ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 2 cut(s) | 32, 587 |
| AcoI | YGGCCR | 1 cut(s) | 520 |
| AcsI | RAATTY | 2 cut(s) | 307, 318 |
| AfaI | GTAC | 2 cut(s) | 70, 439 |
| AgsI | TTSAA | 3 cut(s) | 317, 557, 650 |
| AluBI | AGCT | 2 cut(s) | 547, 628 |
| AluI | AGCT | 2 cut(s) | 547, 628 |
| Alw21I | GWGCWC | 1 cut(s) | 355 |
| Alw44I | GTGCAC | 1 cut(s) | 351 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 284 |
| AoxI | GGCC | 3 cut(s) | 287, 428, 520 |
| ApaLI | GTGCAC | 1 cut(s) | 351 |
| ApeKI | GCWGC | 2 cut(s) | 406, 497 |
| ApoI | RAATTY | 2 cut(s) | 307, 318 |
| AseI | ATTAAT | 1 cut(s) | 486 |
| AspS9I | GGNCC | 2 cut(s) | 287, 428 |
| AsuHPI | GGTGA | 1 cut(s) | 151 |
| AxyI | CCTNAGG | 1 cut(s) | 360 |
| BaeGI | GKGCMC | 2 cut(s) | 162, 355 |
| BalI | TGGCCA | 1 cut(s) | 522 |
| Bbv12I | GWGCWC | 1 cut(s) | 355 |
| BbvCI | CCTCAGC | 1 cut(s) | 629 |
| BbvI | GCAGC | 2 cut(s) | 393, 484 |
| BceAI | ACGGC | 1 cut(s) | 415 |
| BfaI | CTAG | 1 cut(s) | 676 |
| BfmI | CTRYAG | 1 cut(s) | 407 |
| BisI | GCNGC | 2 cut(s) | 407, 498 |
| BlpI | GCTNAGC | 1 cut(s) | 624 |
| BlsI | GCNGC | 2 cut(s) | 408, 499 |
| BmgT120I | GGNCC | 2 cut(s) | 287, 428 |
| BmiI | GGNNCC | 1 cut(s) | 429 |
| BmrI | ACTGGG | 2 cut(s) | 216, 294 |
| BmsI | GCATC | 2 cut(s) | 271, 316 |
| BmuI | ACTGGG | 2 cut(s) | 216, 294 |
| Bpu10I | CCTNAGC | 1 cut(s) | 629 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 624 |
| BsaJI | CCNNGG | 1 cut(s) | 290 |
| Bse1I | ACTGG | 2 cut(s) | 211, 289 |
| Bse21I | CCTNAGG | 1 cut(s) | 360 |
| BseDI | CCNNGG | 1 cut(s) | 290 |
| BseGI | GGATG | 1 cut(s) | 331 |
| BseMII | CTCAG | 4 cut(s) | 291, 351, 615, 620 |
| BseNI | ACTGG | 2 cut(s) | 211, 289 |
| BseRI | GAGGAG | 1 cut(s) | 668 |
| BseSI | GKGCMC | 2 cut(s) | 162, 355 |
| BseXI | GCAGC | 2 cut(s) | 393, 484 |
| BshFI | GGCC | 3 cut(s) | 289, 430, 522 |
| BsiHKAI | GWGCWC | 1 cut(s) | 355 |
| BsnI | GGCC | 3 cut(s) | 289, 430, 522 |
| Bsp1286I | GDGCHC | 2 cut(s) | 162, 355 |
| Bsp1407I | TGTACA | 1 cut(s) | 68 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 624 |
| Bsp19I | CCATGG | 1 cut(s) | 290 |
| BspACI | CCGC | 2 cut(s) | 32, 587 |
| BspANI | GGCC | 3 cut(s) | 289, 430, 522 |
| BspCNI | CTCAG | 4 cut(s) | 290, 352, 616, 621 |
| BspLI | GGNNCC | 1 cut(s) | 429 |
| BspMAI | CTGCAG | 1 cut(s) | 411 |
