Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 368 |
| AccII | CGCG | 1 cut(s) | 458 |
| AcsI | RAATTY | 3 cut(s) | 80, 155, 247 |
| AcvI | CACGTG | 1 cut(s) | 144 |
| AdeI | CACNNNGTG | 1 cut(s) | 50 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 328 |
| AflII | CTTAAG | 1 cut(s) | 446 |
| AgsI | TTSAA | 2 cut(s) | 16, 409 |
| AleI | CACNNNNGTG | 1 cut(s) | 95 |
| AluBI | AGCT | 4 cut(s) | 35, 287, 389, 445 |
| AluI | AGCT | 4 cut(s) | 35, 287, 389, 445 |
| Alw21I | GWGCWC | 1 cut(s) | 424 |
| ApeKI | GCWGC | 4 cut(s) | 62, 87, 284, 442 |
| ApoI | RAATTY | 3 cut(s) | 80, 155, 247 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 107, 139 |
| AspLEI | GCGC | 2 cut(s) | 458, 460 |
| AspS9I | GGNCC | 1 cut(s) | 308 |
| AvaII | GGWCC | 1 cut(s) | 308 |
| BauI | CACGAG | 1 cut(s) | 57 |
| BbrPI | CACGTG | 1 cut(s) | 144 |
| Bbv12I | GWGCWC | 1 cut(s) | 424 |
| BbvI | GCAGC | 4 cut(s) | 49, 99, 296, 454 |
| BccI | CCATC | 1 cut(s) | 250 |
| BclI | TGATCA | 1 cut(s) | 253 |
| BfmI | CTRYAG | 1 cut(s) | 133 |
| BfrI | CTTAAG | 1 cut(s) | 446 |
| BisI | GCNGC | 4 cut(s) | 63, 88, 285, 443 |
| BlsI | GCNGC | 4 cut(s) | 64, 89, 286, 444 |
| Bme18I | GGWCC | 1 cut(s) | 308 |
| BmgT120I | GGNCC | 1 cut(s) | 308 |
| BmsI | GCATC | 1 cut(s) | 429 |
| BpmI | CTGGAG | 1 cut(s) | 27 |
| BpuEI | CTTGAG | 1 cut(s) | 15 |
| BsaAI | YACGTR | 1 cut(s) | 144 |
| BsaBI | GATNNNNATC | 1 cut(s) | 258 |
| BsaJI | CCNNGG | 2 cut(s) | 93, 311 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 223, 253, 323, 353 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 328 |
| Bse8I | GATNNNNATC | 1 cut(s) | 258 |
| BseDI | CCNNGG | 2 cut(s) | 93, 311 |
| BseGI | GGATG | 1 cut(s) | 321 |
| BseJI | GATNNNNATC | 1 cut(s) | 258 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 328 |
| BseMII | CTCAG | 1 cut(s) | 351 |
| BsePI | GCGCGC | 1 cut(s) | 456 |
| BseRI | GAGGAG | 1 cut(s) | 344 |
| BseXI | GCAGC | 4 cut(s) | 49, 99, 296, 454 |
| Bsh1236I | CGCG | 1 cut(s) | 458 |
| BsiHKAI | GWGCWC | 1 cut(s) | 424 |
| BslFI | GGGAC | 1 cut(s) | 38 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 328 |
| BsmFI | GGGAC | 1 cut(s) | 38 |
| Bsp1286I | GDGCHC | 1 cut(s) | 424 |
| Bsp143I | GATC | 2 cut(s) | 175, 253 |
| Bsp19I | CCATGG | 1 cut(s) | 93 |
| BspCNI | CTCAG | 1 cut(s) | 352 |
| BspFNI | CGCG | 1 cut(s) | 458 |
| BspTI | CTTAAG | 1 cut(s) | 446 |
| BssECI | CCNNGG | 2 cut(s) | 93, 311 |
| BssHII | GCGCGC | 1 cut(s) | 456 |
| BssMI | GATC | 2 cut(s) | 175, 253 |
