Rmu_sc0010242.1_g000005

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0010242.1
OG0000016
Physical Location & Seq
Forward (+)
23753 .. 27756
4004 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0010242.1_g000005.1.cds

Sequence Viewer

Length: 2256 bp
atgctgtggagatgctgtgaggactgttgcggggccgttgctgggataccgcgagggctgttccgggcctgttgcggggatgccgctaggattctgcagagatgccgcgaggtctgttgccgagctgctgcggggatgccgctaggattgttgcggggccgctgcggggatgtcgcgggagttgtggatgtgtctcagggtcgcggtgtctcgagaatgcagagccacatgaatgaggggccgcgaggatgcggagctgcgaagaagcggagttggtcgcgcgaggaggcgagcgttagcaggaaaagcaaacgcactcgaaggcagaagacaagcagggcttgcgggcgttgcaagggcagcgaggctaacctggtagggttagcgttgagttgtgacgcggggactgcggggggtttggcagtgaaatcacttgatgacaatctcttcctatttcgttttcattttcttgaagatttgaactctgttcttcaaaaggaactgtggtcttatgcgggtaatttgttattgatggagtgggttgtttcttccgcttcaattagcaatgtcaaactatctcatgtttcactctgggttcatgtacataaactaccatggcttacaatgactgatctgatggtaaagctgattggaaataccctgggagtcttccttgatgttgatcgggatagagattttggttgcattgaaggaactatgaagatccgaactgtgtctcgtcgggttctaagaagtataccagcaagtgattatgttagccaattgccttctccatcaaattctgatgttggtgacactcacttttgggagacggcaccggcaaaggttatggcggtagccaccgagaccatagctgttgtagaccgtttttcgtatttggtcaaggatagttgtgcgggcccggggaagaatcgtatcaacctcttccagaggtggttggtgagtctgatctacggttttcctctggcaaaatgtcaactattccttgaattctgcattcggttactggttctgctgctttcactgggttggttactgtaccattacattccccaactgaccctctgcgagttactccaagaaaatctcctcctaaaatttctaaaccggtggcaaagtggaggtttggagacagttgcaaatcaaagtcgacagtccctaatgcagaggaaggtgtggtccaatttgctcgtactagaaagcatgggaagcacacgatctcgggcacgacgggcccttggaacctttctaaggcctcataaaccagacttcttgttcctcatggagactcagttggaagcagaacaaatggttagtttaagtgaagatttcaatttgtcttgtacagtagtaggtagaagtgacactaggggtggagatttaatgctgttgtggaattttgattgggagtttaaatttctttcttcttctgtgggtcatattgatggagatgctgtaaactcagaacacagagttcatattactggtttctatggtaatccttcgacgaattctcgcattcattcttgggagctcattcgtcgaatctactctacagttttgaacaaatggtttgtgtttggagattttaatgaaattgttgcagtggaggaaaagacgggattaaggcaacgacctttgggtcaaatgctacggtttagggtggtgttggaagaatgtgatctcagtactgtgccttttgaggggtatccatttacatggactaatgggagagagggcaatgaattggtggaggaaaggcttgattgtggagttgcaaatagtgttttattggctgtgttccctcacatctcttgcatacatttgtttagtaaagtctcagatcatcgacctttgttgtttacactacaaactgagctacaaatggtggtgtctagaatgaaaagaaagagaatgttccattttgaggaggtttggctgtctgatccaaggtgttctcaatccatcaaagacaaccgggctacttctattactatgagaaactctacacaagattgcctatcttattgtgccgatgctcttactcactggagtagaattgattttggtaatattactcaccaactgctacttgtgaaacacaaattggatggggcttattcaatgactcataatgatgctcatttggcttccattaaggacttagagtcacagtttgtggagttgcatgataaagaggaggttttatggagacaaagatcaagagcagattga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

751

Amino Acids

85.1

Weight (kDa)

8.72

Isoelectric Point (pI)

47.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000016)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g14281 FvH4_1g17621 FvH4_1g18471 FvH4_1g22021 FvH4_1g26014 FvH4_1g26331 FvH4_1g26332 FvH4_1g27351 FvH4_2g04721 FvH4_3g23731 FvH4_4g01641 FvH4_4g08952 FvH4_5g04831 FvH4_5g06181 FvH4_5g24782 FvH4_6g19793 FvH4_6g21830 FvH4_6g22052 FvH4_6g22781 FvH4_6g28711 FvH4_6g38132 FvH4_7g01611 FvH4_7g04461 FvH4_7g10253
malus_domestica MD12G1214900.v1.1
prunus_persica Prupe.1G178300_v2.0.a1 Prupe.2G081900_v2.0.a1 Prupe.7G035400_v2.0.a1 Prupe.8G101400_v2.0.a1
pyrus_communis pycom1094g00140 pycom11g05210 pycom15g38150
rosa_chinensis RchiOBHm_Chr0c45g0503781 RchiOBHm_Chr2g0127321 RchiOBHm_Chr2g0136131 RchiOBHm_Chr2g0137531 RchiOBHm_Chr3g0458071 RchiOBHm_Chr3g0468741 RchiOBHm_Chr4g0385261 RchiOBHm_Chr4g0398301 RchiOBHm_Chr4g0414741 RchiOBHm_Chr4g0427601 RchiOBHm_Chr5g0038191 RchiOBHm_Chr6g0264691 RchiOBHm_Chr7g0222611
