ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Exo_endo_phos | PF03372 | 197 - 355 | 7.5e-07 | Endonuclease/Exonuclease/phosphatase family |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 109 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 76 |
| AccI | GTMKAC | 1 cut(s) | 136 |
| AccII | CGCG | 1 cut(s) | 1258 |
| AciI | CCGC | 3 cut(s) | 37, 1244, 1258 |
| AclWI | GGATC | 1 cut(s) | 1203 |
| AcoI | YGGCCR | 1 cut(s) | 1209 |
| AcsI | RAATTY | 2 cut(s) | 1034, 1229 |
| AfaI | GTAC | 6 cut(s) | 267, 319, 432, 460, 964, 1287 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 61, 76, 440, 473, 737, 757 |
| AflIII | ACRYGT | 2 cut(s) | 394, 547 |
| AgeI | ACCGGT | 2 cut(s) | 466, 868 |
| AgsI | TTSAA | 1 cut(s) | 892 |
| AjiI | CACGTC | 1 cut(s) | 395 |
| AjnI | CCWGG | 1 cut(s) | 950 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 914, 946 |
| AluBI | AGCT | 6 cut(s) | 305, 888, 1007, 1028, 1055, 1094 |
| AluI | AGCT | 6 cut(s) | 305, 888, 1007, 1028, 1055, 1094 |
| Alw21I | GWGCWC | 2 cut(s) | 509, 1030 |
| Alw26I | GTCTC | 4 cut(s) | 700, 739, 810, 877 |
| AlwI | GGATC | 1 cut(s) | 1203 |
| AlwNI | CAGNNNCTG | 3 cut(s) | 188, 415, 925 |
| AoxI | GGCC | 4 cut(s) | 195, 475, 937, 1209 |
| ApaI | GGGCCC | 1 cut(s) | 941 |
| ApeKI | GCWGC | 1 cut(s) | 572 |
| ApoI | RAATTY | 2 cut(s) | 1034, 1229 |
| AseI | ATTAAT | 1 cut(s) | 903 |
| AsiGI | ACCGGT | 2 cut(s) | 466, 868 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1397 |
| AspA2I | CCTAGG | 1 cut(s) | 1289 |
| AspLEI | GCGC | 1 cut(s) | 581 |
| AspS9I | GGNCC | 3 cut(s) | 67, 937, 938 |
| AsuC2I | CCSGG | 2 cut(s) | 731, 739 |
| AsuHPI | GGTGA | 5 cut(s) | 370, 658, 715, 940, 1181 |
| AvaII | GGWCC | 1 cut(s) | 67 |
| AvrII | CCTAGG | 1 cut(s) | 1289 |
| AxyI | CCTNAGG | 1 cut(s) | 435 |
| BaeGI | GKGCMC | 3 cut(s) | 56, 114, 941 |
| BalI | TGGCCA | 1 cut(s) | 1211 |
| BanI | GGYRCC | 1 cut(s) | 109 |
| BanII | GRGCYC | 3 cut(s) | 10, 941, 1030 |
| BbsI | GAAGAC | 1 cut(s) | 1091 |
| Bbv12I | GWGCWC | 2 cut(s) | 509, 1030 |
| BbvI | GCAGC | 1 cut(s) | 584 |
| BccI | CCATC | 3 cut(s) | 556, 673, 686 |
| BceAI | ACGGC | 1 cut(s) | 462 |
| BciT130I | CCWGG | 1 cut(s) | 952 |
| BciVI | GTATCC | 2 cut(s) | 622, 798 |
| BclI | TGATCA | 1 cut(s) | 1060 |
| BcnI | CCSGG | 2 cut(s) | 731, 739 |
| BcoDI | GTCTC | 4 cut(s) | 700, 739, 810, 877 |
| BfaI | CTAG | 2 cut(s) | 1056, 1290 |
| BfuI | GTATCC | 2 cut(s) | 622, 798 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 1208 |
