ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Aa_trans | PF01490 | 51 - 460 | 7.4e-65 | Transmembrane amino acid transporter protein |
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 3 cut(s) | 13, 128, 979 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1196 |
| AccI | GTMKAC | 1 cut(s) | 217 |
| AciI | CCGC | 2 cut(s) | 252, 1032 |
| AclWI | GGATC | 4 cut(s) | 163, 613, 746, 1120 |
| AcsI | RAATTY | 3 cut(s) | 673, 795, 1106 |
| AcuI | CTGAAG | 3 cut(s) | 343, 865, 945 |
| AfaI | GTAC | 4 cut(s) | 224, 299, 457, 1071 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 395, 824, 1196 |
| AgsI | TTSAA | 6 cut(s) | 192, 681, 709, 838, 1270, 1315 |
| AjnI | CCWGG | 1 cut(s) | 1386 |
| AluBI | AGCT | 2 cut(s) | 1115, 1370 |
| AluI | AGCT | 2 cut(s) | 1115, 1370 |
| Alw21I | GWGCWC | 2 cut(s) | 168, 321 |
| Alw26I | GTCTC | 3 cut(s) | 357, 616, 1194 |
| Alw44I | GTGCAC | 1 cut(s) | 164 |
| AlwI | GGATC | 4 cut(s) | 163, 613, 746, 1120 |
| Ama87I | CYCGRG | 1 cut(s) | 320 |
| AoxI | GGCC | 3 cut(s) | 413, 686, 928 |
| ApaLI | GTGCAC | 1 cut(s) | 164 |
| ApeKI | GCWGC | 7 cut(s) | 29, 653, 812, 1054, 1178, 1358, 1367 |
| ApoI | RAATTY | 3 cut(s) | 673, 795, 1106 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 676, 989, 1010 |
| AspS9I | GGNCC | 4 cut(s) | 386, 413, 686, 970 |
| AsuHPI | GGTGA | 3 cut(s) | 280, 1006, 1147 |
| AvaI | CYCGRG | 1 cut(s) | 320 |
| AvaII | GGWCC | 2 cut(s) | 386, 970 |
| BaeGI | GKGCMC | 1 cut(s) | 168 |
| BanI | GGYRCC | 3 cut(s) | 13, 128, 979 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 473, 505 |
| BauI | CACGAG | 1 cut(s) | 372 |
| BbsI | GAAGAC | 1 cut(s) | 1255 |
| Bbv12I | GWGCWC | 2 cut(s) | 168, 321 |
| BbvI | GCAGC | 7 cut(s) | 41, 640, 824, 1066, 1190, 1370, 1379 |
| BccI | CCATC | 6 cut(s) | 62, 237, 586, 764, 950, 1294 |
| BceAI | ACGGC | 1 cut(s) | 790 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 311, 345 |
| BciT130I | CCWGG | 1 cut(s) | 1388 |
| BclI | TGATCA | 1 cut(s) | 537 |
| BcoDI | GTCTC | 3 cut(s) | 357, 616, 1194 |
| BfaI | CTAG | 2 cut(s) | 629, 1073 |
| BfmI | CTRYAG | 2 cut(s) | 634, 1052 |
| BisI | GCNGC | 7 cut(s) | 30, 654, 813, 1055, 1179, 1359, 1368 |
| BlsI | GCNGC | 7 cut(s) | 31, 655, 814, 1056, 1180, 1360, 1369 |
| BmcAI | AGTACT | 1 cut(s) | 1071 |
| Bme1390I | CCNGG | 1 cut(s) | 1388 |
| Bme18I | GGWCC | 2 cut(s) | 386, 970 |
| BmeT110I | CYCGRG | 1 cut(s) | 320 |
| BmgT120I | GGNCC | 4 cut(s) | 386, 413, 686, 970 |
| BmiI | GGNNCC | 5 cut(s) | 15, 130, 388, 972, 981 |
| BmrFI | CCNGG | 1 cut(s) | 1388 |
| BmsI | GCATC | 4 cut(s) | 112, 539, 669, 1381 |
| BpiI | GAAGAC | 1 cut(s) | 1255 |