rosa_laevigata RLG00000000450 RLG00000012411 RLG00000013342 RLG00000014003 RLG00000014274 RLG00000015222 RLG00000015327 RLG00000017257 RLG00000018284 RLG00000018325 RLG00000021633 RLG00000030959 RLG00000031522 RLG00000031692 RLG00000034534 RLG00000034656 RLG00000034719 RLG00000034775 RLG00000035707 RLG00000035994 RLG00000036662
rosa_multiflora Rmu_co7958827.1_g000001 Rmu_co7982736.1_g000001 Rmu_co7994068.1_g000001 Rmu_co8004766.1_g000001 Rmu_co8055616.1_g000001 Rmu_co8065842.1_g000001 Rmu_co8075422.1_g000001 Rmu_co8115052.1_g000001 Rmu_co8123540.1_g000001 Rmu_co8130588.1_g000001 Rmu_co8141300.1_g000001 Rmu_co8175458.1_g000001 Rmu_co8181142.1_g000001 Rmu_co8186168.1_g000001 Rmu_co8186320.1_g000001 Rmu_co8193972.1_g000001 Rmu_co8218810.1_g000001 Rmu_co8231243.1_g000001 Rmu_co8235827.1_g000001 Rmu_co8238175.1_g000001 Rmu_co8252519.1_g000001 Rmu_co8277813.1_g000001 Rmu_co8305149.1_g000001 Rmu_co8330153.1_g000001 Rmu_co8337761.1_g000001 Rmu_co8342667.1_g000001 Rmu_co8342835.1_g000001 Rmu_co8350369.1_g000001 Rmu_co8364117.1_g000001 Rmu_co8396865.1_g000001 Rmu_co8397583.1_g000001 Rmu_co8402971.1_g000001 Rmu_co8412027.1_g000001 Rmu_co8412027.1_g000002 Rmu_co8426061.1_g000001 Rmu_co8426061.1_g000002 Rmu_co8432275.1_g000001 Rmu_co8439531.1_g000001 Rmu_co8445913.1_g000001 Rmu_co8449645.1_g000001 Rmu_co8455737.1_g000001 Rmu_co8459617.1_g000001 Rmu_co8465509.1_g000001 Rmu_co8471819.1_g000001 Rmu_co8481247.1_g000001 Rmu_co8504529.1_g000001 Rmu_co8509881.1_g000001 Rmu_co8513417.1_g000001 Rmu_co8519167.1_g000002 Rmu_sc0000028.1_g000006 Rmu_sc0000030.1_g000003 Rmu_sc0000047.1_g000031 Rmu_sc0000084.1_g000023 Rmu_sc0000166.1_g000048 Rmu_sc0000335.1_g000038 Rmu_sc0000361.1_g000054 Rmu_sc0000363.1_g000059 Rmu_sc0000365.1_g000045 Rmu_sc0000367.1_g000153 Rmu_sc0000367.1_g000156 Rmu_sc0000367.1_g000157 Rmu_sc0000370.1_g000020 Rmu_sc0000371.1_g000009 Rmu_sc0000371.1_g000010 Rmu_sc0000371.1_g000037 Rmu_sc0000388.1_g000042 Rmu_sc0000388.1_g000051 Rmu_sc0000388.1_g000060 Rmu_sc0000395.1_g000004 Rmu_sc0000395.1_g000005 Rmu_sc0000447.1_g000006 Rmu_sc0000487.1_g000076 Rmu_sc0000499.1_g000009 Rmu_sc0000508.1_g000007 Rmu_sc0000511.1_g000014 Rmu_sc0000511.1_g000015 Rmu_sc0000516.1_g000028 Rmu_sc0000540.1_g000059 Rmu_sc0000543.1_g000053 Rmu_sc0000556.1_g000011 Rmu_sc0000565.1_g000039 Rmu_sc0000574.1_g000015 Rmu_sc0000575.1_g000008 Rmu_sc0000586.1_g000010 Rmu_sc0000663.1_g000017 Rmu_sc0000676.1_g000012 Rmu_sc0000717.1_g000020 Rmu_sc0000744.1_g000048 Rmu_sc0000764.1_g000004 Rmu_sc0000795.1_g000004 Rmu_sc0000805.1_g000018 Rmu_sc0000805.1_g000034 Rmu_sc0000806.1_g000035 Rmu_sc0000806.1_g000036 Rmu_sc0000838.1_g000013 Rmu_sc0000901.1_g000012 Rmu_sc0001062.1_g000012 Rmu_sc0001075.1_g000024 Rmu_sc0001126.1_g000009 Rmu_sc0001136.1_g000047 Rmu_sc0001143.1_g000025 Rmu_sc0001211.1_g000064 Rmu_sc0001291.1_g000032 Rmu_sc0001385.1_g000001 Rmu_sc0001387.1_g000007 Rmu_sc0001405.1_g000010 Rmu_sc0001433.1_g000034 Rmu_sc0001468.1_g000005 Rmu_sc0001516.1_g000071 Rmu_sc0001544.1_g000029 Rmu_sc0001556.1_g000005 Rmu_sc0001565.1_g000015 Rmu_sc0001569.1_g000001 Rmu_sc0001572.1_g000021 Rmu_sc0001619.1_g000008 Rmu_sc0001623.1_g000004 Rmu_sc0001625.1_g000004 Rmu_sc0001631.1_g000011 Rmu_sc0001653.1_g000032 Rmu_sc0001654.1_g000022 Rmu_sc0001701.1_g000018 Rmu_sc0001749.1_g000001 Rmu_sc0001764.1_g000002 Rmu_sc0001764.1_g000003 Rmu_sc0001793.1_g000058 Rmu_sc0001793.1_g000059 Rmu_sc0001836.1_g000041 