| BisI | GCNGC | 1 cut(s) | 573 |
| BlnI | CCTAGG | 1 cut(s) | 1289 |
| BlsI | GCNGC | 1 cut(s) | 574 |
| BmcAI | AGTACT | 1 cut(s) | 460 |
| Bme1390I | CCNGG | 3 cut(s) | 731, 739, 952 |
| Bme18I | GGWCC | 1 cut(s) | 67 |
| BmgBI | CACGTC | 1 cut(s) | 395 |
| BmgT120I | GGNCC | 3 cut(s) | 67, 937, 938 |
| BmiI | GGNNCC | 3 cut(s) | 111, 939, 940 |
| BmrFI | CCNGG | 3 cut(s) | 731, 739, 952 |
| BmrI | ACTGGG | 2 cut(s) | 723, 775 |
| BmsI | GCATC | 3 cut(s) | 409, 643, 751 |
| BmuI | ACTGGG | 2 cut(s) | 723, 775 |
| BpiI | GAAGAC | 1 cut(s) | 1091 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 445, 477 |
| BpmI | CTGGAG | 3 cut(s) | 48, 947, 973 |
| Bpu10I | CCTNAGC | 1 cut(s) | 12 |
| BpuMI | CCSGG | 2 cut(s) | 731, 739 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1359 |
| BsaI | GGTCTC | 1 cut(s) | 877 |
| BsaJI | CCNNGG | 3 cut(s) | 738, 1203, 1289 |
| BsaWI | WCCGGW | 2 cut(s) | 466, 868 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 946, 976, 1238, 1268 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 61, 76, 440, 473, 737, 757 |
| Bse118I | RCCGGY | 2 cut(s) | 466, 868 |
| Bse1I | ACTGG | 6 cut(s) | 31, 269, 325, 718, 781, 930 |
| Bse21I | CCTNAGG | 1 cut(s) | 435 |
| Bse3DI | GCAATG | 1 cut(s) | 248 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1359 |
| BseBI | CCWGG | 1 cut(s) | 952 |
| BseDI | CCNNGG | 3 cut(s) | 738, 1203, 1289 |
| BseGI | GGATG | 5 cut(s) | 94, 108, 424, 433, 766 |
| BseJI | GATNNNNATC | 1 cut(s) | 1359 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 61, 76, 440, 473, 737, 757 |
| BseMI | GCAATG | 1 cut(s) | 248 |
| BseMII | CTCAG | 2 cut(s) | 153, 380 |
| BseNI | ACTGG | 6 cut(s) | 31, 269, 325, 718, 781, 930 |
| BseRI | GAGGAG | 4 cut(s) | 227, 456, 469, 1262 |
| BseSI | GKGCMC | 3 cut(s) | 56, 114, 941 |
| BseXI | GCAGC | 1 cut(s) | 584 |
| BsgI | GTGCAG | 3 cut(s) | 467, 591, 1361 |
| Bsh1236I | CGCG | 1 cut(s) | 1258 |
| BshFI | GGCC | 4 cut(s) | 197, 477, 939, 1211 |
| BshNI | GGYRCC | 1 cut(s) | 109 |
| BshTI | ACCGGT | 2 cut(s) | 466, 868 |
| BsiHKAI | GWGCWC | 2 cut(s) | 509, 1030 |
| BsiSI | CCGG | 4 cut(s) | 467, 731, 738, 869 |
| BslFI | GGGAC | 1 cut(s) | 763 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 61, 76, 440, 473, 737, 757 |
| BsmAI | GTCTC | 4 cut(s) | 700, 739, 810, 877 |
| BsmFI | GGGAC | 1 cut(s) | 763 |
| BsmI | GAATGC | 1 cut(s) | 374 |
| BsnI | GGCC | 4 cut(s) | 197, 477, 939, 1211 |
| Bso31I | GGTCTC | 1 cut(s) | 877 |