| Bpu10I | CCTNAGC | 1 cut(s) | 938 |
| BsaBI | GATNNNNATC | 2 cut(s) | 48, 72 |
| BsaJI | CCNNGG | 4 cut(s) | 81, 238, 693, 1130 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 267, 297, 596, 626 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 395, 824, 1196 |
| Bse118I | RCCGGY | 1 cut(s) | 125 |
| Bse1I | ACTGG | 3 cut(s) | 123, 818, 1395 |
| Bse3DI | GCAATG | 5 cut(s) | 479, 759, 784, 1188, 1323 |
| Bse8I | GATNNNNATC | 2 cut(s) | 48, 72 |
| BseBI | CCWGG | 1 cut(s) | 1388 |
| BseDI | CCNNGG | 4 cut(s) | 81, 238, 693, 1130 |
| BseGI | GGATG | 5 cut(s) | 127, 248, 554, 933, 1396 |
| BseJI | GATNNNNATC | 2 cut(s) | 48, 72 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 395, 824, 1196 |
| BseMI | GCAATG | 5 cut(s) | 479, 759, 784, 1188, 1323 |
| BseNI | ACTGG | 3 cut(s) | 123, 818, 1395 |
| BseSI | GKGCMC | 1 cut(s) | 168 |
| BseXI | GCAGC | 7 cut(s) | 41, 640, 824, 1066, 1190, 1370, 1379 |
| Bsh1285I | CGRYCG | 1 cut(s) | 46 |
| BshFI | GGCC | 3 cut(s) | 415, 688, 930 |
| BshNI | GGYRCC | 3 cut(s) | 13, 128, 979 |
| BsiEI | CGRYCG | 1 cut(s) | 46 |
| BsiHKAI | GWGCWC | 2 cut(s) | 168, 321 |
| BsiHKCI | CYCGRG | 1 cut(s) | 320 |
| BsiSI | CCGG | 1 cut(s) | 126 |
| BsiWI | CGTACG | 1 cut(s) | 222 |
| BslFI | GGGAC | 1 cut(s) | 19 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 395, 824, 1196 |
| BsmAI | GTCTC | 3 cut(s) | 357, 616, 1194 |
| BsmFI | GGGAC | 1 cut(s) | 19 |
| BsnI | GGCC | 3 cut(s) | 415, 688, 930 |
| BsoBI | CYCGRG | 1 cut(s) | 320 |
| Bsp1286I | GDGCHC | 2 cut(s) | 168, 321 |
| Bsp143I | GATC | 9 cut(s) | 43, 55, 155, 270, 537, 618, 738, 1125, 1137 |
| BspACI | CCGC | 2 cut(s) | 252, 1032 |
| BspANI | GGCC | 3 cut(s) | 415, 688, 930 |
| BspHI | TCATGA | 1 cut(s) | 999 |
| BspLI | GGNNCC | 5 cut(s) | 15, 130, 388, 972, 981 |
| BspMAI | CTGCAG | 1 cut(s) | 1056 |
| BspPI | GGATC | 4 cut(s) | 163, 613, 746, 1120 |
| BspT107I | GGYRCC | 3 cut(s) | 13, 128, 979 |
| BsrDI | GCAATG | 5 cut(s) | 479, 759, 784, 1188, 1323 |
| BsrFI | RCCGGY | 1 cut(s) | 125 |
| BsrI | ACTGG | 3 cut(s) | 123, 818, 1395 |
| BssAI | RCCGGY | 1 cut(s) | 125 |
| BssECI | CCNNGG | 4 cut(s) | 81, 238, 693, 1130 |
| BssMI | GATC | 9 cut(s) | 43, 55, 155, 270, 537, 618, 738, 1125, 1137 |
| BssSI | CACGAG | 1 cut(s) | 372 |
| BssT1I | CCWWGG | 3 cut(s) | 81, 693, 1130 |
| Bst2BI | CACGAG | 1 cut(s) | 372 |
| Bst2UI | CCWGG | 1 cut(s) | 1388 |
| Bst4CI | ACNGT | 4 cut(s) | 170, 222, 525, 1174 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1364 |
| BstC8I | GCNNGC | 1 cut(s) | 658 |
| BstDEI | CTNAG | 3 cut(s) | 212, 593, 938 |
| BstEII | GGTNACC | 1 cut(s) | 914 |
| BstF5I | GGATG | 5 cut(s) | 127, 248, 554, 933, 1396 |
