ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| YTH | PF04146 | 385 - 525 | 3.9e-47 | YT521-B-like domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 441 |
| AccB1I | GGYRCC | 1 cut(s) | 1037 |
| AccI | GTMKAC | 2 cut(s) | 384, 1664 |
| AciI | CCGC | 3 cut(s) | 177, 261, 1277 |
| AclWI | GGATC | 3 cut(s) | 410, 1113, 1661 |
| AcoI | YGGCCR | 1 cut(s) | 1363 |
| AcsI | RAATTY | 1 cut(s) | 1538 |
| AcuI | CTGAAG | 3 cut(s) | 705, 1529, 1701 |
| AcyI | GRCGYC | 1 cut(s) | 1038 |
| AfaI | GTAC | 5 cut(s) | 331, 431, 842, 1205, 1222 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 585, 722 |
| AgsI | TTSAA | 6 cut(s) | 20, 98, 818, 952, 1564, 1573 |
| AhdI | GACNNNNNGTC | 2 cut(s) | 467, 1515 |
| AjnI | CCWGG | 4 cut(s) | 283, 394, 406, 526 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 1012, 1044 |
| AluBI | AGCT | 5 cut(s) | 147, 279, 344, 750, 1352 |
| AluI | AGCT | 5 cut(s) | 147, 279, 344, 750, 1352 |
| Alw21I | GWGCWC | 3 cut(s) | 694, 752, 766 |
| Alw26I | GTCTC | 4 cut(s) | 132, 734, 1051, 1515 |
| Alw44I | GTGCAC | 1 cut(s) | 762 |
| AlwI | GGATC | 3 cut(s) | 410, 1113, 1661 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 433 |
| Ama87I | CYCGRG | 1 cut(s) | 751 |
| AoxI | GGCC | 2 cut(s) | 792, 1363 |
| ApaLI | GTGCAC | 1 cut(s) | 762 |
| ApeKI | GCWGC | 6 cut(s) | 5, 158, 827, 830, 1290, 1684 |
| ApoI | RAATTY | 1 cut(s) | 1538 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 871, 903 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1568 |
| AspLEI | GCGC | 1 cut(s) | 1040 |
| AspS9I | GGNCC | 3 cut(s) | 589, 938, 1013 |
| AsuHPI | GGTGA | 2 cut(s) | 221, 480 |
| AvaI | CYCGRG | 1 cut(s) | 751 |
| AvaII | GGWCC | 3 cut(s) | 589, 938, 1013 |
| BaeGI | GKGCMC | 1 cut(s) | 766 |
| BanI | GGYRCC | 1 cut(s) | 1037 |
| BanII | GRGCYC | 1 cut(s) | 752 |
| BauI | CACGAG | 1 cut(s) | 687 |
| BbsI | GAAGAC | 1 cut(s) | 1185 |
| Bbv12I | GWGCWC | 3 cut(s) | 694, 752, 766 |
| BbvI | GCAGC | 5 cut(s) | 170, 839, 842, 1277, 1696 |
| BccI | CCATC | 8 cut(s) | 42, 134, 331, 452, 455, 601, 602, 1351 |
| BceAI | ACGGC | 3 cut(s) | 1096, 1350, 1611 |
| BciT130I | CCWGG | 4 cut(s) | 285, 396, 408, 528 |
| BciVI | GTATCC | 1 cut(s) | 305 |
| BcoDI | GTCTC | 4 cut(s) | 132, 734, 1051, 1515 |
| BfaI | CTAG | 3 cut(s) | 195, 678, 1218 |
| BfmI | CTRYAG | 1 cut(s) | 1171 |
| BfoI | RGCGCY | 1 cut(s) | 1041 |
| BfuAI | ACCTGC | 1 cut(s) | 441 |
| BfuI | GTATCC | 1 cut(s) | 305 |