Rmu_sc0001850.1_g000008 Rmu_sc0001911.1_g000004 Rmu_sc0002070.1_g000016 Rmu_sc0002070.1_g000032 Rmu_sc0002094.1_g000003 Rmu_sc0002107.1_g000010 Rmu_sc0002116.1_g000005 Rmu_sc0002132.1_g000014 Rmu_sc0002138.1_g000003 Rmu_sc0002192.1_g000015 Rmu_sc0002244.1_g000047 Rmu_sc0002269.1_g000020 Rmu_sc0002271.1_g000008 Rmu_sc0002283.1_g000011 Rmu_sc0002343.1_g000061 Rmu_sc0002343.1_g000074 Rmu_sc0002369.1_g000002 Rmu_sc0002403.1_g000003 Rmu_sc0002425.1_g000011 Rmu_sc0002425.1_g000012 Rmu_sc0002447.1_g000017 Rmu_sc0002494.1_g000013 Rmu_sc0002515.1_g000006 Rmu_sc0002515.1_g000007 Rmu_sc0002529.1_g000018 Rmu_sc0002556.1_g000010 Rmu_sc0002586.1_g000010 Rmu_sc0002693.1_g000012 Rmu_sc0002725.1_g000002 Rmu_sc0002738.1_g000006 Rmu_sc0002754.1_g000037 Rmu_sc0002776.1_g000038 Rmu_sc0002793.1_g000008 Rmu_sc0002840.1_g000003 Rmu_sc0002843.1_g000013 Rmu_sc0002843.1_g000014 Rmu_sc0002848.1_g000015 Rmu_sc0002858.1_g000011 Rmu_sc0002927.1_g000005 Rmu_sc0002955.1_g000018 Rmu_sc0002964.1_g000006 Rmu_sc0002986.1_g000055 Rmu_sc0003064.1_g000003 Rmu_sc0003110.1_g000023 Rmu_sc0003124.1_g000014 Rmu_sc0003226.1_g000009 Rmu_sc0003337.1_g000037 Rmu_sc0003387.1_g000002 Rmu_sc0003443.1_g000021 Rmu_sc0003475.1_g000023 Rmu_sc0003669.1_g000033 Rmu_sc0003722.1_g000039 Rmu_sc0003804.1_g000008 Rmu_sc0003804.1_g000009 Rmu_sc0003809.1_g000015 Rmu_sc0003858.1_g000005 Rmu_sc0003919.1_g000010 Rmu_sc0003919.1_g000011 Rmu_sc0004010.1_g000015 Rmu_sc0004036.1_g000004 Rmu_sc0004086.1_g000014 Rmu_sc0004115.1_g000017 Rmu_sc0004133.1_g000013 Rmu_sc0004139.1_g000002 Rmu_sc0004154.1_g000016 Rmu_sc0004165.1_g000088 Rmu_sc0004206.1_g000010 Rmu_sc0004212.1_g000006 Rmu_sc0004213.1_g000007 Rmu_sc0004331.1_g000018 Rmu_sc0004469.1_g000002 Rmu_sc0004565.1_g000004 Rmu_sc0004574.1_g000059 Rmu_sc0004591.1_g000009 Rmu_sc0004610.1_g000004 Rmu_sc0004610.1_g000005 Rmu_sc0004683.1_g000008 Rmu_sc0004723.1_g000003 Rmu_sc0004795.1_g000006 Rmu_sc0004825.1_g000009 Rmu_sc0004841.1_g000043 Rmu_sc0005039.1_g000005 Rmu_sc0005046.1_g000017 Rmu_sc0005173.1_g000012 Rmu_sc0005197.1_g000005 Rmu_sc0005255.1_g000043 Rmu_sc0005285.1_g000010 Rmu_sc0005310.1_g000051 Rmu_sc0005379.1_g000004 Rmu_sc0005385.1_g000015 Rmu_sc0005416.1_g000030 Rmu_sc0005652.1_g000015 Rmu_sc0005745.1_g000015 Rmu_sc0005748.1_g000007 Rmu_sc0005913.1_g000013 Rmu_sc0005950.1_g000016 Rmu_sc0006028.1_g000010 Rmu_sc0006153.1_g000025 Rmu_sc0006184.1_g000021 Rmu_sc0006240.1_g000001 Rmu_sc0006266.1_g000058 Rmu_sc0006323.1_g000013 Rmu_sc0006410.1_g000011 Rmu_sc0006452.1_g000010 Rmu_sc0006537.1_g000008 Rmu_sc0006669.1_g000011 Rmu_sc0006683.1_g000017 Rmu_sc0006691.1_g000004 Rmu_sc0006691.1_g000005 Rmu_sc0006743.1_g000004 Rmu_sc0006793.1_g000001 Rmu_sc0006793.1_g000002 Rmu_sc0006824.1_g000020 Rmu_sc0006959.1_g000018 Rmu_sc0007006.1_g000003 Rmu_sc0007130.1_g000009 Rmu_sc0007221.1_g000004 Rmu_sc0007222.1_g000004 Rmu_sc0007237.1_g000007 Rmu_sc0007292.1_g000013 Rmu_sc0007402.1_g000004 Rmu_sc0007475.1_g000009 Rmu_sc0007635.1_g000001 Rmu_sc0007742.1_g000023 Rmu_sc0007742.1_g000024 Rmu_sc0007802.1_g000033 Rmu_sc0007833.1_g000002 Rmu_sc0007994.1_g000002 Rmu_sc0007994.1_g000003 Rmu_sc0008079.1_g000002 Rmu_sc0008192.1_g000009 Rmu_sc0008529.1_g000021 Rmu_sc0008546.1_g000003 Rmu_sc0008564.1_g000001 Rmu_sc0008676.1_g000026 Rmu_sc0008713.1_g000017 Rmu_sc0008834.1_g000004 Rmu_sc0008967.1_g000017 Rmu_sc0009073.1_g000001 Rmu_sc0009449.1_g000002 Rmu_sc0009674.1_g000003 Rmu_sc0009725.1_g000006 Rmu_sc0010019.1_g000012 Rmu_sc0010132.1_g000034 