Ribonuclease H protein
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccBSI | CCGCTC | 1 cut(s) | 542 |
| AccI | GTMKAC | 1 cut(s) | 374 |
| AciI | CCGC | 1 cut(s) | 542 |
| AcsI | RAATTY | 1 cut(s) | 389 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 505 |
| AflIII | ACRYGT | 1 cut(s) | 585 |
| AgsI | TTSAA | 3 cut(s) | 13, 250, 563 |
| AjnI | CCWGG | 1 cut(s) | 128 |
| AluBI | AGCT | 1 cut(s) | 296 |
| AluI | AGCT | 1 cut(s) | 296 |
| Alw26I | GTCTC | 1 cut(s) | 337 |
| Ama87I | CYCGRG | 1 cut(s) | 291 |
| AoxI | GGCC | 1 cut(s) | 283 |
| ApeKI | GCWGC | 2 cut(s) | 296, 299 |
| ApoI | RAATTY | 1 cut(s) | 389 |
| AspLEI | GCGC | 2 cut(s) | 18, 552 |
| AspS9I | GGNCC | 2 cut(s) | 4, 284 |
| AsuHPI | GGTGA | 1 cut(s) | 45 |
| AvaI | CYCGRG | 1 cut(s) | 291 |
| AvaII | GGWCC | 1 cut(s) | 4 |
| BauI | CACGAG | 1 cut(s) | 115 |
| BbvI | GCAGC | 2 cut(s) | 283, 286 |
| BccI | CCATC | 1 cut(s) | 340 |
| BceAI | ACGGC | 1 cut(s) | 563 |
| BciT130I | CCWGG | 1 cut(s) | 130 |
| BclI | TGATCA | 1 cut(s) | 487 |
| BcoDI | GTCTC | 1 cut(s) | 337 |
| BfaI | CTAG | 2 cut(s) | 47, 203 |
| BfmI | CTRYAG | 2 cut(s) | 336, 451 |
| BfoI | RGCGCY | 2 cut(s) | 19, 553 |
| BglII | AGATCT | 1 cut(s) | 439 |
| BisI | GCNGC | 2 cut(s) | 297, 300 |
| BlsI | GCNGC | 2 cut(s) | 298, 301 |
| Bme1390I | CCNGG | 1 cut(s) | 130 |
| Bme18I | GGWCC | 1 cut(s) | 4 |
| BmeT110I | CYCGRG | 1 cut(s) | 291 |
| BmgT120I | GGNCC | 2 cut(s) | 4, 284 |
| BmrFI | CCNGG | 1 cut(s) | 130 |
| BsaBI | GATNNNNATC | 1 cut(s) | 486 |
| BsaI | GGTCTC | 1 cut(s) | 337 |
| BsaJI | CCNNGG | 4 cut(s) | 128, 129, 227, 431 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 457, 487 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 505 |
| Bse3DI | GCAATG | 1 cut(s) | 134 |
| Bse8I | GATNNNNATC | 1 cut(s) | 486 |
| BseBI | CCWGG | 1 cut(s) | 130 |
| BseDI | CCNNGG | 4 cut(s) | 128, 129, 227, 431 |
| BseJI | GATNNNNATC | 1 cut(s) | 486 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 505 |
| BseMI | GCAATG | 1 cut(s) | 134 |
| BseMII | CTCAG | 1 cut(s) | 35 |
| BseXI | GCAGC | 2 cut(s) | 283, 286 |
| BshFI | GGCC | 1 cut(s) | 285 |
| BsiHKCI | CYCGRG | 1 cut(s) | 291 |
| BslFI | GGGAC | 1 cut(s) | 558 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 505 |
| BsmAI | GTCTC | 1 cut(s) | 337 |
| BsmFI | GGGAC | 1 cut(s) | 558 |
| BsnI | GGCC | 1 cut(s) | 285 |
| Bso31I | GGTCTC | 1 cut(s) | 337 |
| BsoBI | CYCGRG | 1 cut(s) | 291 |
| Bsp143I | GATC | 4 cut(s) | 409, 439, 487, 597 |
| Bsp19I | CCATGG | 1 cut(s) | 431 |
| BspACI | CCGC | 1 cut(s) | 542 |
| BspANI | GGCC | 1 cut(s) | 285 |
| BspCNI | CTCAG | 1 cut(s) | 34 |
| BspMAI | CTGCAG | 1 cut(s) | 340 |
| BspTNI | GGTCTC | 1 cut(s) | 337 |
| BsrBI | CCGCTC | 1 cut(s) | 542 |
| BsrDI | GCAATG | 1 cut(s) | 134 |
| BssECI | CCNNGG | 4 cut(s) | 128, 129, 227, 431 |
| BssMI | GATC | 4 cut(s) | 409, 439, 487, 597 |