| BsrGI | TGTACA | 1 cut(s) | 68 |
| BsrI | ACTGG | 2 cut(s) | 211, 289 |
| BssECI | CCNNGG | 1 cut(s) | 290 |
| BssT1I | CCWWGG | 1 cut(s) | 290 |
| Bst4CI | ACNGT | 2 cut(s) | 73, 581 |
| Bst6I | CTCTTC | 1 cut(s) | 645 |
| BstAUI | TGTACA | 1 cut(s) | 68 |
| BstDEI | CTNAG | 5 cut(s) | 9, 277, 360, 624, 629 |
| BstDSI | CCRYGG | 1 cut(s) | 290 |
| BstF5I | GGATG | 1 cut(s) | 331 |
| BstNSI | RCATGY | 1 cut(s) | 497 |
| BstSFI | CTRYAG | 1 cut(s) | 407 |
| BstSLI | GKGCMC | 2 cut(s) | 162, 355 |
| BstV1I | GCAGC | 2 cut(s) | 393, 484 |
| Bsu36I | CCTNAGG | 1 cut(s) | 360 |
| BsuRI | GGCC | 3 cut(s) | 289, 430, 522 |
| BtgI | CCRYGG | 1 cut(s) | 290 |
| BtsCI | GGATG | 1 cut(s) | 331 |
| CaiI | CAGNNNCTG | 1 cut(s) | 284 |
| Cfr13I | GGNCC | 2 cut(s) | 287, 428 |
| Csp6I | GTAC | 2 cut(s) | 69, 438 |
| CviAII | CATG | 2 cut(s) | 291, 494 |
| CviQI | GTAC | 2 cut(s) | 69, 438 |
| DdeI | CTNAG | 5 cut(s) | 9, 277, 360, 624, 629 |
| EaeI | YGGCCR | 1 cut(s) | 520 |
| Eam1104I | CTCTTC | 1 cut(s) | 645 |
| EarI | CTCTTC | 1 cut(s) | 645 |
| EciI | GGCGGA | 1 cut(s) | 47 |
| Eco130I | CCWWGG | 1 cut(s) | 290 |
| Eco32I | GATATC | 1 cut(s) | 37 |
| Eco81I | CCTNAGG | 1 cut(s) | 360 |
| EcoRV | GATATC | 1 cut(s) | 37 |
| EcoT14I | CCWWGG | 1 cut(s) | 290 |
| ErhI | CCWWGG | 1 cut(s) | 290 |
| FaeI | CATG | 2 cut(s) | 294, 497 |
| FaiI | YATR | 9 cut(s) | 216, 292, 333, 495, 525, 620, 639, 641, 661 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 374, 406 |
| FatI | CATG | 2 cut(s) | 290, 493 |
| Fnu4HI | GCNGC | 2 cut(s) | 407, 498 |
| FokI | GGATG | 1 cut(s) | 338 |
| Fsp4HI | GCNGC | 2 cut(s) | 407, 498 |
| FspBI | CTAG | 1 cut(s) | 676 |
| GluI | GCNGC | 2 cut(s) | 407, 498 |
| HaeIII | GGCC | 3 cut(s) | 289, 430, 522 |
| Hin1II | CATG | 2 cut(s) | 294, 497 |
| HinfI | GANTC | 1 cut(s) | 550 |
| HphI | GGTGA | 1 cut(s) | 151 |
| Hpy166II | GTNNAC | 2 cut(s) | 353, 438 |
| Hpy188I | TCNGA | 1 cut(s) | 59 |
| Hpy188III | TCNNGA | 3 cut(s) | 224, 323, 554 |
| Hpy8I | GTNNAC | 2 cut(s) | 353, 438 |
| HpyAV | CCTTC | 3 cut(s) | 73, 179, 334 |
| HpyCH4III | ACNGT | 2 cut(s) | 73, 581 |
| HpyCH4IV | ACGT | 1 cut(s) | 52 |
| HpyCH4V | TGCA | 3 cut(s) | 262, 353, 409 |
| HpyF3I | CTNAG | 5 cut(s) | 9, 277, 360, 624, 629 |
| HpySE526I | ACGT | 1 cut(s) | 52 |
| Hsp92II | CATG | 2 cut(s) | 294, 497 |
| LmnI | GCTCC | 1 cut(s) | 191 |