| BstKTI | GATC | 9 cut(s) | 46, 58, 158, 273, 540, 621, 741, 1128, 1140 |
| BstMAI | GTCTC | 3 cut(s) | 357, 616, 1194 |
| BstMBI | GATC | 9 cut(s) | 43, 55, 155, 270, 537, 618, 738, 1125, 1137 |
| BstMCI | CGRYCG | 1 cut(s) | 46 |
| BstMWI | GCNNNNNNNGC | 8 cut(s) | 35, 354, 449, 653, 761, 809, 1364, 1367 |
| BstNI | CCWGG | 1 cut(s) | 1388 |
| BstNSI | RCATGY | 1 cut(s) | 496 |
| BstPI | GGTNACC | 1 cut(s) | 914 |
| BstSCI | CCNGG | 1 cut(s) | 1386 |
| BstSFI | CTRYAG | 2 cut(s) | 634, 1052 |
| BstSLI | GKGCMC | 1 cut(s) | 168 |
| BstV1I | GCAGC | 7 cut(s) | 41, 640, 824, 1066, 1190, 1370, 1379 |
| BstV2I | GAAGAC | 1 cut(s) | 1255 |
| BstX2I | RGATCY | 1 cut(s) | 738 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1330 |
| BstYI | RGATCY | 1 cut(s) | 738 |
| BsuRI | GGCC | 3 cut(s) | 415, 688, 930 |
| BtgZI | GCGATG | 1 cut(s) | 329 |
| BtsCI | GGATG | 5 cut(s) | 127, 248, 554, 933, 1396 |
| BtsIMutI | CAGTG | 2 cut(s) | 166, 825 |
| Cac8I | GCNNGC | 1 cut(s) | 658 |
| CciI | TCATGA | 1 cut(s) | 999 |
| Cfr10I | RCCGGY | 1 cut(s) | 125 |
| Cfr13I | GGNCC | 4 cut(s) | 386, 413, 686, 970 |
| Csp6I | GTAC | 4 cut(s) | 223, 298, 456, 1070 |
| CviQI | GTAC | 4 cut(s) | 223, 298, 456, 1070 |
| DdeI | CTNAG | 3 cut(s) | 212, 593, 938 |
| DpnI | GATC | 9 cut(s) | 45, 57, 157, 272, 539, 620, 740, 1127, 1139 |
| DpnII | GATC | 9 cut(s) | 43, 55, 155, 270, 537, 618, 738, 1125, 1137 |
| EciI | GGCGGA | 1 cut(s) | 267 |
| Eco130I | CCWWGG | 3 cut(s) | 81, 693, 1130 |
| Eco147I | AGGCCT | 1 cut(s) | 930 |
| Eco32I | GATATC | 1 cut(s) | 894 |
| Eco47I | GGWCC | 2 cut(s) | 386, 970 |
| Eco57I | CTGAAG | 3 cut(s) | 343, 865, 945 |
| Eco88I | CYCGRG | 1 cut(s) | 320 |
| Eco91I | GGTNACC | 1 cut(s) | 914 |
| EcoO109I | RGGNCCY | 1 cut(s) | 386 |
| EcoO65I | GGTNACC | 1 cut(s) | 914 |
| EcoRII | CCWGG | 1 cut(s) | 1386 |
| EcoRV | GATATC | 1 cut(s) | 894 |
| EcoT14I | CCWWGG | 3 cut(s) | 81, 693, 1130 |
| EcoT22I | ATGCAT | 1 cut(s) | 479 |
| ErhI | CCWWGG | 3 cut(s) | 81, 693, 1130 |
| FaqI | GGGAC | 1 cut(s) | 19 |
| FbaI | TGATCA | 1 cut(s) | 537 |
| FblI | GTMKAC | 1 cut(s) | 217 |
| Fnu4HI | GCNGC | 7 cut(s) | 30, 654, 813, 1055, 1179, 1359, 1368 |
| FokI | GGATG | 5 cut(s) | 134, 255, 561, 920, 1403 |
| Fsp4HI | GCNGC | 7 cut(s) | 30, 654, 813, 1055, 1179, 1359, 1368 |
| FspBI | CTAG | 2 cut(s) | 629, 1073 |
| GluI | GCNGC | 7 cut(s) | 30, 654, 813, 1055, 1179, 1359, 1368 |
| HaeIII | GGCC | 3 cut(s) | 415, 688, 930 |
| HapII | CCGG | 1 cut(s) | 126 |
| HinfI | GANTC | 2 cut(s) | 7, 724 |
| HpaII | CCGG | 1 cut(s) | 126 |
| HphI | GGTGA | 3 cut(s) | 280, 1006, 1147 |
| Hpy166II | GTNNAC | 3 cut(s) | 166, 218, 490 |