| BisI | GCNGC | 7 cut(s) | 6, 159, 828, 831, 1278, 1291, 1685 |
| BlsI | GCNGC | 7 cut(s) | 7, 160, 829, 832, 1279, 1292, 1686 |
| BmcAI | AGTACT | 2 cut(s) | 331, 1222 |
| Bme1390I | CCNGG | 4 cut(s) | 285, 396, 408, 528 |
| Bme18I | GGWCC | 3 cut(s) | 589, 938, 1013 |
| BmeRI | GACNNNNNGTC | 2 cut(s) | 467, 1515 |
| BmeT110I | CYCGRG | 1 cut(s) | 751 |
| BmgT120I | GGNCC | 3 cut(s) | 589, 938, 1013 |
| BmiI | GGNNCC | 4 cut(s) | 590, 591, 1015, 1039 |
| BmrFI | CCNGG | 4 cut(s) | 285, 396, 408, 528 |
| BmrI | ACTGGG | 2 cut(s) | 342, 1421 |
| BmsI | GCATC | 6 cut(s) | 145, 170, 202, 381, 1252, 1629 |
| BmuI | ACTGGG | 2 cut(s) | 342, 1421 |
| BpiI | GAAGAC | 1 cut(s) | 1185 |
| BpuEI | CTTGAG | 2 cut(s) | 1505, 1512 |
| BsaHI | GRCGYC | 1 cut(s) | 1038 |
| BsaI | GGTCTC | 1 cut(s) | 1051 |
| BsaJI | CCNNGG | 7 cut(s) | 240, 307, 526, 874, 1009, 1041, 1050 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 676, 706 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 585, 722 |
| Bse1I | ACTGG | 3 cut(s) | 337, 782, 1427 |
| BseBI | CCWGG | 4 cut(s) | 285, 396, 408, 528 |
| BseDI | CCNNGG | 7 cut(s) | 240, 307, 526, 874, 1009, 1041, 1050 |
| BseGI | GGATG | 5 cut(s) | 34, 145, 342, 550, 671 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 585, 722 |
| BseMII | CTCAG | 3 cut(s) | 933, 1344, 1478 |
| BseNI | ACTGG | 3 cut(s) | 337, 782, 1427 |
| BseRI | GAGGAG | 1 cut(s) | 537 |
| BseSI | GKGCMC | 1 cut(s) | 766 |
| BseXI | GCAGC | 5 cut(s) | 170, 839, 842, 1277, 1696 |
| BshFI | GGCC | 2 cut(s) | 794, 1365 |
| BshNI | GGYRCC | 1 cut(s) | 1037 |
| BsiHKAI | GWGCWC | 3 cut(s) | 694, 752, 766 |
| BsiHKCI | CYCGRG | 1 cut(s) | 751 |
| BslFI | GGGAC | 4 cut(s) | 554, 602, 892, 999 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 585, 722 |
| BsmAI | GTCTC | 4 cut(s) | 132, 734, 1051, 1515 |
| BsmFI | GGGAC | 4 cut(s) | 554, 602, 892, 999 |
| BsmI | GAATGC | 1 cut(s) | 1279 |
| BsnI | GGCC | 2 cut(s) | 794, 1365 |
| Bso31I | GGTCTC | 1 cut(s) | 1051 |
| BsoBI | CYCGRG | 1 cut(s) | 751 |
| Bsp1286I | GDGCHC | 3 cut(s) | 694, 752, 766 |
| Bsp143I | GATC | 4 cut(s) | 415, 492, 1105, 1653 |
| Bsp19I | CCATGG | 3 cut(s) | 240, 1009, 1050 |
| BspACI | CCGC | 3 cut(s) | 177, 261, 1277 |
| BspANI | GGCC | 2 cut(s) | 794, 1365 |
| BspCNI | CTCAG | 3 cut(s) | 934, 1345, 1477 |
| BspLI | GGNNCC | 4 cut(s) | 590, 591, 1015, 1039 |
| BspMI | ACCTGC | 1 cut(s) | 441 |