| Bsp120I | GGGCCC | 1 cut(s) | 937 |
| Bsp1286I | GDGCHC | 6 cut(s) | 10, 56, 114, 509, 941, 1030 |
| Bsp143I | GATC | 4 cut(s) | 299, 1060, 1195, 1354 |
| BspACI | CCGC | 3 cut(s) | 37, 1244, 1258 |
| BspANI | GGCC | 4 cut(s) | 197, 477, 939, 1211 |
| BspCNI | CTCAG | 3 cut(s) | 4, 154, 379 |
| BspFNI | CGCG | 1 cut(s) | 1258 |
| BspHI | TCATGA | 1 cut(s) | 993 |
| BspLI | GGNNCC | 3 cut(s) | 111, 939, 940 |
| BspPI | GGATC | 1 cut(s) | 1203 |
| BspT107I | GGYRCC | 1 cut(s) | 109 |
| BspTNI | GGTCTC | 1 cut(s) | 877 |
| BsrDI | GCAATG | 1 cut(s) | 248 |
| BsrFI | RCCGGY | 2 cut(s) | 466, 868 |
| BsrI | ACTGG | 6 cut(s) | 31, 269, 325, 718, 781, 930 |
| BssAI | RCCGGY | 2 cut(s) | 466, 868 |
| BssECI | CCNNGG | 3 cut(s) | 738, 1203, 1289 |
| BssMI | GATC | 4 cut(s) | 299, 1060, 1195, 1354 |
| BssT1I | CCWWGG | 1 cut(s) | 1289 |
| Bst2UI | CCWGG | 1 cut(s) | 952 |
| Bst4CI | ACNGT | 3 cut(s) | 190, 967, 1207 |
| Bst6I | CTCTTC | 2 cut(s) | 446, 837 |
| BstC8I | GCNNGC | 1 cut(s) | 577 |
| BstDEI | CTNAG | 6 cut(s) | 12, 162, 366, 435, 863, 1042 |
| BstDSI | CCRYGG | 1 cut(s) | 1203 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 438 |
| BstF5I | GGATG | 5 cut(s) | 94, 108, 424, 433, 766 |
| BstFNI | CGCG | 1 cut(s) | 1258 |
| BstHHI | GCGC | 1 cut(s) | 581 |
| BstKTI | GATC | 4 cut(s) | 302, 1063, 1198, 1357 |
| BstMAI | GTCTC | 4 cut(s) | 700, 739, 810, 877 |
| BstMBI | GATC | 4 cut(s) | 299, 1060, 1195, 1354 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 311, 483, 578, 1208 |
| BstNI | CCWGG | 1 cut(s) | 952 |
| BstNSI | RCATGY | 3 cut(s) | 318, 551, 1286 |
| BstSCI | CCNGG | 3 cut(s) | 729, 737, 950 |
| BstSLI | GKGCMC | 3 cut(s) | 56, 114, 941 |
| BstUI | CGCG | 1 cut(s) | 1258 |
| BstV1I | GCAGC | 1 cut(s) | 584 |
| BstV2I | GAAGAC | 1 cut(s) | 1091 |
| Bsu36I | CCTNAGG | 1 cut(s) | 435 |
| BsuI | GTATCC | 2 cut(s) | 622, 798 |
| BsuRI | GGCC | 4 cut(s) | 197, 477, 939, 1211 |
| BtgI | CCRYGG | 1 cut(s) | 1203 |
| BtrI | CACGTC | 1 cut(s) | 395 |
| BtsCI | GGATG | 5 cut(s) | 94, 108, 424, 433, 766 |
| Cac8I | GCNNGC | 1 cut(s) | 577 |
| CaiI | CAGNNNCTG | 3 cut(s) | 188, 415, 925 |
| CciI | TCATGA | 1 cut(s) | 993 |
| CfoI | GCGC | 1 cut(s) | 581 |
| Cfr10I | RCCGGY | 2 cut(s) | 466, 868 |
| Cfr13I | GGNCC | 3 cut(s) | 67, 937, 938 |
| Csp6I | GTAC | 6 cut(s) | 266, 318, 431, 459, 963, 1286 |
| CspAI | ACCGGT | 2 cut(s) | 466, 868 |
| CviAII | CATG | 7 cut(s) | 315, 548, 794, 801, 943, 994, 1283 |