| Hpy188I | TCNGA | 6 cut(s) | 242, 275, 362, 729, 925, 955 |
| Hpy188III | TCNNGA | 5 cut(s) | 53, 92, 374, 791, 1000 |
| Hpy8I | GTNNAC | 3 cut(s) | 166, 218, 490 |
| HpyAV | CCTTC | 4 cut(s) | 475, 703, 817, 920 |
| HpyCH4III | ACNGT | 4 cut(s) | 170, 222, 525, 1174 |
| HpyCH4V | TGCA | 7 cut(s) | 166, 477, 660, 1054, 1088, 1211, 1367 |
| HpyF10VI | GCNNNNNNNGC | 8 cut(s) | 35, 354, 449, 653, 761, 809, 1364, 1367 |
| HpyF3I | CTNAG | 3 cut(s) | 212, 593, 938 |
| Ksp22I | TGATCA | 1 cut(s) | 537 |
| Kzo9I | GATC | 9 cut(s) | 43, 55, 155, 270, 537, 618, 738, 1125, 1137 |
| LmnI | GCTCC | 3 cut(s) | 205, 275, 513 |
| Lsp1109I | GCAGC | 7 cut(s) | 41, 640, 824, 1066, 1190, 1370, 1379 |
| LweI | GCATC | 4 cut(s) | 112, 539, 669, 1381 |
| MaeI | CTAG | 2 cut(s) | 629, 1073 |
| MaeIII | GTNAC | 6 cut(s) | 283, 374, 854, 865, 914, 1146 |
| MalI | GATC | 9 cut(s) | 45, 57, 157, 272, 539, 620, 740, 1127, 1139 |
| MboI | GATC | 9 cut(s) | 43, 55, 155, 270, 537, 618, 738, 1125, 1137 |
| MboII | GAAGA | 4 cut(s) | 669, 871, 1255, 1258 |
| MfeI | CAATTG | 1 cut(s) | 335 |
| MflI | RGATCY | 1 cut(s) | 738 |
| MhlI | GDGCHC | 2 cut(s) | 168, 321 |
| MluCI | AATT | 7 cut(s) | 255, 335, 417, 673, 795, 1106, 1380 |
| MmeI | TCCRAC | 1 cut(s) | 1048 |
| MnlI | CCTC | 5 cut(s) | 216, 248, 461, 941, 1250 |
| Mph1103I | ATGCAT | 1 cut(s) | 479 |
| MroXI | GAANNNNTTC | 3 cut(s) | 676, 989, 1010 |
| MseI | TTAA | 3 cut(s) | 144, 744, 1281 |
| MslI | CAYNNNNRTG | 2 cut(s) | 998, 1328 |
| MspA1I | CMGCKG | 2 cut(s) | 1034, 1370 |
| MspI | CCGG | 1 cut(s) | 126 |
| MspR9I | CCNGG | 1 cut(s) | 1388 |
| MunI | CAATTG | 1 cut(s) | 335 |
| MvaI | CCWGG | 1 cut(s) | 1388 |
| MwoI | GCNNNNNNNGC | 8 cut(s) | 35, 354, 449, 653, 761, 809, 1364, 1367 |
| NdeII | GATC | 9 cut(s) | 43, 55, 155, 270, 537, 618, 738, 1125, 1137 |
| NlaIV | GGNNCC | 5 cut(s) | 15, 130, 388, 972, 981 |
| NmuCI | GTSAC | 3 cut(s) | 374, 865, 1146 |
| NsiI | ATGCAT | 1 cut(s) | 479 |
| NspI | RCATGY | 1 cut(s) | 496 |
| PaeR7I | CTCGAG | 1 cut(s) | 320 |
| PagI | TCATGA | 1 cut(s) | 999 |
| PceI | AGGCCT | 1 cut(s) | 930 |
| PdmI | GAANNNNTTC | 3 cut(s) | 676, 989, 1010 |
| PfeI | GAWTC | 1 cut(s) | 724 |
| Pfl23II | CGTACG | 1 cut(s) | 222 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1196 |
| PkrI | GCNGC | 7 cut(s) | 31, 655, 814, 1056, 1180, 1360, 1369 |
| Ple19I | CGATCG | 1 cut(s) | 46 |
| PpuMI | RGGWCCY | 1 cut(s) | 386 |
| Psp5II | RGGWCCY | 1 cut(s) | 386 |
| Psp6I | CCWGG | 1 cut(s) | 1386 |
| PspEI | GGTNACC | 1 cut(s) | 914 |
| PspGI | CCWGG | 1 cut(s) | 1386 |
| PspLI | CGTACG | 1 cut(s) | 222 |
| PspN4I | GGNNCC | 5 cut(s) | 15, 130, 388, 972, 981 |