| BspPI | GGATC | 3 cut(s) | 410, 1113, 1661 |
| BspT107I | GGYRCC | 1 cut(s) | 1037 |
| BspTNI | GGTCTC | 1 cut(s) | 1051 |
| BsrI | ACTGG | 3 cut(s) | 337, 782, 1427 |
| BssECI | CCNNGG | 7 cut(s) | 240, 307, 526, 874, 1009, 1041, 1050 |
| BssMI | GATC | 4 cut(s) | 415, 492, 1105, 1653 |
| BssNI | GRCGYC | 1 cut(s) | 1038 |
| BssSI | CACGAG | 1 cut(s) | 687 |
| BssT1I | CCWWGG | 6 cut(s) | 240, 307, 874, 1009, 1041, 1050 |
| Bst2BI | CACGAG | 1 cut(s) | 687 |
| Bst2UI | CCWGG | 4 cut(s) | 285, 396, 408, 528 |
| Bst4CI | ACNGT | 1 cut(s) | 1175 |
| Bst6I | CTCTTC | 3 cut(s) | 819, 1316, 1643 |
| BstACI | GRCGYC | 1 cut(s) | 1038 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 433 |
| BstC8I | GCNNGC | 3 cut(s) | 363, 804, 1146 |
| BstDEI | CTNAG | 4 cut(s) | 744, 942, 1353, 1464 |
| BstDSI | CCRYGG | 3 cut(s) | 240, 1009, 1050 |
| BstF5I | GGATG | 5 cut(s) | 34, 145, 342, 550, 671 |
| BstH2I | RGCGCY | 1 cut(s) | 1041 |
| BstHHI | GCGC | 1 cut(s) | 1040 |
| BstKTI | GATC | 4 cut(s) | 418, 495, 1108, 1656 |
| BstMAI | GTCTC | 4 cut(s) | 132, 734, 1051, 1515 |
| BstMBI | GATC | 4 cut(s) | 415, 492, 1105, 1653 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 433, 1666 |
| BstNI | CCWGG | 4 cut(s) | 285, 396, 408, 528 |
| BstNSI | RCATGY | 2 cut(s) | 806, 1442 |
| BstSCI | CCNGG | 4 cut(s) | 283, 394, 406, 526 |
| BstSFI | CTRYAG | 1 cut(s) | 1171 |
| BstSLI | GKGCMC | 1 cut(s) | 766 |
| BstV1I | GCAGC | 5 cut(s) | 170, 839, 842, 1277, 1696 |
| BstV2I | GAAGAC | 1 cut(s) | 1185 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 930, 1434 |
| BsuI | GTATCC | 1 cut(s) | 305 |
| BsuRI | GGCC | 2 cut(s) | 794, 1365 |
| BtgI | CCRYGG | 3 cut(s) | 240, 1009, 1050 |
| BtsCI | GGATG | 5 cut(s) | 34, 145, 342, 550, 671 |
| BtsI | GCAGTG | 2 cut(s) | 797, 1710 |
| BtsIMutI | CAGTG | 5 cut(s) | 789, 797, 1003, 1180, 1710 |
| BveI | ACCTGC | 1 cut(s) | 441 |
| Cac8I | GCNNGC | 3 cut(s) | 363, 804, 1146 |
| CaiI | CAGNNNCTG | 1 cut(s) | 433 |
| CfoI | GCGC | 1 cut(s) | 1040 |
| Cfr13I | GGNCC | 3 cut(s) | 589, 938, 1013 |
| Csp6I | GTAC | 5 cut(s) | 330, 430, 841, 1204, 1221 |
| CviAII | CATG | 9 cut(s) | 165, 241, 358, 439, 803, 1010, 1051, 1387, 1439 |
| CviQI | GTAC | 5 cut(s) | 330, 430, 841, 1204, 1221 |
| DdeI | CTNAG | 4 cut(s) | 744, 942, 1353, 1464 |
| DinI | GGCGCC | 1 cut(s) | 1039 |
| DpnI | GATC | 4 cut(s) | 417, 494, 1107, 1655 |
| DpnII | GATC | 4 cut(s) | 415, 492, 1105, 1653 |