Rmu_sc0010190.1_g000005 Rmu_sc0010221.1_g000003 Rmu_sc0010224.1_g000002 Rmu_sc0010242.1_g000005 Rmu_sc0010262.1_g000002 Rmu_sc0010338.1_g000011 Rmu_sc0010368.1_g000003 Rmu_sc0010533.1_g000001 Rmu_sc0011216.1_g000005 Rmu_sc0011272.1_g000003 Rmu_sc0011582.1_g000011 Rmu_sc0011585.1_g000002 Rmu_sc0011851.1_g000003 Rmu_sc0011851.1_g000006 Rmu_sc0011917.1_g000001 Rmu_sc0012031.1_g000005 Rmu_sc0012591.1_g000001 Rmu_sc0012856.1_g000014 Rmu_sc0013107.1_g000001 Rmu_sc0013545.1_g000001 Rmu_sc0013783.1_g000005 Rmu_sc0013801.1_g000004 Rmu_sc0013980.1_g000004 Rmu_sc0014006.1_g000006 Rmu_sc0014097.1_g000013 Rmu_sc0014404.1_g000011 Rmu_sc0015273.1_g000001 Rmu_sc0015957.1_g000003 Rmu_sc0015996.1_g000001 Rmu_sc0016141.1_g000011 Rmu_sc0016264.1_g000003 Rmu_sc0017005.1_g000007 Rmu_sc0017112.1_g000001 Rmu_sc0017245.1_g000001 Rmu_sc0018139.1_g000001 Rmu_sc0018325.1_g000007 Rmu_sc0018528.1_g000005 Rmu_sc0018646.1_g000003 Rmu_sc0019157.1_g000002 Rmu_sc0019342.1_g000001 Rmu_sc0019693.1_g000001 Rmu_sc0019742.1_g000003 Rmu_sc0020648.1_g000001 Rmu_sc0021123.1_g000002 Rmu_sc0022252.1_g000001 Rmu_sc0022252.1_g000002 Rmu_sc0023534.1_g000004 Rmu_sc0023853.1_g000003 Rmu_sc0024187.1_g000001 Rmu_sc0024395.1_g000001 Rmu_sc0024668.1_g000001 Rmu_sc0025262.1_g000001 Rmu_sc0026159.1_g000001 Rmu_sc0026159.1_g000002 Rmu_sc0026590.1_g000003 Rmu_sc0027036.1_g000008 Rmu_sc0027184.1_g000006 Rmu_sc0027690.1_g000002 Rmu_sc0030913.1_g000001 Rmu_sc0032471.1_g000002 Rmu_sc0033139.1_g000001 Rmu_sc0033765.1_g000002 Rmu_sc0034257.1_g000002 Rmu_sc0034655.1_g000001 Rmu_sc0035277.1_g000001 Rmu_sc0035833.1_g000001 Rmu_sc0037386.1_g000002 Rmu_sc0042113.1_g000001 Rmu_sc0042241.1_g000001 Rmu_ssc0000011.1_g000022 Rmu_ssc0000026.1_g000004 Rmu_ssc0000042.1_g000015 Rmu_ssc0000071.1_g000003 Rmu_ssc0000087.1_g000002 Rmu_ssc0000091.1_g000023 Rmu_ssc0000120.1_g000002 Rmu_ssc0000127.1_g000002 Rmu_ssc0000151.1_g000019 Rmu_ssc0000197.1_g000021 Rmu_ssc0000215.1_g000014 Rmu_ssc0000240.1_g000011 Rmu_ssc0000252.1_g000035 Rmu_ssc0000255.1_g000075 Rmu_ssc0000377.1_g000026 Rmu_ssc0000388.1_g000055 Rmu_ssc0000391.1_g000010 Rmu_ssc0000395.1_g000043 Rmu_ssc0000432.1_g000011 Rmu_ssc0000432.1_g000045 Rmu_ssc0000432.1_g000084
rosa_roxburghii Rroxscaffold_1G00003990 Rroxscaffold_1G00032350 Rroxscaffold_2G00104520 Rroxscaffold_2G00114410 Rroxscaffold_3G00261440 Rroxscaffold_5G00340750 Rroxscaffold_5G00344400 Rroxscaffold_5G00360340 Rroxscaffold_6G00400850 Rroxscaffold_7G00187980 Rroxscaffold_7G00191360
rosa_rugosa Rorug01G0062600 Rorug01G0235400 Rorug01G0286700 Rorug01G0286800 Rorug01G0332400 Rorug01G0332900 Rorug02G0087500 Rorug02G0110000.1 Rorug02G0114100 Rorug02G0262600 Rorug02G0330000 Rorug03G0232500 Rorug04G0022800 Rorug04G0038200 Rorug04G0114000 Rorug04G0158400 Rorug05G0168700 Rorug05G0171500 Rorug05G0206300 Rorug05G0225600 Rorug05G0256100 Rorug05G0263900 Rorug05G0317700 Rorug05G0341300 Rorug05G0389400 Rorug05G0393000 Rorug05G0393000 Rorug05G0511600 Rorug05G0586200 Rorug06G0124100 Rorug06G0124200 Rorug06G0509200 Rorug07G0197400 Rorug07G0198900 Rorug07G0289300 Rorug07G0289400.1 Rorug07G0294900