| CviQI | GTAC | 6 cut(s) | 266, 318, 431, 459, 963, 1286 |
| DdeI | CTNAG | 6 cut(s) | 12, 162, 366, 435, 863, 1042 |
| DpnI | GATC | 4 cut(s) | 301, 1062, 1197, 1356 |
| DpnII | GATC | 4 cut(s) | 299, 1060, 1195, 1354 |
| EaeI | YGGCCR | 1 cut(s) | 1209 |
| Eam1104I | CTCTTC | 2 cut(s) | 446, 837 |
| EarI | CTCTTC | 2 cut(s) | 446, 837 |
| Ecl136II | GAGCTC | 1 cut(s) | 1028 |
| Eco130I | CCWWGG | 1 cut(s) | 1289 |
| Eco24I | GRGCYC | 3 cut(s) | 10, 941, 1030 |
| Eco31I | GGTCTC | 1 cut(s) | 877 |
| Eco47I | GGWCC | 1 cut(s) | 67 |
| Eco53kI | GAGCTC | 1 cut(s) | 1028 |
| Eco81I | CCTNAGG | 1 cut(s) | 435 |
| EcoICRI | GAGCTC | 1 cut(s) | 1028 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 438 |
| EcoO109I | RGGNCCY | 1 cut(s) | 938 |
| EcoRII | CCWGG | 1 cut(s) | 950 |
| EcoT14I | CCWWGG | 1 cut(s) | 1289 |
| EcoT38I | GRGCYC | 3 cut(s) | 10, 941, 1030 |
| ErhI | CCWWGG | 1 cut(s) | 1289 |
| FaeI | CATG | 7 cut(s) | 318, 551, 797, 804, 946, 997, 1286 |
| FaqI | GGGAC | 1 cut(s) | 763 |
| FatI | CATG | 7 cut(s) | 314, 547, 793, 800, 942, 993, 1282 |
| FauI | CCCGC | 1 cut(s) | 30 |
| FbaI | TGATCA | 1 cut(s) | 1060 |
| FblI | GTMKAC | 1 cut(s) | 136 |
| Fnu4HI | GCNGC | 1 cut(s) | 573 |
| FokI | GGATG | 5 cut(s) | 101, 115, 431, 440, 773 |
| FriOI | GRGCYC | 3 cut(s) | 10, 941, 1030 |
| Fsp4HI | GCNGC | 1 cut(s) | 573 |
| FspBI | CTAG | 2 cut(s) | 1056, 1290 |
| GlaI | GCGC | 1 cut(s) | 580 |
| GluI | GCNGC | 1 cut(s) | 573 |
| GsuI | CTGGAG | 3 cut(s) | 48, 947, 973 |
| HaeIII | GGCC | 4 cut(s) | 197, 477, 939, 1211 |
| HapII | CCGG | 4 cut(s) | 467, 731, 738, 869 |
| HhaI | GCGC | 1 cut(s) | 581 |
| Hin1II | CATG | 7 cut(s) | 318, 551, 797, 804, 946, 997, 1286 |
| Hin6I | GCGC | 1 cut(s) | 579 |
| HinP1I | GCGC | 1 cut(s) | 579 |
| HincII | GTYRAC | 2 cut(s) | 137, 235 |
| HindII | GTYRAC | 2 cut(s) | 137, 235 |
| HindIII | AAGCTT | 1 cut(s) | 1005 |
| HinfI | GANTC | 3 cut(s) | 179, 245, 412 |
| HpaII | CCGG | 4 cut(s) | 467, 731, 738, 869 |
| HphI | GGTGA | 5 cut(s) | 370, 658, 715, 940, 1181 |
| Hpy166II | GTNNAC | 5 cut(s) | 137, 235, 933, 948, 1411 |
| Hpy188I | TCNGA | 2 cut(s) | 178, 184 |
| Hpy188III | TCNNGA | 4 cut(s) | 416, 994, 1031, 1138 |
| Hpy8I | GTNNAC | 5 cut(s) | 137, 235, 933, 948, 1411 |
| Hpy99I | CGWCG | 2 cut(s) | 138, 1128 |
| HpyAV | CCTTC | 4 cut(s) | 79, 619, 637, 1174 |
| HpyCH4III | ACNGT | 3 cut(s) | 190, 967, 1207 |
| HpyCH4IV | ACGT | 3 cut(s) | 133, 394, 1126 |
