Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 2 cut(s) | 509, 540 |
| AciI | CCGC | 1 cut(s) | 153 |
| AclWI | GGATC | 1 cut(s) | 357 |
| AcsI | RAATTY | 1 cut(s) | 731 |
| AfaI | GTAC | 2 cut(s) | 468, 475 |
| AgsI | TTSAA | 3 cut(s) | 377, 430, 743 |
| AjnI | CCWGG | 1 cut(s) | 75 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 569, 601 |
| AluBI | AGCT | 2 cut(s) | 65, 215 |
| AluI | AGCT | 2 cut(s) | 65, 215 |
| Alw26I | GTCTC | 2 cut(s) | 310, 612 |
| AlwI | GGATC | 1 cut(s) | 357 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 665 |
| ApeKI | GCWGC | 2 cut(s) | 482, 515 |
| ApoI | RAATTY | 1 cut(s) | 731 |
| AspLEI | GCGC | 2 cut(s) | 252, 315 |
| AspS9I | GGNCC | 3 cut(s) | 79, 366, 561 |
| AsuHPI | GGTGA | 2 cut(s) | 89, 142 |
| AsuNHI | GCTAGC | 1 cut(s) | 211 |
| AvaII | GGWCC | 3 cut(s) | 79, 366, 561 |
| BbvI | GCAGC | 2 cut(s) | 469, 502 |
| BccI | CCATC | 3 cut(s) | 273, 409, 520 |
| BceAI | ACGGC | 1 cut(s) | 18 |
| BciT130I | CCWGG | 1 cut(s) | 77 |
| BclI | TGATCA | 1 cut(s) | 642 |
| BcoDI | GTCTC | 2 cut(s) | 310, 612 |
| BfaI | CTAG | 5 cut(s) | 122, 212, 342, 383, 714 |
| BfmI | CTRYAG | 1 cut(s) | 516 |
| BfoI | RGCGCY | 1 cut(s) | 316 |
| BfuAI | ACCTGC | 2 cut(s) | 509, 540 |
| BglII | AGATCT | 1 cut(s) | 232 |
| BisI | GCNGC | 2 cut(s) | 483, 516 |
| BlsI | GCNGC | 2 cut(s) | 484, 517 |
| Bme1390I | CCNGG | 1 cut(s) | 77 |
| Bme18I | GGWCC | 3 cut(s) | 79, 366, 561 |
| BmgT120I | GGNCC | 3 cut(s) | 79, 366, 561 |
| BmrFI | CCNGG | 1 cut(s) | 77 |
| BmsI | GCATC | 4 cut(s) | 48, 134, 347, 536 |
| BmtI | GCTAGC | 1 cut(s) | 215 |
| BpuEI | CTTGAG | 1 cut(s) | 221 |
| BsaAI | YACGTR | 2 cut(s) | 158, 558 |
| BsaBI | GATNNNNATC | 1 cut(s) | 705 |
| BsaI | GGTCTC | 1 cut(s) | 612 |
| BsaJI | CCNNGG | 3 cut(s) | 34, 407, 725 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 288, 318, 637, 667 |
| Bse8I | GATNNNNATC | 1 cut(s) | 705 |
| BseBI | CCWGG | 1 cut(s) | 77 |
| BseDI | CCNNGG | 3 cut(s) | 34, 407, 725 |
| BseGI | GGATG | 2 cut(s) | 551, 706 |
| BseJI | GATNNNNATC | 1 cut(s) | 705 |
| BseMII | CTCAG | 2 cut(s) | 189, 672 |
| BseXI | GCAGC | 2 cut(s) | 469, 502 |
| BseYI | CCCAGC | 1 cut(s) | 57 |
| BsmAI | GTCTC | 2 cut(s) | 310, 612 |
| Bso31I | GGTCTC | 1 cut(s) | 612 |
| Bsp143I | GATC | 4 cut(s) | 69, 232, 349, 642 |
| BspACI | CCGC | 1 cut(s) | 153 |
| BspCNI | CTCAG | 2 cut(s) | 190, 671 |
| BspMAI | CTGCAG | 1 cut(s) | 520 |
| BspMI | ACCTGC | 2 cut(s) | 509, 540 |
| BspOI | GCTAGC | 1 cut(s) | 215 |
| BspPI | GGATC | 1 cut(s) | 357 |
| BspTNI | GGTCTC | 1 cut(s) | 612 |
| BssECI | CCNNGG | 3 cut(s) | 34, 407, 725 |
| BssMI | GATC | 4 cut(s) | 69, 232, 349, 642 |
| BssT1I | CCWWGG | 1 cut(s) | 407 |
| Bst2UI | CCWGG | 1 cut(s) | 77 |
| Bst4CI | ACNGT | 1 cut(s) | 612 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 180 |
| BstBAI | YACGTR | 2 cut(s) | 158, 558 |
| BstC8I | GCNNGC | 3 cut(s) | 63, 172, 213 |
| BstDEI | CTNAG | 3 cut(s) | 198, 370, 658 |