rosa_samantha Rh1AG125600 Rh1BG063800 Rh1BG063900 Rh1BG151300 Rh1BG172600 Rh1CG061300 Rh1DG100800 Rh1DG122100 Rh1DG202600 Rh2AG031700 Rh2AG179100 Rh2AG215600 Rh2AG226900 Rh2AG257200 Rh2AG296600 Rh2AG420600 Rh2AG501700 Rh2AG631000 Rh2BG203000 Rh2CG062400 Rh2CG263600 Rh2CG563700 Rh2DG031200 Rh2DG320600 Rh2DG572400 Rh3CG209000 Rh3CG215500 Rh3CG234400 Rh3CG280600 Rh3CG336200 Rh3DG334900 Rh3DG339300 Rh4AG215100 Rh4AG340100 Rh4BG070800 Rh4BG096700 Rh4BG224600 Rh4BG262700 Rh4CG004600 Rh4CG196600 Rh4CG196700 Rh4CG196800 Rh4DG342500 Rh5AG066500 Rh5AG248900 Rh5AG424500 Rh5AG432600 Rh5BG115800 Rh5BG169600 Rh5CG066900 Rh5CG221400 Rh5CG227600 Rh5CG257700 Rh5CG266400 Rh5CG284700 Rh5CG319500 Rh5CG363800 Rh5CG379900 Rh5DG123900 Rh5DG367800 Rh5DG472100 Rh5DG515000 Rh5DG518000 Rh5DG548100 Rh6AG085900 Rh6AG092100 Rh6CG188200 Rh6CG190400 Rh6DG188700 Rh6DG277200 Rh6DG459400 Rh7AG010600 Rh7AG225900 Rh7AG316900 Rh7AG321000 Rh7AG483600 Rh7BG142800 Rh7DG047400 Rh7DG114300 Rh7DG143800 Rh7DG233100 Rh7DG244700 Rh7DG254300 Rh7DG327600 Rh7DG345200 Rh7DG378400
rosa_wichuraiana Rw3G012560 Rw3G022840 Rw4G003390 Rw5G027110

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1662
AccB1I GGYRCC 1 cut(s) 835
AccI GTMKAC 3 cut(s) 757, 882, 1171
AccII CGCG 8 cut(s) 52, 108, 176, 204, 244, 280, 282, 401
AclWI GGATC 2 cut(s) 718, 1961
AcsI RAATTY 6 cut(s) 799, 1010, 1118, 1417, 1436, 1531
AfaI GTAC 5 cut(s) 603, 1061, 1215, 1366, 1711
AfiI CCNNNNNNNGG 6 cut(s) 42, 75, 166, 1272, 1724, 1948
AgeI ACCGGT 1 cut(s) 1128
AgsI TTSAA 9 cut(s) 473, 481, 494, 558, 710, 1010, 1354, 1585, 2145
AhdI GACNNNNNGTC 1 cut(s) 2188
AjnI CCWGG 2 cut(s) 372, 660
AjuI GAANNNNNNNTTGG 2 cut(s) 2111, 2143
AluBI AGCT 6 cut(s) 125, 257, 646, 875, 1555, 1900
AluI AGCT 6 cut(s) 125, 257, 646, 875, 1555, 1900
Alw21I GWGCWC 1 cut(s) 1557
Alw26I GTCTC 9 cut(s) 198, 214, 741, 824, 860, 1145, 1301, 1864, 2227
AlwI GGATC 2 cut(s) 718, 1961
Ama87I CYCGRG 3 cut(s) 211, 922, 1242
AoxI GGCC 7 cut(s) 33, 66, 157, 239, 919, 1254, 1274
ApaI GGGCCC 2 cut(s) 923, 1258
ApeKI GCWGC 6 cut(s) 125, 128, 162, 257, 360, 1036
ApoI RAATTY 6 cut(s) 799, 1010, 1118, 1417, 1436, 1531
AsiGI ACCGGT 1 cut(s) 1128
AspLEI GCGC 1 cut(s) 282
AspS9I GGNCC 9 cut(s) 33, 66, 157, 239, 919, 920, 1200, 1254, 1255
AsuC2I CCSGG 4 cut(s) 65, 923, 924, 2000
AsuHPI GGTGA 3 cut(s) 824, 973, 2093
AvaI CYCGRG 3 cut(s) 211, 922, 1242
AvaII GGWCC 1 cut(s) 1200
BaeGI GKGCMC 3 cut(s) 923, 1249, 1258
BanI GGYRCC 1 cut(s) 835
BanII GRGCYC 3 cut(s) 923, 1258, 1557
BbsI GAAGAC 2 cut(s) 335, 661
Bbv12I GWGCWC 1 cut(s) 1557
BbvI GCAGC 6 cut(s) 112, 115, 149, 244, 372, 1023
BccI CCATC 6 cut(s) 526, 631, 802, 1460, 1994, 2126
BceAI ACGGC 2 cut(s) 20, 849
BciT130I CCWGG 2 cut(s) 374, 662
BciVI GTATCC 2 cut(s) 39, 1740
BcnI CCSGG 4 cut(s) 65, 923, 924, 2000
BcoDI GTCTC 9 cut(s) 198, 214, 741, 824, 860, 1145, 1301, 1864, 2227
BfaI CTAG 5 cut(s) 87, 143, 1217, 1389, 1917
BfmI CTRYAG 2 cut(s) 95, 1575
BfuI GTATCC 2 cut(s) 39, 1740
BmcAI AGTACT 1 cut(s) 1711
Bme1390I CCNGG 6 cut(s) 65, 374, 662, 923, 924, 2000
Bme18I GGWCC 1 cut(s) 1200
BmeRI GACNNNNNGTC 1 cut(s) 2188
BmeT110I CYCGRG 3 cut(s) 211, 922, 1242
BmgT120I GGNCC 9 cut(s) 33, 66, 157, 239, 919, 920, 1200, 1254, 1255
BmiI GGNNCC 7 cut(s) 34, 158, 240, 837, 921, 1256, 1264
BmrFI CCNGG 6 cut(s) 65, 374, 662, 923, 924, 2000
BmrI ACTGGG 1 cut(s) 1055
BmsI GCATC 8 cut(s) 2, 70, 92, 126, 239, 1462, 2047, 2149
BmuI ACTGGG 1 cut(s) 1055
BpiI GAAGAC 2 cut(s) 335, 661
BpmI CTGGAG 1 cut(s) 2092
BpuMI CCSGG 4 cut(s) 65, 923, 924, 2000
BsaBI GATNNNNATC 2 cut(s) 441, 681
BsaI GGTCTC 1 cut(s) 860
BsaJI CCNNGG 7 cut(s) 614, 660, 661, 922, 923, 1258, 1970
BsaWI WCCGGW 1 cut(s) 1128
BsaXI ACNNNNNCTCC 5 cut(s) 31, 1298, 1328, 1461, 1491
Bsc4I CCNNNNNNNGG 6 cut(s) 42, 75, 166, 1272, 1724, 1948
Bse118I RCCGGY 2 cut(s) 838, 1128
Bse1I ACTGG 4 cut(s) 1032, 1050, 1510, 2075
Bse3DI GCAATG 2 cut(s) 571, 1768
