CCWWGG | 2 cut(s) | 93, 236 |
| EcoT22I | ATGCAT | 2 cut(s) | 342, 657 |
| ErhI | CCWWGG | 2 cut(s) | 93, 236 |
| FaeI | CATG | 7 cut(s) | 12, 52, 78, 137, 281, 579, 829 |
| FatI | CATG | 7 cut(s) | 8, 48, 74, 133, 277, 575, 825 |
| FauI | CCCGC | 1 cut(s) | 965 |
| FauNDI | CATATG | 3 cut(s) | 336, 622, 651 |
| Fnu4HI | GCNGC | 5 cut(s) | 291, 404, 993, 996, 1019 |
| FokI | GGATG | 8 cut(s) | 283, 321, 461, 558, 642, 781, 809, 874 |
| Fsp4HI | GCNGC | 5 cut(s) | 291, 404, 993, 996, 1019 |
| FspBI | CTAG | 2 cut(s) | 324, 773 |
| GlaI | GCGC | 3 cut(s) | 542, 977, 1007 |
| GluI | GCNGC | 5 cut(s) | 291, 404, 993, 996, 1019 |
| GsaI | CCCAGC | 1 cut(s) | 1054 |
| GsuI | CTGGAG | 1 cut(s) | 401 |
| HaeII | RGCGCY | 1 cut(s) | 1009 |
| HaeIII | GGCC | 2 cut(s) | 1021, 1055 |
| HapII | CCGG | 1 cut(s) | 221 |
| HgaI | GACGC | 2 cut(s) | 452, 954 |
| HhaI | GCGC | 3 cut(s) | 543, 978, 1008 |
| Hin1I | GRCGYC | 1 cut(s) | 463 |
| Hin1II | CATG | 7 cut(s) | 12, 52, 78, 137, 281, 579, 829 |
| Hin6I | GCGC | 3 cut(s) | 541, 976, 1006 |
| HinP1I | GCGC | 3 cut(s) | 541, 976, 1006 |
| HincII | GTYRAC | 1 cut(s) | 856 |
| HindII | GTYRAC | 1 cut(s) | 856 |
| HinfI | GANTC | 2 cut(s) | 822, 1000 |
| HpaII | CCGG | 1 cut(s) | 221 |
| HphI | GGTGA | 3 cut(s) | 82, 293, 660 |
| Hpy166II | GTNNAC | 3 cut(s) | 72, 90, 856 |
| Hpy188I | TCNGA | 7 cut(s) | 184, 725, 730, 817, 910, 964, 1037 |
| Hpy188III | TCNNGA | 5 cut(s) | 41, 324, 560, 634, 810 |
| Hpy8I | GTNNAC | 3 cut(s) | 72, 90, 856 |
| HpyAV | CCTTC | 3 cut(s) | 488, 631, 1066 |
| HpyCH4III | ACNGT | 4 cut(s) | 110, 683, 927, 1064 |
| HpyCH4V | TGCA | 8 cut(s) | 120, 218, 274, 340, 349, 655, 880, 931 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 130, 346 |
| HpyF3I | CTNAG | 5 cut(s) | 66, 242, 354, 729, 743 |
| Hsp92I | GRCGYC | 1 cut(s) | 463 |
| Hsp92II | CATG | 7 cut(s) | 12, 52, 78, 137, 281, 579, 829 |
| HspAI | GCGC | 3 cut(s) | 541, 976, 1006 |
| Kzo9I | GATC | 8 cut(s) | 184, 385, 499, 725, 778, 812, 817, 888 |
| LguI | GCTCTTC | 1 cut(s) | 864 |
| LmnI | GCTCC | 2 cut(s) | 97, 616 |
| Lsp1109I | GCAGC | 3 cut(s) | 277, 415, 979 |
| LweI | GCATC | 4 cut(s) | 261, 349, 664, 759 |
| MaeI | CTAG | 2 cut(s) | 324, 773 |
| MalI | GATC | 8 cut(s) | 186, 387, 501, 727, 780, 814, 819, 890 |
| MboI | GATC | 8 cut(s) | 184, 385, 499, 725, 778, 812, 817, 888 |
| MboII | GAAGA | 5 cut(s) | 56, 591, 731, 771, 881 |
| MflI | RGATCY | 2 cut(s) | 725, 812 |
| MluCI | AATT | 3 cut(s) | 82, 595, 1043 |
| MlyI | GAGTC | 1 cut(s) | 831 |
| MmeI | TCCRAC | 2 cut(s) | 703, 733 |
| MnlI | CCTC | 8 cut(s) | 34, 180, 331, 619, 706, 712, 724, 947 |
| Mph1103I | ATGCAT | 2 cut(s) | 342, 657 |
| MroXI | GAANNNNTTC | 1 cut(s) | 567 |
| MseI | TTAA | 1 cut(s) | 81 |
| MslI | CAYNNNNRTG | 1 cut(s) | 200 |
| MspI | CCGG | 1 cut(s) | 221 |
| MspR9I | CCNGG | 1 cut(s) | 672 |
