ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Exo_endo_phos | PF03372 | 2 - 135 | 1.1e-07 | Endonuclease/Exonuclease/phosphatase family |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 3 cut(s) | 77, 309, 761 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 58 |
| AciI | CCGC | 1 cut(s) | 547 |
| AclWI | GGATC | 1 cut(s) | 523 |
| AcsI | RAATTY | 2 cut(s) | 657, 723 |
| AfaI | GTAC | 2 cut(s) | 280, 820 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 58, 626 |
| AflIII | ACRYGT | 1 cut(s) | 476 |
| AgsI | TTSAA | 5 cut(s) | 68, 560, 604, 737, 810 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 169, 201 |
| AluBI | AGCT | 5 cut(s) | 289, 305, 395, 412, 442 |
| AluI | AGCT | 5 cut(s) | 289, 305, 395, 412, 442 |
| Alw21I | GWGCWC | 1 cut(s) | 13 |
| Alw26I | GTCTC | 2 cut(s) | 218, 618 |
| AlwI | GGATC | 1 cut(s) | 523 |
| Ama87I | CYCGRG | 1 cut(s) | 390 |
| ApeKI | GCWGC | 3 cut(s) | 286, 305, 409 |
| ApoI | RAATTY | 2 cut(s) | 657, 723 |
| AspLEI | GCGC | 4 cut(s) | 78, 310, 537, 762 |
| AspS9I | GGNCC | 3 cut(s) | 127, 185, 399 |
| AsuHPI | GGTGA | 2 cut(s) | 353, 683 |
| AvaI | CYCGRG | 1 cut(s) | 390 |
| AvaII | GGWCC | 3 cut(s) | 127, 185, 399 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 457, 489 |
| Bbv12I | GWGCWC | 1 cut(s) | 13 |
| BbvI | GCAGC | 3 cut(s) | 292, 298, 421 |
| BccI | CCATC | 1 cut(s) | 498 |
| BcoDI | GTCTC | 2 cut(s) | 218, 618 |
| BfaI | CTAG | 5 cut(s) | 21, 47, 213, 261, 847 |
| BisI | GCNGC | 3 cut(s) | 287, 306, 410 |
| BlsI | GCNGC | 3 cut(s) | 288, 307, 411 |
| BmcAI | AGTACT | 1 cut(s) | 820 |
| Bme18I | GGWCC | 3 cut(s) | 127, 185, 399 |
| BmeT110I | CYCGRG | 1 cut(s) | 390 |
| BmgT120I | GGNCC | 3 cut(s) | 127, 185, 399 |
| BmiI | GGNNCC | 3 cut(s) | 128, 401, 551 |
| BmsI | GCATC | 2 cut(s) | 87, 597 |
| BpmI | CTGGAG | 1 cut(s) | 759 |
| Bpu10I | CCTNAGC | 1 cut(s) | 301 |
| BsaAI | YACGTR | 1 cut(s) | 477 |
| BsaI | GGTCTC | 1 cut(s) | 618 |
| BsaJI | CCNNGG | 3 cut(s) | 85, 130, 326 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 58, 626 |
| Bse1I | ACTGG | 4 cut(s) | 56, 631, 673, 781 |
| BseDI | CCNNGG | 3 cut(s) | 85, 130, 326 |
| BseGI | GGATG | 2 cut(s) | 104, 616 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 58, 626 |
| BseMII | CTCAG | 1 cut(s) | 233 |
| BseNI | ACTGG | 4 cut(s) | 56, 631, 673, 781 |
| BseXI | GCAGC | 3 cut(s) | 292, 298, 421 |
| BseYI | CCCAGC | 1 cut(s) | 51 |
| BsiHKAI | GWGCWC | 1 cut(s) | 13 |