| BssSI | CACGAG | 1 cut(s) | 57 |
| BssT1I | CCWWGG | 2 cut(s) | 93, 311 |
| Bst2BI | CACGAG | 1 cut(s) | 57 |
| Bst4CI | ACNGT | 1 cut(s) | 436 |
| BstAFI | CTTAAG | 1 cut(s) | 446 |
| BstBAI | YACGTR | 1 cut(s) | 144 |
| BstC8I | GCNNGC | 1 cut(s) | 458 |
| BstDEI | CTNAG | 1 cut(s) | 360 |
| BstDSI | CCRYGG | 1 cut(s) | 93 |
| BstF5I | GGATG | 1 cut(s) | 321 |
| BstFNI | CGCG | 1 cut(s) | 458 |
| BstHHI | GCGC | 2 cut(s) | 458, 460 |
| BstKTI | GATC | 2 cut(s) | 178, 256 |
| BstMBI | GATC | 2 cut(s) | 175, 253 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 68 |
| BstSFI | CTRYAG | 1 cut(s) | 133 |
| BstUI | CGCG | 1 cut(s) | 458 |
| BstV1I | GCAGC | 4 cut(s) | 49, 99, 296, 454 |
| BtgI | CCRYGG | 1 cut(s) | 93 |
| BtsCI | GGATG | 1 cut(s) | 321 |
| BtsIMutI | CAGTG | 2 cut(s) | 357, 441 |
| Cac8I | GCNNGC | 1 cut(s) | 458 |
| CfoI | GCGC | 2 cut(s) | 458, 460 |
| Cfr13I | GGNCC | 1 cut(s) | 308 |
| CviAII | CATG | 5 cut(s) | 73, 94, 118, 179, 416 |
| CviJI | RGCY | 7 cut(s) | 5, 35, 132, 183, 287, 389, 445 |
| CviKI_1 | RGCY | 7 cut(s) | 5, 35, 132, 183, 287, 389, 445 |
| DdeI | CTNAG | 1 cut(s) | 360 |
| DpnI | GATC | 2 cut(s) | 177, 255 |
| DpnII | GATC | 2 cut(s) | 175, 253 |
| DraIII | CACNNNGTG | 1 cut(s) | 50 |
| Eco130I | CCWWGG | 2 cut(s) | 93, 311 |
| Eco47I | GGWCC | 1 cut(s) | 308 |
| Eco72I | CACGTG | 1 cut(s) | 144 |
| EcoT14I | CCWWGG | 2 cut(s) | 93, 311 |
| ErhI | CCWWGG | 2 cut(s) | 93, 311 |
| FaeI | CATG | 5 cut(s) | 76, 97, 121, 182, 419 |
| FaiI | YATR | 9 cut(s) | 74, 95, 119, 180, 258, 342, 368, 404, 417 |
| FaqI | GGGAC | 1 cut(s) | 38 |
| FatI | CATG | 5 cut(s) | 72, 93, 117, 178, 415 |
| FbaI | TGATCA | 1 cut(s) | 253 |
| Fnu4HI | GCNGC | 4 cut(s) | 63, 88, 285, 443 |
| FokI | GGATG | 1 cut(s) | 328 |
| Fsp4HI | GCNGC | 4 cut(s) | 63, 88, 285, 443 |
| GlaI | GCGC | 2 cut(s) | 457, 459 |
| GluI | GCNGC | 4 cut(s) | 63, 88, 285, 443 |
| GsuI | CTGGAG | 1 cut(s) | 27 |
| HhaI | GCGC | 2 cut(s) | 458, 460 |
| Hin1II | CATG | 5 cut(s) | 76, 97, 121, 182, 419 |
| Hin6I | GCGC | 2 cut(s) | 456, 458 |
| HinP1I | GCGC | 2 cut(s) | 456, 458 |
| HinfI | GANTC | 1 cut(s) | 138 |
| Hpy188I | TCNGA | 1 cut(s) | 253 |
| HpyCH4III | ACNGT | 1 cut(s) | 436 |
| HpyCH4IV | ACGT | 2 cut(s) | 143, 373 |
| HpyCH4V | TGCA | 3 cut(s) | 357, 442, 473 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 68 |
| HpyF3I | CTNAG | 1 cut(s) | 360 |
| HpySE526I | ACGT | 2 cut(s) | 143, 373 |
| Hsp92II | CATG | 5 cut(s) | 76, 97, 121, 182, 419 |
| HspAI | GCGC | 2 cut(s) | 456, 458 |