| HpyCH4V | TGCA | 9 cut(s) | 253, 374, 422, 448, 572, 656, 764, 800, 1342 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 311, 483, 578, 1208 |
| HpyF3I | CTNAG | 6 cut(s) | 12, 162, 366, 435, 863, 1042 |
| HpySE526I | ACGT | 3 cut(s) | 133, 394, 1126 |
| Hsp92II | CATG | 7 cut(s) | 318, 551, 797, 804, 946, 997, 1286 |
| HspAI | GCGC | 1 cut(s) | 579 |
| Ksp22I | TGATCA | 1 cut(s) | 1060 |
| Kzo9I | GATC | 4 cut(s) | 299, 1060, 1195, 1354 |
| LmnI | GCTCC | 7 cut(s) | 40, 148, 214, 339, 512, 1052, 1091 |
| Lsp1109I | GCAGC | 1 cut(s) | 584 |
| LweI | GCATC | 3 cut(s) | 409, 643, 751 |
| MaeI | CTAG | 2 cut(s) | 1056, 1290 |
| MaeII | ACGT | 3 cut(s) | 133, 394, 1126 |
| MaeIII | GTNAC | 2 cut(s) | 271, 1346 |
| MalI | GATC | 4 cut(s) | 301, 1062, 1197, 1356 |
| MboI | GATC | 4 cut(s) | 299, 1060, 1195, 1354 |
| MboII | GAAGA | 8 cut(s) | 463, 532, 565, 568, 571, 854, 1091, 1169 |
| MfeI | CAATTG | 1 cut(s) | 1332 |
| MhlI | GDGCHC | 6 cut(s) | 10, 56, 114, 509, 941, 1030 |
| MlsI | TGGCCA | 1 cut(s) | 1211 |
| MluCI | AATT | 9 cut(s) | 142, 307, 687, 1034, 1173, 1229, 1275, 1296, 1332 |
| MluNI | TGGCCA | 1 cut(s) | 1211 |
| MmeI | TCCRAC | 3 cut(s) | 563, 819, 1030 |
| Mox20I | TGGCCA | 1 cut(s) | 1211 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1397 |
| MscI | TGGCCA | 1 cut(s) | 1211 |
| MseI | TTAA | 9 cut(s) | 170, 261, 686, 822, 903, 969, 1152, 1233, 1417 |
| MslI | CAYNNNNRTG | 2 cut(s) | 674, 769 |
| Msp20I | TGGCCA | 1 cut(s) | 1211 |
| MspI | CCGG | 4 cut(s) | 467, 731, 738, 869 |
| MspR9I | CCNGG | 3 cut(s) | 731, 739, 952 |
| MunI | CAATTG | 1 cut(s) | 1332 |
| Mva1269I | GAATGC | 1 cut(s) | 374 |
| MvaI | CCWGG | 1 cut(s) | 952 |
| MvnI | CGCG | 1 cut(s) | 1258 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 311, 483, 578, 1208 |
| NciI | CCSGG | 2 cut(s) | 731, 739 |
| NdeII | GATC | 4 cut(s) | 299, 1060, 1195, 1354 |
| NlaIII | CATG | 7 cut(s) | 318, 551, 797, 804, 946, 997, 1286 |
| NlaIV | GGNNCC | 3 cut(s) | 111, 939, 940 |
| NmuCI | GTSAC | 1 cut(s) | 1346 |
| NspI | RCATGY | 3 cut(s) | 318, 551, 1286 |
| PagI | TCATGA | 1 cut(s) | 993 |
| PciI | ACATGT | 1 cut(s) | 547 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 1363 |
| PctI | GAATGC | 1 cut(s) | 374 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1397 |
| PfeI | GAWTC | 3 cut(s) | 179, 245, 412 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 76 |
| PinAI | ACCGGT | 2 cut(s) | 466, 868 |
| PkrI | GCNGC | 1 cut(s) | 574 |
| PscI | ACATGT | 1 cut(s) | 547 |