| BsiHKCI | CYCGRG | 1 cut(s) | 390 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 58, 626 |
| BsmAI | GTCTC | 2 cut(s) | 218, 618 |
| BsmI | GAATGC | 2 cut(s) | 590, 642 |
| Bso31I | GGTCTC | 1 cut(s) | 618 |
| BsoBI | CYCGRG | 1 cut(s) | 390 |
| Bsp1286I | GDGCHC | 1 cut(s) | 13 |
| Bsp143I | GATC | 3 cut(s) | 157, 515, 676 |
| Bsp19I | CCATGG | 1 cut(s) | 326 |
| BspACI | CCGC | 1 cut(s) | 547 |
| BspCNI | CTCAG | 1 cut(s) | 232 |
| BspLI | GGNNCC | 3 cut(s) | 128, 401, 551 |
| BspPI | GGATC | 1 cut(s) | 523 |
| BspQI | GCTCTTC | 1 cut(s) | 147 |
| BspTNI | GGTCTC | 1 cut(s) | 618 |
| BsrI | ACTGG | 4 cut(s) | 56, 631, 673, 781 |
| BssECI | CCNNGG | 3 cut(s) | 85, 130, 326 |
| BssMI | GATC | 3 cut(s) | 157, 515, 676 |
| BssT1I | CCWWGG | 3 cut(s) | 85, 130, 326 |
| Bst6I | CTCTTC | 2 cut(s) | 147, 504 |
| BstBAI | YACGTR | 1 cut(s) | 477 |
| BstC8I | GCNNGC | 3 cut(s) | 9, 320, 653 |
| BstDEI | CTNAG | 4 cut(s) | 173, 219, 301, 815 |
| BstDSI | CCRYGG | 1 cut(s) | 326 |
| BstF5I | GGATG | 2 cut(s) | 104, 616 |
| BstHHI | GCGC | 4 cut(s) | 78, 310, 537, 762 |
| BstKTI | GATC | 3 cut(s) | 160, 518, 679 |
| BstMAI | GTCTC | 2 cut(s) | 218, 618 |
| BstMBI | GATC | 3 cut(s) | 157, 515, 676 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 68 |
| BstNSI | RCATGY | 1 cut(s) | 655 |
| BstV1I | GCAGC | 3 cut(s) | 292, 298, 421 |
| BstX2I | RGATCY | 1 cut(s) | 515 |
| BstYI | RGATCY | 1 cut(s) | 515 |
| BtgI | CCRYGG | 1 cut(s) | 326 |
| BtsCI | GGATG | 2 cut(s) | 104, 616 |
| BtsI | GCAGTG | 1 cut(s) | 71 |
| BtsIMutI | CAGTG | 3 cut(s) | 63, 71, 624 |
| Cac8I | GCNNGC | 3 cut(s) | 9, 320, 653 |
| CfoI | GCGC | 4 cut(s) | 78, 310, 537, 762 |
| Cfr13I | GGNCC | 3 cut(s) | 127, 185, 399 |
| Csp6I | GTAC | 2 cut(s) | 279, 819 |
| CviAII | CATG | 8 cut(s) | 114, 164, 315, 327, 461, 572, 652, 757 |
| CviQI | GTAC | 2 cut(s) | 279, 819 |
| DdeI | CTNAG | 4 cut(s) | 173, 219, 301, 815 |
| DpnI | GATC | 3 cut(s) | 159, 517, 678 |
| DpnII | GATC | 3 cut(s) | 157, 515, 676 |
| Eam1104I | CTCTTC | 2 cut(s) | 147, 504 |
| EarI | CTCTTC | 2 cut(s) | 147, 504 |
| Eco130I | CCWWGG | 3 cut(s) | 85, 130, 326 |
| Eco31I | GGTCTC | 1 cut(s) | 618 |
| Eco32I | GATATC | 1 cut(s) | 754 |
| Eco47I | GGWCC | 3 cut(s) | 127, 185, 399 |
| Eco88I | CYCGRG | 1 cut(s) | 390 |
| EcoRV | GATATC | 1 cut(s) | 754 |
| EcoT14I | CCWWGG | 3 cut(s) | 85, 130, 326 |
| EcoT22I | ATGCAT | 1 cut(s) | 590 |
| ErhI | CCWWGG | 3 cut(s) | 85, 130, 326 |
| FaeI | CATG | 8 cut(s) | 117, 167, 318, 330, 464, 575, 655, 760 |