| BstDSI | CCRYGG | 1 cut(s) | 34 |
| BstF5I | GGATG | 2 cut(s) | 551, 706 |
| BstH2I | RGCGCY | 1 cut(s) | 316 |
| BstHHI | GCGC | 2 cut(s) | 252, 315 |
| BstKTI | GATC | 4 cut(s) | 72, 235, 352, 645 |
| BstMAI | GTCTC | 2 cut(s) | 310, 612 |
| BstMBI | GATC | 4 cut(s) | 69, 232, 349, 642 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 180, 321 |
| BstNI | CCWGG | 1 cut(s) | 77 |
| BstSCI | CCNGG | 1 cut(s) | 75 |
| BstSFI | CTRYAG | 1 cut(s) | 516 |
| BstV1I | GCAGC | 2 cut(s) | 469, 502 |
| BstX2I | RGATCY | 1 cut(s) | 232 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 685 |
| BstYI | RGATCY | 1 cut(s) | 232 |
| BtgI | CCRYGG | 1 cut(s) | 34 |
| BtsCI | GGATG | 2 cut(s) | 551, 706 |
| BtsIMutI | CAGTG | 1 cut(s) | 617 |
| BveI | ACCTGC | 2 cut(s) | 509, 540 |
| Cac8I | GCNNGC | 3 cut(s) | 63, 172, 213 |
| CaiI | CAGNNNCTG | 1 cut(s) | 665 |
| CfoI | GCGC | 2 cut(s) | 252, 315 |
| Cfr13I | GGNCC | 3 cut(s) | 79, 366, 561 |
| CseI | GACGC | 1 cut(s) | 284 |
| CsiI | ACCWGGT | 1 cut(s) | 75 |
| Csp6I | GTAC | 2 cut(s) | 467, 474 |
| CspCI | CAANNNNNGTGG | 4 cut(s) | 442, 477, 492, 527 |
| CviAII | CATG | 2 cut(s) | 363, 487 |
| CviJI | RGCY | 7 cut(s) | 65, 196, 211, 215, 449, 515, 597 |
| CviKI_1 | RGCY | 7 cut(s) | 65, 196, 211, 215, 449, 515, 597 |
| CviQI | GTAC | 2 cut(s) | 467, 474 |
| DdeI | CTNAG | 3 cut(s) | 198, 370, 658 |
| DpnI | GATC | 4 cut(s) | 71, 234, 351, 644 |
| DpnII | GATC | 4 cut(s) | 69, 232, 349, 642 |
| Eco130I | CCWWGG | 1 cut(s) | 407 |
| Eco31I | GGTCTC | 1 cut(s) | 612 |
| Eco47I | GGWCC | 3 cut(s) | 79, 366, 561 |
| EcoRII | CCWGG | 1 cut(s) | 75 |
| EcoT14I | CCWWGG | 1 cut(s) | 407 |
| ErhI | CCWWGG | 1 cut(s) | 407 |
| FaeI | CATG | 2 cut(s) | 366, 490 |
| FatI | CATG | 2 cut(s) | 362, 486 |
| FbaI | TGATCA | 1 cut(s) | 642 |
| Fnu4HI | GCNGC | 2 cut(s) | 483, 516 |
| FokI | GGATG | 2 cut(s) | 558, 693 |
| Fsp4HI | GCNGC | 2 cut(s) | 483, 516 |
| FspBI | CTAG | 5 cut(s) | 122, 212, 342, 383, 714 |
| GlaI | GCGC | 2 cut(s) | 251, 314 |
| GluI | GCNGC | 2 cut(s) | 483, 516 |
| GsaI | CCCAGC | 1 cut(s) | 61 |
| HaeII | RGCGCY | 1 cut(s) | 316 |
| HgaI | GACGC | 1 cut(s) | 284 |
| HhaI | GCGC | 2 cut(s) | 252, 315 |
| Hin1II | CATG | 2 cut(s) | 366, 490 |
| Hin6I | GCGC | 2 cut(s) | 250, 313 |
| HinP1I | GCGC | 2 cut(s) | 250, 313 |
| HinfI | GANTC | 2 cut(s) | 490, 662 |
| HphI | GGTGA | 2 cut(s) | 89, 142 |
| Hpy166II | GTNNAC | 3 cut(s) | 467, 555, 573 |
| Hpy188I | TCNGA | 7 cut(s) | 115, 232, 289, 501, 661, 667, 729 |
| Hpy8I | GTNNAC | 3 cut(s) | 467, 555, 573 |
| HpyAV | CCTTC | 3 cut(s) | 271, 571, 740 |
| HpyCH4III | ACNGT | 1 cut(s) | 612 |
| HpyCH4IV | ACGT | 3 cut(s) | 157, 557, 718 |
| HpyCH4V | TGCA | 4 cut(s) | 188, 338, 518, 549 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 180, 321 |
| HpyF3I | CTNAG | 3 cut(s) | 198, 370, 658 |
| HpySE526I | ACGT | 3 cut(s) | 157, 557, 718 |
| Hsp92II | CATG | 2 cut(s) | 366, 490 |