| PshBI | ATTAAT | 1 cut(s) | 903 |
| Psp124BI | GAGCTC | 1 cut(s) | 1030 |
| Psp6I | CCWGG | 1 cut(s) | 950 |
| PspGI | CCWGG | 1 cut(s) | 950 |
| PspN4I | GGNNCC | 3 cut(s) | 111, 939, 940 |
| PspOMI | GGGCCC | 1 cut(s) | 937 |
| PspPI | GGNCC | 3 cut(s) | 67, 937, 938 |
| PstNI | CAGNNNCTG | 3 cut(s) | 188, 415, 925 |
| RsaI | GTAC | 6 cut(s) | 267, 319, 432, 460, 964, 1287 |
| RsaNI | GTAC | 6 cut(s) | 266, 318, 431, 459, 963, 1286 |
| RseI | CAYNNNNRTG | 2 cut(s) | 674, 769 |
| SacI | GAGCTC | 1 cut(s) | 1030 |
| SalI | GTCGAC | 1 cut(s) | 135 |
| SaqAI | TTAA | 9 cut(s) | 170, 261, 686, 822, 903, 969, 1152, 1233, 1417 |
| SatI | GCNGC | 1 cut(s) | 573 |
| Sau3AI | GATC | 4 cut(s) | 299, 1060, 1195, 1354 |
| Sau96I | GGNCC | 3 cut(s) | 67, 937, 938 |
| ScaI | AGTACT | 1 cut(s) | 460 |
| ScrFI | CCNGG | 3 cut(s) | 731, 739, 952 |
| SduI | GDGCHC | 6 cut(s) | 10, 56, 114, 509, 941, 1030 |
| SfaNI | GCATC | 3 cut(s) | 409, 643, 751 |
| SinI | GGWCC | 1 cut(s) | 67 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 674, 769 |
| Sse9I | AATT | 9 cut(s) | 142, 307, 687, 1034, 1173, 1229, 1275, 1296, 1332 |
| SsiI | CCGC | 3 cut(s) | 37, 1244, 1258 |
| SspMI | CTAG | 2 cut(s) | 1056, 1290 |
| SstI | GAGCTC | 1 cut(s) | 1030 |
| StyD4I | CCNGG | 3 cut(s) | 729, 737, 950 |
| StyI | CCWWGG | 1 cut(s) | 1289 |
| TaaI | ACNGT | 3 cut(s) | 190, 967, 1207 |
| TaiI | ACGT | 3 cut(s) | 136, 397, 1129 |
| TaqI | TCGA | 3 cut(s) | 136, 1137, 1357 |
| TasI | AATT | 9 cut(s) | 142, 307, 687, 1034, 1173, 1229, 1275, 1296, 1332 |
| TatI | WGTACW | 2 cut(s) | 317, 458 |
| TfiI | GAWTC | 3 cut(s) | 179, 245, 412 |
| Tru1I | TTAA | 9 cut(s) | 170, 261, 686, 822, 903, 969, 1152, 1233, 1417 |
| Tru9I | TTAA | 9 cut(s) | 170, 261, 686, 822, 903, 969, 1152, 1233, 1417 |
| TseFI | GTSAC | 1 cut(s) | 1346 |
| TseI | GCWGC | 1 cut(s) | 572 |
| Tsp45I | GTSAC | 1 cut(s) | 1346 |
| TspDTI | ATGAA | 7 cut(s) | 237, 658, 982, 987, 1010, 1017, 1390 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 76 |
| VpaK11BI | GGWCC | 1 cut(s) | 67 |
| VspI | ATTAAT | 1 cut(s) | 903 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 438 |
| XapI | RAATTY | 2 cut(s) | 1034, 1229 |
| XceI | RCATGY | 3 cut(s) | 318, 551, 1286 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1219 |
| XmaJI | CCTAGG | 1 cut(s) | 1289 |
| XmiI | GTMKAC | 1 cut(s) | 136 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1397 |
| XspI | CTAG | 2 cut(s) | 1056, 1290 |
| ZrmI | AGTACT | 1 cut(s) | 460 |