ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 1 cut(s) | 210 |
| AciI | CCGC | 2 cut(s) | 17, 179 |
| AclWI | GGATC | 3 cut(s) | 76, 438, 647 |
| AfaI | GTAC | 1 cut(s) | 108 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 116 |
| AgsI | TTSAA | 2 cut(s) | 392, 404 |
| AjnI | CCWGG | 1 cut(s) | 446 |
| AluBI | AGCT | 2 cut(s) | 365, 610 |
| AluI | AGCT | 2 cut(s) | 365, 610 |
| Alw26I | GTCTC | 2 cut(s) | 40, 618 |
| AlwI | GGATC | 3 cut(s) | 76, 438, 647 |
| ApeKI | GCWGC | 3 cut(s) | 548, 572, 602 |
| ArsI | GACNNNNNNTTYG | 1 cut(s) | 28 |
| AspS9I | GGNCC | 2 cut(s) | 4, 184 |
| AsuC2I | CCSGG | 1 cut(s) | 167 |
| AsuHPI | GGTGA | 4 cut(s) | 155, 227, 386, 574 |
| AsuII | TTCGAA | 1 cut(s) | 322 |
| AvaII | GGWCC | 2 cut(s) | 4, 184 |
| BbvI | GCAGC | 3 cut(s) | 559, 560, 589 |
| BccI | CCATC | 2 cut(s) | 196, 267 |
| BceAI | ACGGC | 1 cut(s) | 498 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 506, 540 |
| BciT130I | CCWGG | 1 cut(s) | 448 |
| BciVI | GTATCC | 1 cut(s) | 429 |
| BclI | TGATCA | 1 cut(s) | 367 |
| BcnI | CCSGG | 1 cut(s) | 167 |
| BcoDI | GTCTC | 2 cut(s) | 40, 618 |
| BfaI | CTAG | 1 cut(s) | 332 |
| BfmI | CTRYAG | 1 cut(s) | 639 |
| BfuI | GTATCC | 1 cut(s) | 429 |
| BisI | GCNGC | 3 cut(s) | 549, 573, 603 |
| BlsI | GCNGC | 3 cut(s) | 550, 574, 604 |
| Bme1390I | CCNGG | 2 cut(s) | 167, 448 |
| Bme18I | GGWCC | 2 cut(s) | 4, 184 |
| BmgT120I | GGNCC | 2 cut(s) | 4, 184 |
| BmrFI | CCNGG | 2 cut(s) | 167, 448 |
| BmsI | GCATC | 3 cut(s) | 512, 535, 559 |
| Bpu14I | TTCGAA | 1 cut(s) | 322 |
| BpuMI | CCSGG | 1 cut(s) | 167 |
| BsaAI | YACGTR | 1 cut(s) | 347 |
| BsaBI | GATNNNNATC | 1 cut(s) | 651 |
| BsaJI | CCNNGG | 2 cut(s) | 7, 447 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 116 |
| Bse118I | RCCGGY | 1 cut(s) | 575 |
| Bse1I | ACTGG | 1 cut(s) | 139 |
| Bse3DI | GCAATG | 1 cut(s) | 77 |
| Bse8I | GATNNNNATC | 1 cut(s) | 651 |
| BseBI | CCWGG | 1 cut(s) | 448 |
| BseDI | CCNNGG | 2 cut(s) | 7, 447 |
| BseGI | GGATG | 2 cut(s) | 278, 503 |
| BseJI | GATNNNNATC | 1 cut(s) | 651 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 116 |
| BseMI | GCAATG | 1 cut(s) | 77 |
| BseMII | CTCAG | 2 cut(s) | 125, 611 |
| BseNI | ACTGG | 1 cut(s) | 139 |
| BseXI | GCAGC | 3 cut(s) | 559, 560, 589 |
| BseYI | CCCAGC | 1 cut(s) | 606 |
| BsiSI | CCGG | 2 cut(s) | 167, 576 |
| BslFI | GGGAC | 1 cut(s) | 34 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 116 |