Bse8I GATNNNNATC 2 cut(s) 441, 681
BseBI CCWGG 2 cut(s) 374, 662
BseDI CCNNGG 7 cut(s) 614, 660, 661, 922, 923, 1258, 1970
BseGI GGATG 6 cut(s) 85, 141, 175, 193, 254, 2137
BseJI GATNNNNATC 2 cut(s) 441, 681
BseLI CCNNNNNNNGG 6 cut(s) 42, 75, 166, 1272, 1724, 1948
BseMI GCAATG 2 cut(s) 571, 1768
BseMII CTCAG 6 cut(s) 209, 1325, 1497, 1720, 1875, 1887
BseNI ACTGG 4 cut(s) 1032, 1050, 1510, 2075
BseRI GAGGAG 4 cut(s) 299, 1100, 1964, 2234
BseSI GKGCMC 3 cut(s) 923, 1249, 1258
BseXI GCAGC 6 cut(s) 112, 115, 149, 244, 372, 1023
BseYI CCCAGC 1 cut(s) 41
Bsh1236I CGCG 8 cut(s) 52, 108, 176, 204, 244, 280, 282, 401
BshFI GGCC 7 cut(s) 35, 68, 159, 241, 921, 1256, 1276
BshNI GGYRCC 1 cut(s) 835
BshTI ACCGGT 1 cut(s) 1128
BsiHKAI GWGCWC 1 cut(s) 1557
BsiHKCI CYCGRG 3 cut(s) 211, 922, 1242
BsiSI CCGG 5 cut(s) 64, 839, 923, 1129, 1999
BslFI GGGAC 2 cut(s) 418, 1162
BslI CCNNNNNNNGG 6 cut(s) 42, 75, 166, 1272, 1724, 1948
BsmAI GTCTC 9 cut(s) 198, 214, 741, 824, 860, 1145, 1301, 1864, 2227
BsmBI CGTCTC 1 cut(s) 824
BsmFI GGGAC 2 cut(s) 418, 1162
BsmI GAATGC 3 cut(s) 222, 1017, 1539
BsnI GGCC 7 cut(s) 35, 68, 159, 241, 921, 1256, 1276
Bso31I GGTCTC 1 cut(s) 860
BsoBI CYCGRG 3 cut(s) 211, 922, 1242
Bsp120I GGGCCC 2 cut(s) 919, 1254
Bsp1286I GDGCHC 4 cut(s) 923, 1249, 1258, 1557
Bsp1407I TGTACA 2 cut(s) 601, 1364
Bsp143I GATC 9 cut(s) 631, 682, 723, 969, 1238, 1702, 1864, 1966, 2240
Bsp19I CCATGG 1 cut(s) 614
BspANI GGCC 7 cut(s) 35, 68, 159, 241, 921, 1256, 1276
BspCNI CTCAG 6 cut(s) 208, 1324, 1496, 1719, 1874, 1888
BspFNI CGCG 8 cut(s) 52, 108, 176, 204, 244, 280, 282, 401
BspLI GGNNCC 7 cut(s) 34, 158, 240, 837, 921, 1256, 1264
BspMAI CTGCAG 1 cut(s) 99
BspPI GGATC 2 cut(s) 718, 1961
BspT107I GGYRCC 1 cut(s) 835
BspTNI GGTCTC 1 cut(s) 860
BsrDI GCAATG 2 cut(s) 571, 1768
BsrFI RCCGGY 2 cut(s) 838, 1128
BsrGI TGTACA 2 cut(s) 601, 1364
BsrI ACTGG 4 cut(s) 1032, 1050, 1510, 2075
BssAI RCCGGY 2 cut(s) 838, 1128
BssECI CCNNGG 7 cut(s) 614, 660, 661, 922, 923, 1258, 1970
BssMI GATC 9 cut(s) 631, 682, 723, 969, 1238, 1702, 1864, 1966, 2240
BssNAI GTATAC 1 cut(s) 758
BssT1I CCWWGG 3 cut(s) 614, 1258, 1970
Bst1107I GTATAC 1 cut(s) 758
Bst2UI CCWGG 2 cut(s) 374, 662
Bst6I CTCTTC 2 cut(s) 452, 950
BstAPI GCANNNNNTGC 1 cut(s) 342
BstAUI TGTACA 2 cut(s) 601, 1364
BstC8I GCNNGC 4 cut(s) 292, 343, 347, 919
BstDEI CTNAG 9 cut(s) 195, 749, 1271, 1311, 1483, 1706, 1861, 1896, 2185
BstDSI CCRYGG 1 cut(s) 614
BstENI CCTNNNNNAGG 1 cut(s) 1270
BstF5I GGATG 6 cut(s) 85, 141, 175, 193, 254, 2137
BstFNI CGCG 8 cut(s) 52, 108, 176, 204, 244, 280, 282, 401
BstHHI GCGC 1 cut(s) 282
BstKTI GATC 9 cut(s) 634, 685, 726, 972, 1241, 1705, 1867, 1969, 2243
BstMAI GTCTC 9 cut(s) 198, 214, 741, 824, 860, 1145, 1301, 1864, 2227
BstMBI GATC 9 cut(s) 631, 682, 723, 969, 1238, 1702, 1864, 1966, 2240
BstMWI GCNNNNNNNGC 8 cut(s) 306, 342, 351, 360, 407, 1230, 1253, 2168
BstNI CCWGG 2 cut(s) 374, 662
BstSCI CCNGG 6 cut(s) 63, 372, 660, 921, 922, 1998
BstSFI CTRYAG 2 cut(s) 95, 1575
BstSLI GKGCMC 3 cut(s) 923, 1249, 1258
BstUI CGCG 8 cut(s) 52, 108, 176, 204, 244, 280, 282, 401
BstV1I GCAGC 6 cut(s) 112, 115, 149, 244, 372, 1023
BstV2I GAAGAC 2 cut(s) 335, 661
BstX2I RGATCY 1 cut(s) 723
BstXI CCANNNNNNTGG 1 cut(s) 1740
BstYI RGATCY 1 cut(s) 723
BstZ17I GTATAC 1 cut(s) 758
BsuI GTATCC 2 cut(s) 39, 1740
BsuRI GGCC 7 cut(s) 35, 68, 159, 241, 921, 1256, 1276
BtgI CCRYGG 1 cut(s) 614
BtsCI GGATG 6 cut(s) 85, 141, 175, 193, 254, 2137
BtsI GCAGTG 2 cut(s) 429, 1632
BtsIMutI CAGTG 4 cut(s) 429, 1043, 1632, 2068