| DriI | GACNNNNNGTC | 2 cut(s) | 467, 1515 |
| EaeI | YGGCCR | 1 cut(s) | 1363 |
| Eam1104I | CTCTTC | 3 cut(s) | 819, 1316, 1643 |
| Eam1105I | GACNNNNNGTC | 2 cut(s) | 467, 1515 |
| EarI | CTCTTC | 3 cut(s) | 819, 1316, 1643 |
| Ecl136II | GAGCTC | 1 cut(s) | 750 |
| Eco130I | CCWWGG | 6 cut(s) | 240, 307, 874, 1009, 1041, 1050 |
| Eco147I | AGGCCT | 1 cut(s) | 794 |
| Eco24I | GRGCYC | 1 cut(s) | 752 |
| Eco31I | GGTCTC | 1 cut(s) | 1051 |
| Eco32I | GATATC | 2 cut(s) | 401, 985 |
| Eco47I | GGWCC | 3 cut(s) | 589, 938, 1013 |
| Eco53kI | GAGCTC | 1 cut(s) | 750 |
| Eco57I | CTGAAG | 3 cut(s) | 705, 1529, 1701 |
| Eco88I | CYCGRG | 1 cut(s) | 751 |
| EcoICRI | GAGCTC | 1 cut(s) | 750 |
| EcoO109I | RGGNCCY | 1 cut(s) | 589 |
| EcoRII | CCWGG | 4 cut(s) | 283, 394, 406, 526 |
| EcoRV | GATATC | 2 cut(s) | 401, 985 |
| EcoT14I | CCWWGG | 6 cut(s) | 240, 307, 874, 1009, 1041, 1050 |
| EcoT22I | ATGCAT | 1 cut(s) | 170 |
| EcoT38I | GRGCYC | 1 cut(s) | 752 |
| EgeI | GGCGCC | 1 cut(s) | 1039 |
| EheI | GGCGCC | 1 cut(s) | 1039 |
| ErhI | CCWWGG | 6 cut(s) | 240, 307, 874, 1009, 1041, 1050 |
| FaeI | CATG | 9 cut(s) | 168, 244, 361, 442, 806, 1013, 1054, 1390, 1442 |
| FaqI | GGGAC | 4 cut(s) | 554, 602, 892, 999 |
| FatI | CATG | 9 cut(s) | 164, 240, 357, 438, 802, 1009, 1050, 1386, 1438 |
| FauNDI | CATATG | 1 cut(s) | 616 |
| FblI | GTMKAC | 2 cut(s) | 384, 1664 |
| Fnu4HI | GCNGC | 7 cut(s) | 6, 159, 828, 831, 1278, 1291, 1685 |
| FokI | GGATG | 5 cut(s) | 21, 152, 349, 537, 658 |
| FriOI | GRGCYC | 1 cut(s) | 752 |
| Fsp4HI | GCNGC | 7 cut(s) | 6, 159, 828, 831, 1278, 1291, 1685 |
| FspBI | CTAG | 3 cut(s) | 195, 678, 1218 |
| GlaI | GCGC | 1 cut(s) | 1039 |
| GluI | GCNGC | 7 cut(s) | 6, 159, 828, 831, 1278, 1291, 1685 |
| HaeII | RGCGCY | 1 cut(s) | 1041 |
| HaeIII | GGCC | 2 cut(s) | 794, 1365 |
| HhaI | GCGC | 1 cut(s) | 1040 |
| Hin1I | GRCGYC | 1 cut(s) | 1038 |
| Hin1II | CATG | 9 cut(s) | 168, 244, 361, 442, 806, 1013, 1054, 1390, 1442 |
| Hin6I | GCGC | 1 cut(s) | 1038 |
| HinP1I | GCGC | 1 cut(s) | 1038 |
| HincII | GTYRAC | 1 cut(s) | 476 |
| HindII | GTYRAC | 1 cut(s) | 476 |
| HinfI | GANTC | 3 cut(s) | 107, 236, 811 |
| HphI | GGTGA | 2 cut(s) | 221, 480 |
| Hpy166II | GTNNAC | 5 cut(s) | 385, 476, 764, 787, 1665 |
| Hpy188I | TCNGA | 6 cut(s) | 45, 154, 810, 823, 1632, 1720 |
| Hpy188III | TCNNGA | 6 cut(s) | 941, 1099, 1121, 1259, 1520, 1529 |
| Hpy8I | GTNNAC | 5 cut(s) | 385, 476, 764, 787, 1665 |