| BsmAI | GTCTC | 2 cut(s) | 40, 618 |
| BsmBI | CGTCTC | 1 cut(s) | 40 |
| BsmFI | GGGAC | 1 cut(s) | 34 |
| BsmI | GAATGC | 1 cut(s) | 619 |
| Bsp119I | TTCGAA | 1 cut(s) | 322 |
| Bsp143I | GATC | 5 cut(s) | 68, 367, 443, 646, 652 |
| BspACI | CCGC | 2 cut(s) | 17, 179 |
| BspCNI | CTCAG | 2 cut(s) | 124, 610 |
| BspHI | TCATGA | 1 cut(s) | 649 |
| BspMAI | CTGCAG | 1 cut(s) | 643 |
| BspPI | GGATC | 3 cut(s) | 76, 438, 647 |
| BspQI | GCTCTTC | 1 cut(s) | 493 |
| BspT104I | TTCGAA | 1 cut(s) | 322 |
| BsrDI | GCAATG | 1 cut(s) | 77 |
| BsrFI | RCCGGY | 1 cut(s) | 575 |
| BsrI | ACTGG | 1 cut(s) | 139 |
| BssAI | RCCGGY | 1 cut(s) | 575 |
| BssECI | CCNNGG | 2 cut(s) | 7, 447 |
| BssMI | GATC | 5 cut(s) | 68, 367, 443, 646, 652 |
| Bst2UI | CCWGG | 1 cut(s) | 448 |
| Bst4CI | ACNGT | 5 cut(s) | 8, 25, 75, 215, 430 |
| Bst6I | CTCTTC | 3 cut(s) | 253, 393, 493 |
| BstBAI | YACGTR | 1 cut(s) | 347 |
| BstBI | TTCGAA | 1 cut(s) | 322 |
| BstDEI | CTNAG | 2 cut(s) | 111, 597 |
| BstDSI | CCRYGG | 1 cut(s) | 7 |
| BstEII | GGTNACC | 1 cut(s) | 215 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 114 |
| BstF5I | GGATG | 2 cut(s) | 278, 503 |
| BstKTI | GATC | 5 cut(s) | 71, 370, 446, 649, 655 |
| BstMAI | GTCTC | 2 cut(s) | 40, 618 |
| BstMBI | GATC | 5 cut(s) | 68, 367, 443, 646, 652 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 616 |
| BstNI | CCWGG | 1 cut(s) | 448 |
| BstPI | GGTNACC | 1 cut(s) | 215 |
| BstSCI | CCNGG | 2 cut(s) | 165, 446 |
| BstSFI | CTRYAG | 1 cut(s) | 639 |
| BstSNI | TACGTA | 1 cut(s) | 347 |
| BstV1I | GCAGC | 3 cut(s) | 559, 560, 589 |
| BstX2I | RGATCY | 1 cut(s) | 443 |
| BstYI | RGATCY | 1 cut(s) | 443 |
| BsuI | GTATCC | 1 cut(s) | 429 |
| BtgI | CCRYGG | 1 cut(s) | 7 |
| BtsCI | GGATG | 2 cut(s) | 278, 503 |
| BtsIMutI | CAGTG | 1 cut(s) | 435 |
| CciI | TCATGA | 1 cut(s) | 649 |
| Cfr10I | RCCGGY | 1 cut(s) | 575 |
| Cfr13I | GGNCC | 2 cut(s) | 4, 184 |
| Csp6I | GTAC | 1 cut(s) | 107 |
| CviAII | CATG | 3 cut(s) | 292, 371, 650 |
| CviJI | RGCY | 4 cut(s) | 365, 460, 602, 610 |
| CviKI_1 | RGCY | 4 cut(s) | 365, 460, 602, 610 |
| CviQI | GTAC | 1 cut(s) | 107 |
| DdeI | CTNAG | 2 cut(s) | 111, 597 |
| DpnI | GATC | 5 cut(s) | 70, 369, 445, 648, 654 |
| DpnII | GATC | 5 cut(s) | 68, 367, 443, 646, 652 |
| Eam1104I | CTCTTC | 3 cut(s) | 253, 393, 493 |
| EarI | CTCTTC | 3 cut(s) | 253, 393, 493 |
| Eco105I | TACGTA | 1 cut(s) | 347 |