| LpnPI | CCDG | 7 cut(s) | 89, 192, 237, 270, 372, 395, 455 |
| Lsp1109I | GCAGC | 2 cut(s) | 393, 484 |
| LweI | GCATC | 2 cut(s) | 271, 316 |
| MaeI | CTAG | 1 cut(s) | 676 |
| MaeII | ACGT | 1 cut(s) | 52 |
| MaeIII | GTNAC | 2 cut(s) | 202, 280 |
| MboII | GAAGA | 3 cut(s) | 25, 349, 662 |
| MhlI | GDGCHC | 2 cut(s) | 162, 355 |
| MlsI | TGGCCA | 1 cut(s) | 522 |
| MluCI | AATT | 9 cut(s) | 195, 254, 267, 307, 318, 483, 516, 531, 557 |
| MluNI | TGGCCA | 1 cut(s) | 522 |
| Mox20I | TGGCCA | 1 cut(s) | 522 |
| MscI | TGGCCA | 1 cut(s) | 522 |
| MseI | TTAA | 6 cut(s) | 381, 486, 515, 534, 540, 560 |
| Msp20I | TGGCCA | 1 cut(s) | 522 |
| MspA1I | CMGCKG | 1 cut(s) | 547 |
| NcoI | CCATGG | 1 cut(s) | 290 |
| NlaIII | CATG | 2 cut(s) | 294, 497 |
| NlaIV | GGNNCC | 1 cut(s) | 429 |
| NspI | RCATGY | 1 cut(s) | 497 |
| PfeI | GAWTC | 1 cut(s) | 550 |
| PkrI | GCNGC | 2 cut(s) | 408, 499 |
| PshBI | ATTAAT | 1 cut(s) | 486 |
| PspN4I | GGNNCC | 1 cut(s) | 429 |
| PspPI | GGNCC | 2 cut(s) | 287, 428 |
| PstI | CTGCAG | 1 cut(s) | 411 |
| PstNI | CAGNNNCTG | 1 cut(s) | 284 |
| PvuII | CAGCTG | 1 cut(s) | 547 |
| RsaI | GTAC | 2 cut(s) | 70, 439 |
| RsaNI | GTAC | 2 cut(s) | 69, 438 |
| SaqAI | TTAA | 6 cut(s) | 381, 486, 515, 534, 540, 560 |
| SatI | GCNGC | 2 cut(s) | 407, 498 |
| Sau96I | GGNCC | 2 cut(s) | 287, 428 |
| SduI | GDGCHC | 2 cut(s) | 162, 355 |
| SetI | ASST | 9 cut(s) | 55, 64, 84, 349, 361, 390, 549, 597, 630 |
| SfaNI | GCATC | 2 cut(s) | 271, 316 |
| SfcI | CTRYAG | 1 cut(s) | 407 |
| Sse9I | AATT | 9 cut(s) | 195, 254, 267, 307, 318, 483, 516, 531, 557 |
| SsiI | CCGC | 2 cut(s) | 32, 587 |
| SspMI | CTAG | 1 cut(s) | 676 |
| StyI | CCWWGG | 1 cut(s) | 290 |
| TaaI | ACNGT | 2 cut(s) | 73, 581 |
| TaiI | ACGT | 1 cut(s) | 55 |
| TaqI | TCGA | 4 cut(s) | 115, 265, 576, 613 |
| TasI | AATT | 9 cut(s) | 195, 254, 267, 307, 318, 483, 516, 531, 557 |
| TatI | WGTACW | 2 cut(s) | 68, 437 |
| TfiI | GAWTC | 1 cut(s) | 550 |
| Tru1I | TTAA | 6 cut(s) | 381, 486, 515, 534, 540, 560 |
| Tru9I | TTAA | 6 cut(s) | 381, 486, 515, 534, 540, 560 |
| TseI | GCWGC | 2 cut(s) | 406, 497 |
| TspDTI | ATGAA | 2 cut(s) | 39, 301 |
| VneI | GTGCAC | 1 cut(s) | 351 |
| VspI | ATTAAT | 1 cut(s) | 486 |
| XapI | RAATTY | 2 cut(s) | 307, 318 |
| XceI | RCATGY | 1 cut(s) | 497 |
| XspI | CTAG | 1 cut(s) | 676 |