| Ksp22I | TGATCA | 1 cut(s) | 253 |
| Kzo9I | GATC | 2 cut(s) | 175, 253 |
| LmnI | GCTCC | 1 cut(s) | 70 |
| LpnPI | CCDG | 4 cut(s) | 81, 248, 381, 483 |
| Lsp1109I | GCAGC | 4 cut(s) | 49, 99, 296, 454 |
| LweI | GCATC | 1 cut(s) | 429 |
| MaeII | ACGT | 2 cut(s) | 143, 373 |
| MalI | GATC | 2 cut(s) | 177, 255 |
| MboI | GATC | 2 cut(s) | 175, 253 |
| MhlI | GDGCHC | 1 cut(s) | 424 |
| MluCI | AATT | 6 cut(s) | 80, 155, 247, 376, 426, 461 |
| MnlI | CCTC | 7 cut(s) | 66, 249, 268, 273, 299, 322, 325 |
| MseI | TTAA | 4 cut(s) | 429, 447, 465, 487 |
| MslI | CAYNNNNRTG | 2 cut(s) | 95, 437 |
| MspCI | CTTAAG | 1 cut(s) | 446 |
| MvnI | CGCG | 1 cut(s) | 458 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 68 |
| NcoI | CCATGG | 1 cut(s) | 93 |
| NdeII | GATC | 2 cut(s) | 175, 253 |
| NlaIII | CATG | 5 cut(s) | 76, 97, 121, 182, 419 |
| OliI | CACNNNNGTG | 1 cut(s) | 95 |
| PauI | GCGCGC | 1 cut(s) | 456 |
| PfeI | GAWTC | 1 cut(s) | 138 |
| PkrI | GCNGC | 4 cut(s) | 64, 89, 286, 444 |
| PmaCI | CACGTG | 1 cut(s) | 144 |
| PmlI | CACGTG | 1 cut(s) | 144 |
| Ppu21I | YACGTR | 1 cut(s) | 144 |
| PsiI | TTATAA | 1 cut(s) | 368 |
| PspCI | CACGTG | 1 cut(s) | 144 |
| PspPI | GGNCC | 1 cut(s) | 308 |
| PteI | GCGCGC | 1 cut(s) | 456 |
| RseI | CAYNNNNRTG | 2 cut(s) | 95, 437 |
| SaqAI | TTAA | 4 cut(s) | 429, 447, 465, 487 |
| SatI | GCNGC | 4 cut(s) | 63, 88, 285, 443 |
| Sau3AI | GATC | 2 cut(s) | 175, 253 |
| Sau96I | GGNCC | 1 cut(s) | 308 |
| SduI | GDGCHC | 1 cut(s) | 424 |
| SetI | ASST | 9 cut(s) | 37, 146, 210, 279, 289, 310, 376, 391, 447 |
| SfaNI | GCATC | 1 cut(s) | 429 |
| SfcI | CTRYAG | 1 cut(s) | 133 |
| SinI | GGWCC | 1 cut(s) | 308 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 95, 437 |
| SmlI | CTYRAG | 2 cut(s) | 30, 446 |
| SmoI | CTYRAG | 2 cut(s) | 30, 446 |
| Sse9I | AATT | 6 cut(s) | 80, 155, 247, 376, 426, 461 |
| StyI | CCWWGG | 2 cut(s) | 93, 311 |
| TaaI | ACNGT | 1 cut(s) | 436 |
| TaiI | ACGT | 2 cut(s) | 146, 376 |
| TaqI | TCGA | 1 cut(s) | 289 |
| TasI | AATT | 6 cut(s) | 80, 155, 247, 376, 426, 461 |
| TfiI | GAWTC | 1 cut(s) | 138 |
| Tru1I | TTAA | 4 cut(s) | 429, 447, 465, 487 |
| Tru9I | TTAA | 4 cut(s) | 429, 447, 465, 487 |
| TscAI | CASTG | 2 cut(s) | 364, 441 |
| TseI | GCWGC | 4 cut(s) | 62, 87, 284, 442 |
| TspDTI | ATGAA | 2 cut(s) | 89, 93 |
| TspRI | CASTG | 2 cut(s) | 364, 441 |
| Vha464I | CTTAAG | 1 cut(s) | 446 |
| VpaK11BI | GGWCC | 1 cut(s) | 308 |
| XapI | RAATTY | 3 cut(s) | 80, 155, 247 |