| Eco47I | GGWCC | 2 cut(s) | 4, 184 |
| Eco91I | GGTNACC | 1 cut(s) | 215 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 114 |
| EcoO65I | GGTNACC | 1 cut(s) | 215 |
| EcoRII | CCWGG | 1 cut(s) | 446 |
| Esp3I | CGTCTC | 1 cut(s) | 40 |
| FaeI | CATG | 3 cut(s) | 295, 374, 653 |
| FaiI | YATR | 7 cut(s) | 224, 252, 293, 357, 372, 416, 651 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 33, 65, 396, 428 |
| FaqI | GGGAC | 1 cut(s) | 34 |
| FatI | CATG | 3 cut(s) | 291, 370, 649 |
| FauI | CCCGC | 1 cut(s) | 10 |
| FbaI | TGATCA | 1 cut(s) | 367 |
| FblI | GTMKAC | 1 cut(s) | 210 |
| Fnu4HI | GCNGC | 3 cut(s) | 549, 573, 603 |
| FokI | GGATG | 2 cut(s) | 285, 490 |
| Fsp4HI | GCNGC | 3 cut(s) | 549, 573, 603 |
| FspBI | CTAG | 1 cut(s) | 332 |
| GluI | GCNGC | 3 cut(s) | 549, 573, 603 |
| GsaI | CCCAGC | 1 cut(s) | 610 |
| HapII | CCGG | 2 cut(s) | 167, 576 |
| Hin1II | CATG | 3 cut(s) | 295, 374, 653 |
| HincII | GTYRAC | 2 cut(s) | 239, 267 |
| HindII | GTYRAC | 2 cut(s) | 239, 267 |
| HinfI | GANTC | 5 cut(s) | 44, 100, 135, 529, 628 |
| HpaII | CCGG | 2 cut(s) | 167, 576 |
| HphI | GGTGA | 4 cut(s) | 155, 227, 386, 574 |
| Hpy166II | GTNNAC | 4 cut(s) | 211, 239, 267, 350 |
| Hpy188I | TCNGA | 2 cut(s) | 68, 528 |
| Hpy188III | TCNNGA | 4 cut(s) | 132, 332, 404, 650 |
| Hpy8I | GTNNAC | 4 cut(s) | 211, 239, 267, 350 |
| HpyAV | CCTTC | 1 cut(s) | 412 |
| HpyCH4III | ACNGT | 5 cut(s) | 8, 25, 75, 215, 430 |
| HpyCH4IV | ACGT | 4 cut(s) | 190, 241, 346, 520 |
| HpyCH4V | TGCA | 4 cut(s) | 548, 619, 634, 641 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 616 |
| HpyF3I | CTNAG | 2 cut(s) | 111, 597 |
| HpySE526I | ACGT | 4 cut(s) | 190, 241, 346, 520 |
| Hsp92II | CATG | 3 cut(s) | 295, 374, 653 |
| Ksp22I | TGATCA | 1 cut(s) | 367 |
| Kzo9I | GATC | 5 cut(s) | 68, 367, 443, 646, 652 |
| LguI | GCTCTTC | 1 cut(s) | 493 |
| Lsp1109I | GCAGC | 3 cut(s) | 559, 560, 589 |
| LweI | GCATC | 3 cut(s) | 512, 535, 559 |
| MaeI | CTAG | 1 cut(s) | 332 |
| MaeII | ACGT | 4 cut(s) | 190, 241, 346, 520 |
| MaeIII | GTNAC | 2 cut(s) | 215, 592 |
| MalI | GATC | 5 cut(s) | 70, 369, 445, 648, 654 |
| MboI | GATC | 5 cut(s) | 68, 367, 443, 646, 652 |
| MboII | GAAGA | 5 cut(s) | 55, 270, 380, 434, 510 |
| MflI | RGATCY | 1 cut(s) | 443 |
| MluCI | AATT | 1 cut(s) | 149 |
| MlyI | GAGTC | 1 cut(s) | 38 |
| MmeI | TCCRAC | 1 cut(s) | 211 |
| MnlI | CCTC | 3 cut(s) | 41, 117, 120 |
| MspA1I | CMGCKG | 2 cut(s) | 365, 610 |