| BssNAI | GTATAC | 1 cut(s) | 375 |
| BssSI | CACGAG | 1 cut(s) | 115 |
| BssT1I | CCWWGG | 2 cut(s) | 227, 431 |
| Bst1107I | GTATAC | 1 cut(s) | 375 |
| Bst2BI | CACGAG | 1 cut(s) | 115 |
| Bst2UI | CCWGG | 1 cut(s) | 130 |
| BstC8I | GCNNGC | 1 cut(s) | 340 |
| BstDEI | CTNAG | 1 cut(s) | 21 |
| BstDSI | CCRYGG | 1 cut(s) | 431 |
| BstH2I | RGCGCY | 2 cut(s) | 19, 553 |
| BstHHI | GCGC | 2 cut(s) | 18, 552 |
| BstKTI | GATC | 4 cut(s) | 412, 442, 490, 600 |
| BstMAI | GTCTC | 1 cut(s) | 337 |
| BstMBI | GATC | 4 cut(s) | 409, 439, 487, 597 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 308 |
| BstNI | CCWGG | 1 cut(s) | 130 |
| BstNSI | RCATGY | 1 cut(s) | 589 |
| BstSCI | CCNGG | 1 cut(s) | 128 |
| BstSFI | CTRYAG | 2 cut(s) | 336, 451 |
| BstV1I | GCAGC | 2 cut(s) | 283, 286 |
| BstX2I | RGATCY | 1 cut(s) | 439 |
| BstYI | RGATCY | 1 cut(s) | 439 |
| BstZ17I | GTATAC | 1 cut(s) | 375 |
| BsuRI | GGCC | 1 cut(s) | 285 |
| BtgI | CCRYGG | 1 cut(s) | 431 |
| Cac8I | GCNNGC | 1 cut(s) | 340 |
| CfoI | GCGC | 2 cut(s) | 18, 552 |
| Cfr13I | GGNCC | 2 cut(s) | 4, 284 |
| CseI | GACGC | 1 cut(s) | 330 |
| CviAII | CATG | 5 cut(s) | 378, 432, 575, 586, 592 |
| CviJI | RGCY | 7 cut(s) | 50, 167, 232, 285, 296, 311, 342 |
| CviKI_1 | RGCY | 7 cut(s) | 50, 167, 232, 285, 296, 311, 342 |
| DdeI | CTNAG | 1 cut(s) | 21 |
| DpnI | GATC | 4 cut(s) | 411, 441, 489, 599 |
| DpnII | GATC | 4 cut(s) | 409, 439, 487, 597 |
| Eco130I | CCWWGG | 2 cut(s) | 227, 431 |
| Eco31I | GGTCTC | 1 cut(s) | 337 |
| Eco47I | GGWCC | 1 cut(s) | 4 |
| Eco88I | CYCGRG | 1 cut(s) | 291 |
| EcoRII | CCWGG | 1 cut(s) | 128 |
| EcoT14I | CCWWGG | 2 cut(s) | 227, 431 |
| ErhI | CCWWGG | 2 cut(s) | 227, 431 |
| FaeI | CATG | 5 cut(s) | 381, 435, 578, 589, 595 |
| FaqI | GGGAC | 1 cut(s) | 558 |
| FatI | CATG | 5 cut(s) | 377, 431, 574, 585, 591 |
| FauI | CCCGC | 1 cut(s) | 535 |
| FbaI | TGATCA | 1 cut(s) | 487 |
| FblI | GTMKAC | 1 cut(s) | 374 |
| Fnu4HI | GCNGC | 2 cut(s) | 297, 300 |
| Fsp4HI | GCNGC | 2 cut(s) | 297, 300 |
| FspBI | CTAG | 2 cut(s) | 47, 203 |
| GlaI | GCGC | 2 cut(s) | 17, 551 |
| GluI | GCNGC | 2 cut(s) | 297, 300 |
| HaeII | RGCGCY | 2 cut(s) | 19, 553 |
| HaeIII | GGCC | 1 cut(s) | 285 |
| HgaI | GACGC | 1 cut(s) | 330 |
| HhaI | GCGC | 2 cut(s) | 18, 552 |
| Hin1II | CATG | 5 cut(s) | 381, 435, 578, 589, 595 |
| Hin6I | GCGC | 2 cut(s) | 16, 550 |
| HinP1I | GCGC | 2 cut(s) | 16, 550 |
| HinfI | GANTC | 3 cut(s) | 68, 124, 482 |
| HphI | GGTGA | 1 cut(s) | 45 |
| Hpy166II | GTNNAC | 1 cut(s) | 375 |
| Hpy188I | TCNGA | 2 cut(s) | 271, 487 |
| Hpy188III | TCNNGA | 2 cut(s) | 115, 162 |
| Hpy8I | GTNNAC | 1 cut(s) | 375 |
| HpyAV | CCTTC | 1 cut(s) | 121 |
| HpyCH4V | TGCA | 3 cut(s) | 139, 338, 591 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 308 |
| HpyF3I | CTNAG | 1 cut(s) | 21 |
| Hsp92II | CATG | 5 cut(s) | 381, 435, 578, 589, 595 |