| MvaI | CCWGG | 1 cut(s) | 672 |
| MvnI | CGCG | 1 cut(s) | 978 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 130, 346 |
| NdeI | CATATG | 3 cut(s) | 336, 622, 651 |
| NdeII | GATC | 8 cut(s) | 184, 385, 499, 725, 778, 812, 817, 888 |
| NlaIII | CATG | 7 cut(s) | 12, 52, 78, 137, 281, 579, 829 |
| NlaIV | GGNNCC | 1 cut(s) | 1034 |
| NsiI | ATGCAT | 2 cut(s) | 342, 657 |
| NspI | RCATGY | 1 cut(s) | 137 |
| PaeI | GCATGC | 1 cut(s) | 137 |
| PciSI | GCTCTTC | 1 cut(s) | 864 |
| PdmI | GAANNNNTTC | 1 cut(s) | 567 |
| PfeI | GAWTC | 1 cut(s) | 1000 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1029 |
| PinAI | ACCGGT | 1 cut(s) | 220 |
| PkrI | GCNGC | 5 cut(s) | 292, 405, 994, 997, 1020 |
| Ple19I | CGATCG | 1 cut(s) | 820 |
| PleI | GAGTC | 1 cut(s) | 830 |
| PpsI | GAGTC | 1 cut(s) | 830 |
| PshAI | GACNNNNGTC | 1 cut(s) | 851 |
| Psp6I | CCWGG | 1 cut(s) | 670 |
| PspFI | CCCAGC | 1 cut(s) | 1050 |
| PspGI | CCWGG | 1 cut(s) | 670 |
| PspN4I | GGNNCC | 1 cut(s) | 1034 |
| PspPI | GGNCC | 6 cut(s) | 106, 312, 674, 1020, 1033, 1053 |
| PsuI | RGATCY | 2 cut(s) | 725, 812 |
| PvuI | CGATCG | 1 cut(s) | 820 |
| RsaI | GTAC | 2 cut(s) | 143, 149 |
| RsaNI | GTAC | 2 cut(s) | 142, 148 |
| RseI | CAYNNNNRTG | 1 cut(s) | 200 |
| SapI | GCTCTTC | 1 cut(s) | 864 |
| SaqAI | TTAA | 1 cut(s) | 81 |
| SatI | GCNGC | 5 cut(s) | 291, 404, 993, 996, 1019 |
| Sau3AI | GATC | 8 cut(s) | 184, 385, 499, 725, 778, 812, 817, 888 |
| Sau96I | GGNCC | 6 cut(s) | 106, 312, 674, 1020, 1033, 1053 |
| SchI | GAGTC | 1 cut(s) | 831 |
| ScrFI | CCNGG | 1 cut(s) | 672 |
| SfaNI | GCATC | 4 cut(s) | 261, 349, 664, 759 |
| SinI | GGWCC | 4 cut(s) | 106, 312, 674, 1033 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 200 |
| SphI | GCATGC | 1 cut(s) | 137 |
| Sse9I | AATT | 3 cut(s) | 82, 595, 1043 |
| SsiI | CCGC | 6 cut(s) | 766, 972, 978, 995, 1018, 1071 |
| SspMI | CTAG | 2 cut(s) | 324, 773 |
| StyD4I | CCNGG | 1 cut(s) | 670 |
| StyI | CCWWGG | 2 cut(s) | 93, 236 |
| TaaI | ACNGT | 4 cut(s) | 110, 683, 927, 1064 |
| TaqI | TCGA | 3 cut(s) | 26, 820, 887 |
| TasI | AATT | 3 cut(s) | 82, 595, 1043 |
| TauI | GCSGC | 2 cut(s) | 998, 1021 |
| TfiI | GAWTC | 1 cut(s) | 1000 |
| Tru1I | TTAA | 1 cut(s) | 81 |
| Tru9I | TTAA | 1 cut(s) | 81 |
| TscAI | CASTG | 2 cut(s) | 558, 1030 |
| TseI | GCWGC | 3 cut(s) | 290, 403, 992 |
| TspDTI | ATGAA | 6 cut(s) | 383, 386, 447, 465, 560, 609 |
| TspRI | CASTG | 2 cut(s) | 558, 1030 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1029 |
| VpaK11BI | GGWCC | 4 cut(s) | 106, 312, 674, 1033 |
| XapI | RAATTY | 1 cut(s) | 595 |
| XbaI | TCTAGA | 1 cut(s) | 323 |
| XceI | RCATGY | 1 cut(s) | 137 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 100 |
| XmnI | GAANNNNTTC | 1 cut(s) | 567 |
| XspI | CTAG | 2 cut(s) | 324, 773 |
| Zsp2I | ATGCAT | 2 cut(s) | 342, 657 |