| HspAI | GCGC | 2 cut(s) | 250, 313 |
| Ksp22I | TGATCA | 1 cut(s) | 642 |
| Kzo9I | GATC | 4 cut(s) | 69, 232, 349, 642 |
| Lsp1109I | GCAGC | 2 cut(s) | 469, 502 |
| LweI | GCATC | 4 cut(s) | 48, 134, 347, 536 |
| MabI | ACCWGGT | 1 cut(s) | 75 |
| MaeI | CTAG | 5 cut(s) | 122, 212, 342, 383, 714 |
| MaeII | ACGT | 3 cut(s) | 157, 557, 718 |
| MalI | GATC | 4 cut(s) | 71, 234, 351, 644 |
| MboI | GATC | 4 cut(s) | 69, 232, 349, 642 |
| MboII | GAAGA | 1 cut(s) | 97 |
| MflI | RGATCY | 1 cut(s) | 232 |
| MluCI | AATT | 2 cut(s) | 394, 731 |
| MlyI | GAGTC | 2 cut(s) | 484, 656 |
| MmeI | TCCRAC | 1 cut(s) | 588 |
| MnlI | CCTC | 7 cut(s) | 105, 110, 480, 587, 663, 667, 735 |
| MseI | TTAA | 2 cut(s) | 218, 632 |
| MslI | CAYNNNNRTG | 1 cut(s) | 683 |
| MspR9I | CCNGG | 1 cut(s) | 77 |
| MvaI | CCWGG | 1 cut(s) | 77 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 180, 321 |
| NdeII | GATC | 4 cut(s) | 69, 232, 349, 642 |
| NheI | GCTAGC | 1 cut(s) | 211 |
| NlaIII | CATG | 2 cut(s) | 366, 490 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 733 |
| PflFI | GACNNNGTC | 2 cut(s) | 77, 720 |
| PkrI | GCNGC | 2 cut(s) | 484, 517 |
| PleI | GAGTC | 2 cut(s) | 484, 656 |
| PpsI | GAGTC | 2 cut(s) | 484, 656 |
| Ppu21I | YACGTR | 2 cut(s) | 158, 558 |
| Psp6I | CCWGG | 1 cut(s) | 75 |
| PspFI | CCCAGC | 1 cut(s) | 57 |
| PspGI | CCWGG | 1 cut(s) | 75 |
| PspPI | GGNCC | 3 cut(s) | 79, 366, 561 |
| PstI | CTGCAG | 1 cut(s) | 520 |
| PstNI | CAGNNNCTG | 1 cut(s) | 665 |
| PsuI | RGATCY | 1 cut(s) | 232 |
| PsyI | GACNNNGTC | 2 cut(s) | 77, 720 |
| RsaI | GTAC | 2 cut(s) | 468, 475 |
| RsaNI | GTAC | 2 cut(s) | 467, 474 |
| RseI | CAYNNNNRTG | 1 cut(s) | 683 |
| SaqAI | TTAA | 2 cut(s) | 218, 632 |
| SatI | GCNGC | 2 cut(s) | 483, 516 |
| Sau3AI | GATC | 4 cut(s) | 69, 232, 349, 642 |
| Sau96I | GGNCC | 3 cut(s) | 79, 366, 561 |
| SchI | GAGTC | 2 cut(s) | 484, 656 |
| ScrFI | CCNGG | 1 cut(s) | 77 |
| SexAI | ACCWGGT | 1 cut(s) | 75 |
| SfaNI | GCATC | 4 cut(s) | 48, 134, 347, 536 |
| SfcI | CTRYAG | 1 cut(s) | 516 |
| SinI | GGWCC | 3 cut(s) | 79, 366, 561 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 683 |
| SmlI | CTYRAG | 1 cut(s) | 236 |
| SmoI | CTYRAG | 1 cut(s) | 236 |
| Sse9I | AATT | 2 cut(s) | 394, 731 |
| SsiI | CCGC | 1 cut(s) | 153 |
| SspMI | CTAG | 5 cut(s) | 122, 212, 342, 383, 714 |
| StyD4I | CCNGG | 1 cut(s) | 75 |
| StyI | CCWWGG | 1 cut(s) | 407 |
| TaaI | ACNGT | 1 cut(s) | 612 |
| TaiI | ACGT | 3 cut(s) | 160, 560, 721 |
| TaqI | TCGA | 3 cut(s) | 72, 352, 637 |
| TasI | AATT | 2 cut(s) | 394, 731 |
| Tru1I | TTAA | 2 cut(s) | 218, 632 |
| Tru9I | TTAA | 2 cut(s) | 218, 632 |
| TscAI | CASTG | 1 cut(s) | 617 |
| TseI | GCWGC | 2 cut(s) | 482, 515 |
| TspRI | CASTG | 1 cut(s) | 617 |
| Tth111I | GACNNNGTC | 2 cut(s) | 77, 720 |
| VpaK11BI | GGWCC | 3 cut(s) | 79, 366, 561 |
| XapI | RAATTY | 1 cut(s) | 731 |
| XspI | CTAG | 5 cut(s) | 122, 212, 342, 383, 714 |