| HspAI | GCGC | 2 cut(s) | 16, 550 |
| Ksp22I | TGATCA | 1 cut(s) | 487 |
| Kzo9I | GATC | 4 cut(s) | 409, 439, 487, 597 |
| LmnI | GCTCC | 1 cut(s) | 307 |
| LpnPI | CCDG | 7 cut(s) | 115, 142, 175, 225, 264, 324, 512 |
| Lsp1109I | GCAGC | 2 cut(s) | 283, 286 |
| MaeI | CTAG | 2 cut(s) | 47, 203 |
| MaeIII | GTNAC | 1 cut(s) | 463 |
| MalI | GATC | 4 cut(s) | 411, 441, 489, 599 |
| MbiI | CCGCTC | 1 cut(s) | 542 |
| MboI | GATC | 4 cut(s) | 409, 439, 487, 597 |
| MboII | GAAGA | 2 cut(s) | 22, 575 |
| MfeI | CAATTG | 1 cut(s) | 8 |
| MflI | RGATCY | 1 cut(s) | 439 |
| MluCI | AATT | 3 cut(s) | 8, 63, 389 |
| MnlI | CCTC | 5 cut(s) | 30, 61, 83, 300, 483 |
| MseI | TTAA | 1 cut(s) | 26 |
| MslI | CAYNNNNRTG | 3 cut(s) | 144, 579, 590 |
| MspR9I | CCNGG | 1 cut(s) | 130 |
| MunI | CAATTG | 1 cut(s) | 8 |
| MvaI | CCWGG | 1 cut(s) | 130 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 308 |
| NcoI | CCATGG | 1 cut(s) | 431 |
| NdeII | GATC | 4 cut(s) | 409, 439, 487, 597 |
| NlaIII | CATG | 5 cut(s) | 381, 435, 578, 589, 595 |
| NspI | RCATGY | 1 cut(s) | 589 |
| PaeR7I | CTCGAG | 1 cut(s) | 291 |
| PasI | CCCWGGG | 1 cut(s) | 129 |
| PciI | ACATGT | 1 cut(s) | 585 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 553 |
| PfeI | GAWTC | 3 cut(s) | 68, 124, 482 |
| PkrI | GCNGC | 2 cut(s) | 298, 301 |
| PscI | ACATGT | 1 cut(s) | 585 |
| Psp6I | CCWGG | 1 cut(s) | 128 |
| PspGI | CCWGG | 1 cut(s) | 128 |
| PspPI | GGNCC | 2 cut(s) | 4, 284 |
| PspXI | VCTCGAGB | 1 cut(s) | 291 |
| PstI | CTGCAG | 1 cut(s) | 340 |
| PsuI | RGATCY | 1 cut(s) | 439 |
| RseI | CAYNNNNRTG | 3 cut(s) | 144, 579, 590 |
| SaqAI | TTAA | 1 cut(s) | 26 |
| SatI | GCNGC | 2 cut(s) | 297, 300 |
| Sau3AI | GATC | 4 cut(s) | 409, 439, 487, 597 |
| Sau96I | GGNCC | 2 cut(s) | 4, 284 |
| ScrFI | CCNGG | 1 cut(s) | 130 |
| SetI | ASST | 6 cut(s) | 91, 229, 292, 298, 407, 475 |
| SfcI | CTRYAG | 2 cut(s) | 336, 451 |
| Sfr274I | CTCGAG | 1 cut(s) | 291 |
| SinI | GGWCC | 1 cut(s) | 4 |
| SlaI | CTCGAG | 1 cut(s) | 291 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 144, 579, 590 |
| SmlI | CTYRAG | 1 cut(s) | 291 |
| SmoI | CTYRAG | 1 cut(s) | 291 |
| Sse9I | AATT | 3 cut(s) | 8, 63, 389 |
| SsiI | CCGC | 1 cut(s) | 542 |
| SspI | AATATT | 1 cut(s) | 103 |
| SspMI | CTAG | 2 cut(s) | 47, 203 |
| StyD4I | CCNGG | 1 cut(s) | 128 |
| StyI | CCWWGG | 2 cut(s) | 227, 431 |
| TaqI | TCGA | 1 cut(s) | 292 |
| TasI | AATT | 3 cut(s) | 8, 63, 389 |
| TfiI | GAWTC | 3 cut(s) | 68, 124, 482 |
| Tru1I | TTAA | 1 cut(s) | 26 |
| Tru9I | TTAA | 1 cut(s) | 26 |
| TseI | GCWGC | 2 cut(s) | 296, 299 |
| TspDTI | ATGAA | 1 cut(s) | 225 |
| TspGWI | ACGGA | 1 cut(s) | 545 |
| VpaK11BI | GGWCC | 1 cut(s) | 4 |
| XapI | RAATTY | 1 cut(s) | 389 |
| XceI | RCATGY | 1 cut(s) | 589 |
| XhoI | CTCGAG | 1 cut(s) | 291 |
| XmiI | GTMKAC | 1 cut(s) | 374 |
| XspI | CTAG | 2 cut(s) | 47, 203 |