| PspPI | GGNCC | 4 cut(s) | 386, 413, 686, 970 |
| PspPPI | RGGWCCY | 1 cut(s) | 386 |
| PspXI | VCTCGAGB | 1 cut(s) | 320 |
| PstI | CTGCAG | 1 cut(s) | 1056 |
| PsuI | RGATCY | 1 cut(s) | 738 |
| PvuI | CGATCG | 1 cut(s) | 46 |
| PvuII | CAGCTG | 1 cut(s) | 1370 |
| RsaI | GTAC | 4 cut(s) | 224, 299, 457, 1071 |
| RsaNI | GTAC | 4 cut(s) | 223, 298, 456, 1070 |
| RseI | CAYNNNNRTG | 2 cut(s) | 998, 1328 |
| SaqAI | TTAA | 3 cut(s) | 144, 744, 1281 |
| SatI | GCNGC | 7 cut(s) | 30, 654, 813, 1055, 1179, 1359, 1368 |
| Sau3AI | GATC | 9 cut(s) | 43, 55, 155, 270, 537, 618, 738, 1125, 1137 |
| Sau96I | GGNCC | 4 cut(s) | 386, 413, 686, 970 |
| ScaI | AGTACT | 1 cut(s) | 1071 |
| ScrFI | CCNGG | 1 cut(s) | 1388 |
| SduI | GDGCHC | 2 cut(s) | 168, 321 |
| SetI | ASST | 7 cut(s) | 87, 208, 306, 609, 1117, 1280, 1372 |
| SfaNI | GCATC | 4 cut(s) | 112, 539, 669, 1381 |
| SfcI | CTRYAG | 2 cut(s) | 634, 1052 |
| Sfr274I | CTCGAG | 1 cut(s) | 320 |
| SinI | GGWCC | 2 cut(s) | 386, 970 |
| SlaI | CTCGAG | 1 cut(s) | 320 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 998, 1328 |
| SmlI | CTYRAG | 1 cut(s) | 320 |
| SmoI | CTYRAG | 1 cut(s) | 320 |
| Sse9I | AATT | 7 cut(s) | 255, 335, 417, 673, 795, 1106, 1380 |
| SseBI | AGGCCT | 1 cut(s) | 930 |
| SsiI | CCGC | 2 cut(s) | 252, 1032 |
| SspMI | CTAG | 2 cut(s) | 629, 1073 |
| StuI | AGGCCT | 1 cut(s) | 930 |
| StyD4I | CCNGG | 1 cut(s) | 1386 |
| StyI | CCWWGG | 3 cut(s) | 81, 693, 1130 |
| TaaI | ACNGT | 4 cut(s) | 170, 222, 525, 1174 |
| TaqI | TCGA | 3 cut(s) | 321, 1117, 1242 |
| TaqII | GACCGA | 1 cut(s) | 1134 |
| TasI | AATT | 7 cut(s) | 255, 335, 417, 673, 795, 1106, 1380 |
| TatI | WGTACW | 2 cut(s) | 455, 1069 |
| TfiI | GAWTC | 1 cut(s) | 724 |
| Tru1I | TTAA | 3 cut(s) | 144, 744, 1281 |
| Tru9I | TTAA | 3 cut(s) | 144, 744, 1281 |
| TscAI | CASTG | 2 cut(s) | 173, 825 |
| TseFI | GTSAC | 3 cut(s) | 374, 865, 1146 |
| TseI | GCWGC | 7 cut(s) | 29, 653, 812, 1054, 1178, 1358, 1367 |
| Tsp45I | GTSAC | 3 cut(s) | 374, 865, 1146 |
| TspDTI | ATGAA | 9 cut(s) | 117, 494, 533, 544, 982, 988, 1080, 1222, 1237 |
| TspRI | CASTG | 2 cut(s) | 173, 825 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1196 |
| VneI | GTGCAC | 1 cut(s) | 164 |
| VpaK11BI | GGWCC | 2 cut(s) | 386, 970 |
| XapI | RAATTY | 3 cut(s) | 673, 795, 1106 |
| XceI | RCATGY | 1 cut(s) | 496 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1327 |
| XhoI | CTCGAG | 1 cut(s) | 320 |
| XmiI | GTMKAC | 1 cut(s) | 217 |
| XmnI | GAANNNNTTC | 3 cut(s) | 676, 989, 1010 |
| XspI | CTAG | 2 cut(s) | 629, 1073 |
| ZrmI | AGTACT | 1 cut(s) | 1071 |
| Zsp2I | ATGCAT | 1 cut(s) | 479 |