| MspI | CCGG | 2 cut(s) | 167, 576 |
| MspR9I | CCNGG | 2 cut(s) | 167, 448 |
| Mva1269I | GAATGC | 1 cut(s) | 619 |
| MvaI | CCWGG | 1 cut(s) | 448 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 616 |
| NciI | CCSGG | 1 cut(s) | 167 |
| NdeII | GATC | 5 cut(s) | 68, 367, 443, 646, 652 |
| NlaIII | CATG | 3 cut(s) | 295, 374, 653 |
| NmuCI | GTSAC | 2 cut(s) | 215, 592 |
| NspV | TTCGAA | 1 cut(s) | 322 |
| PagI | TCATGA | 1 cut(s) | 649 |
| PciSI | GCTCTTC | 1 cut(s) | 493 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 517 |
| PctI | GAATGC | 1 cut(s) | 619 |
| PfeI | GAWTC | 4 cut(s) | 100, 135, 529, 628 |
| PkrI | GCNGC | 3 cut(s) | 550, 574, 604 |
| PleI | GAGTC | 1 cut(s) | 38 |
| PpsI | GAGTC | 1 cut(s) | 38 |
| Ppu21I | YACGTR | 1 cut(s) | 347 |
| Psp6I | CCWGG | 1 cut(s) | 446 |
| PspEI | GGTNACC | 1 cut(s) | 215 |
| PspFI | CCCAGC | 1 cut(s) | 606 |
| PspGI | CCWGG | 1 cut(s) | 446 |
| PspPI | GGNCC | 2 cut(s) | 4, 184 |
| PstI | CTGCAG | 1 cut(s) | 643 |
| PsuI | RGATCY | 1 cut(s) | 443 |
| PvuII | CAGCTG | 2 cut(s) | 365, 610 |
| RsaI | GTAC | 1 cut(s) | 108 |
| RsaNI | GTAC | 1 cut(s) | 107 |
| SapI | GCTCTTC | 1 cut(s) | 493 |
| SatI | GCNGC | 3 cut(s) | 549, 573, 603 |
| Sau3AI | GATC | 5 cut(s) | 68, 367, 443, 646, 652 |
| Sau96I | GGNCC | 2 cut(s) | 4, 184 |
| SchI | GAGTC | 1 cut(s) | 38 |
| ScrFI | CCNGG | 2 cut(s) | 167, 448 |
| SetI | ASST | 8 cut(s) | 112, 193, 244, 349, 367, 401, 523, 612 |
| SfaNI | GCATC | 3 cut(s) | 512, 535, 559 |
| SfcI | CTRYAG | 1 cut(s) | 639 |
| SfuI | TTCGAA | 1 cut(s) | 322 |
| SinI | GGWCC | 2 cut(s) | 4, 184 |
| SnaBI | TACGTA | 1 cut(s) | 347 |
| Sse9I | AATT | 1 cut(s) | 149 |
| SsiI | CCGC | 2 cut(s) | 17, 179 |
| SspMI | CTAG | 1 cut(s) | 332 |
| StyD4I | CCNGG | 2 cut(s) | 165, 446 |
| TaaI | ACNGT | 5 cut(s) | 8, 25, 75, 215, 430 |
| TaiI | ACGT | 4 cut(s) | 193, 244, 349, 523 |
| TaqI | TCGA | 3 cut(s) | 322, 492, 511 |
| TasI | AATT | 1 cut(s) | 149 |
| TfiI | GAWTC | 4 cut(s) | 100, 135, 529, 628 |
| TscAI | CASTG | 1 cut(s) | 435 |
| TseFI | GTSAC | 2 cut(s) | 215, 592 |
| TseI | GCWGC | 3 cut(s) | 548, 572, 602 |
| Tsp45I | GTSAC | 2 cut(s) | 215, 592 |
| TspDTI | ATGAA | 2 cut(s) | 280, 431 |
| TspRI | CASTG | 1 cut(s) | 435 |
| VpaK11BI | GGWCC | 2 cut(s) | 4, 184 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 114 |
| XbaI | TCTAGA | 1 cut(s) | 331 |
| XmiI | GTMKAC | 1 cut(s) | 210 |
| XspI | CTAG | 1 cut(s) | 332 |