| FatI | CATG | 8 cut(s) | 113, 163, 314, 326, 460, 571, 651, 756 |
| Fnu4HI | GCNGC | 3 cut(s) | 287, 306, 410 |
| FokI | GGATG | 2 cut(s) | 111, 603 |
| Fsp4HI | GCNGC | 3 cut(s) | 287, 306, 410 |
| FspBI | CTAG | 5 cut(s) | 21, 47, 213, 261, 847 |
| FspI | TGCGCA | 3 cut(s) | 77, 309, 761 |
| GlaI | GCGC | 4 cut(s) | 77, 309, 536, 761 |
| GluI | GCNGC | 3 cut(s) | 287, 306, 410 |
| GsaI | CCCAGC | 1 cut(s) | 55 |
| GsuI | CTGGAG | 1 cut(s) | 759 |
| HhaI | GCGC | 4 cut(s) | 78, 310, 537, 762 |
| Hin1II | CATG | 8 cut(s) | 117, 167, 318, 330, 464, 575, 655, 760 |
| Hin6I | GCGC | 4 cut(s) | 76, 308, 535, 760 |
| HinP1I | GCGC | 4 cut(s) | 76, 308, 535, 760 |
| HinfI | GANTC | 2 cut(s) | 234, 482 |
| HphI | GGTGA | 2 cut(s) | 353, 683 |
| Hpy166II | GTNNAC | 1 cut(s) | 844 |
| Hpy188I | TCNGA | 4 cut(s) | 40, 233, 487, 729 |
| Hpy188III | TCNNGA | 9 cut(s) | 65, 96, 221, 378, 390, 446, 601, 737, 776 |
| Hpy8I | GTNNAC | 1 cut(s) | 844 |
| HpyCH4IV | ACGT | 1 cut(s) | 476 |
| HpyCH4V | TGCA | 3 cut(s) | 409, 588, 640 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 68 |
| HpyF3I | CTNAG | 4 cut(s) | 173, 219, 301, 815 |
| HpySE526I | ACGT | 1 cut(s) | 476 |
| Hsp92II | CATG | 8 cut(s) | 117, 167, 318, 330, 464, 575, 655, 760 |
| HspAI | GCGC | 4 cut(s) | 76, 308, 535, 760 |
| Kzo9I | GATC | 3 cut(s) | 157, 515, 676 |
| LguI | GCTCTTC | 1 cut(s) | 147 |
| LmnI | GCTCC | 1 cut(s) | 262 |
| LpnPI | CCDG | 9 cut(s) | 65, 69, 81, 206, 225, 612, 654, 789, 794 |
| Lsp1109I | GCAGC | 3 cut(s) | 292, 298, 421 |
| LweI | GCATC | 2 cut(s) | 87, 597 |
| MaeI | CTAG | 5 cut(s) | 21, 47, 213, 261, 847 |
| MaeII | ACGT | 1 cut(s) | 476 |
| MaeIII | GTNAC | 3 cut(s) | 341, 479, 575 |
| MalI | GATC | 3 cut(s) | 159, 517, 678 |
| MboI | GATC | 3 cut(s) | 157, 515, 676 |
| MboII | GAAGA | 5 cut(s) | 134, 485, 491, 572, 671 |
| MflI | RGATCY | 1 cut(s) | 515 |
| MhlI | GDGCHC | 1 cut(s) | 13 |
| MluCI | AATT | 7 cut(s) | 27, 135, 354, 521, 657, 723, 805 |
| MlyI | GAGTC | 1 cut(s) | 476 |
| MmeI | TCCRAC | 1 cut(s) | 486 |
| MnlI | CCTC | 3 cut(s) | 374, 507, 630 |
| Mph1103I | ATGCAT | 1 cut(s) | 590 |
| MseI | TTAA | 4 cut(s) | 348, 705, 746, 804 |
| Mva1269I | GAATGC | 2 cut(s) | 590, 642 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 68 |
| NcoI | CCATGG | 1 cut(s) | 326 |
| NdeII | GATC | 3 cut(s) | 157, 515, 676 |
| NlaIII | CATG | 8 cut(s) | 117, 167, 318, 330, 464, 575, 655, 760 |
| NlaIV | GGNNCC | 3 cut(s) | 128, 401, 551 |