Cac8I GCNNGC 4 cut(s) 292, 343, 347, 919
CfoI GCGC 1 cut(s) 282
Cfr10I RCCGGY 2 cut(s) 838, 1128
Cfr13I GGNCC 9 cut(s) 33, 66, 157, 239, 919, 920, 1200, 1254, 1255
Cfr9I CCCGGG 1 cut(s) 922
CseI GACGC 1 cut(s) 407
CsiI ACCWGGT 1 cut(s) 372
Csp6I GTAC 5 cut(s) 602, 1060, 1214, 1365, 1710
CspAI ACCGGT 1 cut(s) 1128
CviAII CATG 8 cut(s) 229, 581, 599, 615, 1225, 1303, 1740, 2210
CviQI GTAC 5 cut(s) 602, 1060, 1214, 1365, 1710
DdeI CTNAG 9 cut(s) 195, 749, 1271, 1311, 1483, 1706, 1861, 1896, 2185
DpnI GATC 9 cut(s) 633, 684, 725, 971, 1240, 1704, 1866, 1968, 2242
DpnII GATC 9 cut(s) 631, 682, 723, 969, 1238, 1702, 1864, 1966, 2240
DraI TTTAAA 1 cut(s) 1435
DrdI GACNNNNNNGTC 1 cut(s) 1662
DriI GACNNNNNGTC 1 cut(s) 2188
DseDI GACNNNNNNGTC 1 cut(s) 1662
Eam1104I CTCTTC 2 cut(s) 452, 950
Eam1105I GACNNNNNGTC 1 cut(s) 2188
EarI CTCTTC 2 cut(s) 452, 950
Ecl136II GAGCTC 1 cut(s) 1555
Eco130I CCWWGG 3 cut(s) 614, 1258, 1970
Eco147I AGGCCT 1 cut(s) 1276
Eco24I GRGCYC 3 cut(s) 923, 1258, 1557
Eco31I GGTCTC 1 cut(s) 860
Eco47I GGWCC 1 cut(s) 1200
Eco53kI GAGCTC 1 cut(s) 1555
Eco88I CYCGRG 3 cut(s) 211, 922, 1242
EcoICRI GAGCTC 1 cut(s) 1555
EcoNI CCTNNNNNAGG 1 cut(s) 1270
EcoO109I RGGNCCY 1 cut(s) 1255
EcoRI GAATTC 2 cut(s) 1010, 1531
EcoRII CCWGG 2 cut(s) 372, 660
EcoT14I CCWWGG 3 cut(s) 614, 1258, 1970
EcoT38I GRGCYC 3 cut(s) 923, 1258, 1557
ErhI CCWWGG 3 cut(s) 614, 1258, 1970
Esp3I CGTCTC 1 cut(s) 824
FaeI CATG 8 cut(s) 232, 584, 602, 618, 1228, 1306, 1743, 2213
FalI AAGNNNNNCTT 2 cut(s) 325, 357
FaqI GGGAC 2 cut(s) 418, 1162
FatI CATG 8 cut(s) 228, 580, 598, 614, 1224, 1302, 1739, 2209
FblI GTMKAC 3 cut(s) 757, 882, 1171
FokI GGATG 6 cut(s) 92, 148, 182, 200, 261, 2144
FriOI GRGCYC 3 cut(s) 923, 1258, 1557
FspBI CTAG 5 cut(s) 87, 143, 1217, 1389, 1917
GlaI GCGC 1 cut(s) 281
GsaI CCCAGC 1 cut(s) 45
GsuI CTGGAG 1 cut(s) 2092
HaeIII GGCC 7 cut(s) 35, 68, 159, 241, 921, 1256, 1276
HapII CCGG 5 cut(s) 64, 839, 923, 1129, 1999
HgaI GACGC 1 cut(s) 407
HhaI GCGC 1 cut(s) 282
Hin1II CATG 8 cut(s) 232, 584, 602, 618, 1228, 1306, 1743, 2213
Hin6I GCGC 1 cut(s) 280
HinP1I GCGC 1 cut(s) 280
HincII GTYRAC 2 cut(s) 998, 1172
HindII GTYRAC 2 cut(s) 998, 1172
HinfI GANTC 8 cut(s) 91, 666, 931, 964, 1309, 1566, 2149, 2189
HpaII CCGG 5 cut(s) 64, 839, 923, 1129, 1999
HphI GGTGA 3 cut(s) 824, 973, 2093
Hpy166II GTNNAC 6 cut(s) 758, 883, 998, 1172, 1480, 1884
Hpy188I TCNGA 7 cut(s) 636, 728, 805, 969, 1486, 1864, 1966
Hpy188III TCNNGA 7 cut(s) 211, 213, 470, 686, 949, 1917, 2244
Hpy8I GTNNAC 6 cut(s) 758, 883, 998, 1172, 1480, 1884
Hpy99I CGWCG 4 cut(s) 744, 1254, 1531, 1566
HpyAV CCTTC 5 cut(s) 315, 704, 798, 1186, 1533
HpyF10VI GCNNNNNNNGC 8 cut(s) 306, 342, 351, 360, 407, 1230, 1253, 2168
HpyF3I CTNAG 9 cut(s) 195, 749, 1271, 1311, 1483, 1706, 1861, 1896, 2185
Hsp92II CATG 8 cut(s) 232, 584, 602, 618, 1228, 1306, 1743, 2213
HspAI GCGC 1 cut(s) 280
Kzo9I GATC 9 cut(s) 631, 682, 723, 969, 1238, 1702, 1864, 1966, 2240
LmnI GCTCC 2 cut(s) 254, 1552
Lsp1109I GCAGC 6 cut(s) 112, 115, 149, 244, 372, 1023
LweI GCATC 8 cut(s) 2, 70, 92, 126, 239, 1462, 2047, 2149
MabI ACCWGGT 1 cut(s) 372
MaeI CTAG 5 cut(s) 87, 143, 1217, 1389, 1917
MaeIII GTNAC 7 cut(s) 395, 812, 1023, 1053, 1092, 1382, 2190
MalI GATC 9 cut(s) 633, 684, 725, 971, 1240, 1704, 1866, 1968, 2242
MboI GATC 9 cut(s) 631, 682, 723, 969, 1238, 1702, 1864, 1966, 2240
MfeI CAATTG 1 cut(s) 782
MflI RGATCY 1 cut(s) 723
MhlI GDGCHC 4 cut(s) 923, 1249, 1258, 1557