| NmuCI | GTSAC | 3 cut(s) | 341, 479, 575 |
| NsbI | TGCGCA | 3 cut(s) | 77, 309, 761 |
| NsiI | ATGCAT | 1 cut(s) | 590 |
| NspI | RCATGY | 1 cut(s) | 655 |
| PaeI | GCATGC | 1 cut(s) | 655 |
| PaeR7I | CTCGAG | 1 cut(s) | 390 |
| PciSI | GCTCTTC | 1 cut(s) | 147 |
| PctI | GAATGC | 2 cut(s) | 590, 642 |
| PfeI | GAWTC | 1 cut(s) | 234 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 58 |
| PkrI | GCNGC | 3 cut(s) | 288, 307, 411 |
| PleI | GAGTC | 1 cut(s) | 476 |
| PpsI | GAGTC | 1 cut(s) | 476 |
| Ppu21I | YACGTR | 1 cut(s) | 477 |
| PspFI | CCCAGC | 1 cut(s) | 51 |
| PspN4I | GGNNCC | 3 cut(s) | 128, 401, 551 |
| PspPI | GGNCC | 3 cut(s) | 127, 185, 399 |
| PsuI | RGATCY | 1 cut(s) | 515 |
| RsaI | GTAC | 2 cut(s) | 280, 820 |
| RsaNI | GTAC | 2 cut(s) | 279, 819 |
| SapI | GCTCTTC | 1 cut(s) | 147 |
| SaqAI | TTAA | 4 cut(s) | 348, 705, 746, 804 |
| SatI | GCNGC | 3 cut(s) | 287, 306, 410 |
| Sau3AI | GATC | 3 cut(s) | 157, 515, 676 |
| Sau96I | GGNCC | 3 cut(s) | 127, 185, 399 |
| ScaI | AGTACT | 1 cut(s) | 820 |
| SchI | GAGTC | 1 cut(s) | 476 |
| SduI | GDGCHC | 1 cut(s) | 13 |
| SfaNI | GCATC | 2 cut(s) | 87, 597 |
| Sfr274I | CTCGAG | 1 cut(s) | 390 |
| SinI | GGWCC | 3 cut(s) | 127, 185, 399 |
| SlaI | CTCGAG | 1 cut(s) | 390 |
| SmlI | CTYRAG | 1 cut(s) | 390 |
| SmoI | CTYRAG | 1 cut(s) | 390 |
| SphI | GCATGC | 1 cut(s) | 655 |
| Sse9I | AATT | 7 cut(s) | 27, 135, 354, 521, 657, 723, 805 |
| SsiI | CCGC | 1 cut(s) | 547 |
| SspMI | CTAG | 5 cut(s) | 21, 47, 213, 261, 847 |
| StyI | CCWWGG | 3 cut(s) | 85, 130, 326 |
| TaiI | ACGT | 1 cut(s) | 479 |
| TaqI | TCGA | 2 cut(s) | 13, 391 |
| TasI | AATT | 7 cut(s) | 27, 135, 354, 521, 657, 723, 805 |
| TatI | WGTACW | 1 cut(s) | 818 |
| TfiI | GAWTC | 1 cut(s) | 234 |
| Tru1I | TTAA | 4 cut(s) | 348, 705, 746, 804 |
| Tru9I | TTAA | 4 cut(s) | 348, 705, 746, 804 |
| TscAI | CASTG | 3 cut(s) | 63, 78, 631 |
| TseFI | GTSAC | 3 cut(s) | 341, 479, 575 |
| TseI | GCWGC | 3 cut(s) | 286, 305, 409 |
| Tsp45I | GTSAC | 3 cut(s) | 341, 479, 575 |
| TspDTI | ATGAA | 5 cut(s) | 366, 449, 597, 735, 818 |
| TspGWI | ACGGA | 1 cut(s) | 542 |
| TspRI | CASTG | 3 cut(s) | 63, 78, 631 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 58 |
| VpaK11BI | GGWCC | 3 cut(s) | 127, 185, 399 |
| XapI | RAATTY | 2 cut(s) | 657, 723 |
| XceI | RCATGY | 1 cut(s) | 655 |
| XhoI | CTCGAG | 1 cut(s) | 390 |
| XspI | CTAG | 5 cut(s) | 21, 47, 213, 261, 847 |
| ZrmI | AGTACT | 1 cut(s) | 820 |
| Zsp2I | ATGCAT | 1 cut(s) | 590 |