MlyI GAGTC 5 cut(s) 675, 973, 1303, 2143, 2198
MmeI TCCRAC 2 cut(s) 1296, 1671
MseI TTAA 6 cut(s) 1340, 1403, 1434, 1611, 1646, 2178
MslI CAYNNNNRTG 4 cut(s) 231, 1464, 1738, 2157
MspA1I CMGCKG 1 cut(s) 162
MspI CCGG 5 cut(s) 64, 839, 923, 1129, 1999
MspR9I CCNGG 6 cut(s) 65, 374, 662, 923, 924, 2000
MunI CAATTG 1 cut(s) 782
Mva1269I GAATGC 3 cut(s) 222, 1017, 1539
MvaI CCWGG 2 cut(s) 374, 662
MvnI CGCG 8 cut(s) 52, 108, 176, 204, 244, 280, 282, 401
MwoI GCNNNNNNNGC 8 cut(s) 306, 342, 351, 360, 407, 1230, 1253, 2168
NciI CCSGG 4 cut(s) 65, 923, 924, 2000
NcoI CCATGG 1 cut(s) 614
NdeII GATC 9 cut(s) 631, 682, 723, 969, 1238, 1702, 1864, 1966, 2240
NlaIII CATG 8 cut(s) 232, 584, 602, 618, 1228, 1306, 1743, 2213
NlaIV GGNNCC 7 cut(s) 34, 158, 240, 837, 921, 1256, 1264
NmeAIII GCCGAG 1 cut(s) 146
NmuCI GTSAC 4 cut(s) 395, 812, 1382, 2190
PaeR7I CTCGAG 1 cut(s) 211
PasI CCCWGGG 1 cut(s) 661
PceI AGGCCT 1 cut(s) 1276
PctI GAATGC 3 cut(s) 222, 1017, 1539
PfeI GAWTC 3 cut(s) 91, 931, 1566
PinAI ACCGGT 1 cut(s) 1128
PleI GAGTC 5 cut(s) 674, 972, 1303, 2143, 2197
PpsI GAGTC 5 cut(s) 674, 972, 1303, 2143, 2197
Psp124BI GAGCTC 1 cut(s) 1557
Psp6I CCWGG 2 cut(s) 372, 660
PspFI CCCAGC 1 cut(s) 41
PspGI CCWGG 2 cut(s) 372, 660
PspN4I GGNNCC 7 cut(s) 34, 158, 240, 837, 921, 1256, 1264
PspOMI GGGCCC 2 cut(s) 919, 1254
PspPI GGNCC 9 cut(s) 33, 66, 157, 239, 919, 920, 1200, 1254, 1255
PstI CTGCAG 1 cut(s) 99
PsuI RGATCY 1 cut(s) 723
RsaI GTAC 5 cut(s) 603, 1061, 1215, 1366, 1711
RsaNI GTAC 5 cut(s) 602, 1060, 1214, 1365, 1710
RseI CAYNNNNRTG 4 cut(s) 231, 1464, 1738, 2157
SacI GAGCTC 1 cut(s) 1557
SalI GTCGAC 1 cut(s) 1170
SaqAI TTAA 6 cut(s) 1340, 1403, 1434, 1611, 1646, 2178
Sau3AI GATC 9 cut(s) 631, 682, 723, 969, 1238, 1702, 1864, 1966, 2240
Sau96I GGNCC 9 cut(s) 33, 66, 157, 239, 919, 920, 1200, 1254, 1255
ScaI AGTACT 1 cut(s) 1711
SchI GAGTC 5 cut(s) 675, 973, 1303, 2143, 2198
ScrFI CCNGG 6 cut(s) 65, 374, 662, 923, 924, 2000
SduI GDGCHC 4 cut(s) 923, 1249, 1258, 1557
SexAI ACCWGGT 1 cut(s) 372
SfaNI GCATC 8 cut(s) 2, 70, 92, 126, 239, 1462, 2047, 2149
SfcI CTRYAG 2 cut(s) 95, 1575
Sfr274I CTCGAG 1 cut(s) 211
SinI GGWCC 1 cut(s) 1200
SlaI CTCGAG 1 cut(s) 211
SmaI CCCGGG 1 cut(s) 924
SmiMI CAYNNNNRTG 4 cut(s) 231, 1464, 1738, 2157
SmlI CTYRAG 1 cut(s) 211
SmoI CTYRAG 1 cut(s) 211
SseBI AGGCCT 1 cut(s) 1276
SspI AATATT 1 cut(s) 2095
SspMI CTAG 5 cut(s) 87, 143, 1217, 1389, 1917
SstI GAGCTC 1 cut(s) 1557
StuI AGGCCT 1 cut(s) 1276
StyD4I CCNGG 6 cut(s) 63, 372, 660, 921, 922, 1998
StyI CCWWGG 3 cut(s) 614, 1258, 1970
TaqI TCGA 6 cut(s) 212, 319, 1171, 1526, 1564, 1870
TatI WGTACW 3 cut(s) 601, 1364, 1709
TauI GCSGC 5 cut(s) 86, 108, 142, 162, 244
TfiI GAWTC 3 cut(s) 91, 931, 1566
Tru1I TTAA 6 cut(s) 1340, 1403, 1434, 1611, 1646, 2178
Tru9I TTAA 6 cut(s) 1340, 1403, 1434, 1611, 1646, 2178
TscAI CASTG 4 cut(s) 429, 1050, 1632, 2075
TseFI GTSAC 4 cut(s) 395, 812, 1382, 2190
TseI GCWGC 6 cut(s) 125, 128, 162, 257, 360, 1036
Tsp45I GTSAC 4 cut(s) 395, 812, 1382, 2190
TspDTI ATGAA 9 cut(s) 245, 452, 587, 734, 1487, 1532, 1629, 1779, 1937
TspMI CCCGGG 1 cut(s) 922
TspRI CASTG 4 cut(s) 429, 1050, 1632, 2075
VpaK11BI GGWCC 1 cut(s) 1200
XagI CCTNNNNNAGG 1 cut(s) 1270
XapI RAATTY 6 cut(s) 799, 1010, 1118, 1417, 1436, 1531
XbaI TCTAGA 1 cut(s) 1916
XhoI CTCGAG 1 cut(s) 211
XmaI CCCGGG 1 cut(s) 922
XmiI GTMKAC 3 cut(s) 757, 882, 1171
XspI CTAG 5 cut(s) 87, 143, 1217, 1389, 1917
ZrmI AGTACT 1 cut(s) 1711
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.