| HpyAV | CCTTC | 6 cut(s) | 59, 121, 729, 1096, 1127, 1553 |
| HpyCH4III | ACNGT | 1 cut(s) | 1175 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 433, 1666 |
| HpyF3I | CTNAG | 4 cut(s) | 744, 942, 1353, 1464 |
| Hsp92I | GRCGYC | 1 cut(s) | 1038 |
| Hsp92II | CATG | 9 cut(s) | 168, 244, 361, 442, 806, 1013, 1054, 1390, 1442 |
| HspAI | GCGC | 1 cut(s) | 1038 |
| KasI | GGCGCC | 1 cut(s) | 1037 |
| KflI | GGGWCCC | 1 cut(s) | 589 |
| Kzo9I | GATC | 4 cut(s) | 415, 492, 1105, 1653 |
| LmnI | GCTCC | 4 cut(s) | 13, 697, 736, 811 |
| Lsp1109I | GCAGC | 5 cut(s) | 170, 839, 842, 1277, 1696 |
| LweI | GCATC | 6 cut(s) | 145, 170, 202, 381, 1252, 1629 |
| MaeI | CTAG | 3 cut(s) | 195, 678, 1218 |
| MaeIII | GTNAC | 4 cut(s) | 680, 1076, 1467, 1507 |
| MalI | GATC | 4 cut(s) | 417, 494, 1107, 1655 |
| MboI | GATC | 4 cut(s) | 415, 492, 1105, 1653 |
| MboII | GAAGA | 7 cut(s) | 74, 806, 1015, 1190, 1303, 1660, 1709 |
| MhlI | GDGCHC | 3 cut(s) | 694, 752, 766 |
| MluCI | AATT | 8 cut(s) | 14, 520, 664, 904, 988, 1538, 1576, 1700 |
| Mly113I | GGCGCC | 1 cut(s) | 1038 |
| MlyI | GAGTC | 2 cut(s) | 116, 805 |
| MmeI | TCCRAC | 3 cut(s) | 278, 833, 1154 |
| Mph1103I | ATGCAT | 1 cut(s) | 170 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1568 |
| MseI | TTAA | 4 cut(s) | 911, 1200, 1323, 1377 |
| MslI | CAYNNNNRTG | 1 cut(s) | 555 |
| MspR9I | CCNGG | 4 cut(s) | 285, 396, 408, 528 |
| Mva1269I | GAATGC | 1 cut(s) | 1279 |
| MvaI | CCWGG | 4 cut(s) | 285, 396, 408, 528 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 433, 1666 |
| NarI | GGCGCC | 1 cut(s) | 1038 |
| NcoI | CCATGG | 3 cut(s) | 240, 1009, 1050 |
| NdeI | CATATG | 1 cut(s) | 616 |
| NdeII | GATC | 4 cut(s) | 415, 492, 1105, 1653 |
| NlaIII | CATG | 9 cut(s) | 168, 244, 361, 442, 806, 1013, 1054, 1390, 1442 |
| NlaIV | GGNNCC | 4 cut(s) | 590, 591, 1015, 1039 |
| NmuCI | GTSAC | 2 cut(s) | 1076, 1507 |
| NsiI | ATGCAT | 1 cut(s) | 170 |
| NspI | RCATGY | 2 cut(s) | 806, 1442 |
| PaeI | GCATGC | 1 cut(s) | 806 |
| PaeR7I | CTCGAG | 1 cut(s) | 751 |
| PceI | AGGCCT | 1 cut(s) | 794 |
| PctI | GAATGC | 1 cut(s) | 1279 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1568 |
| PfeI | GAWTC | 1 cut(s) | 236 |
| PkrI | GCNGC | 7 cut(s) | 7, 160, 829, 832, 1279, 1292, 1686 |
| PleI | GAGTC | 2 cut(s) | 115, 805 |
| PluTI | GGCGCC | 1 cut(s) | 1041 |
| PpsI | GAGTC | 2 cut(s) | 115, 805 |
| PpuMI | RGGWCCY | 1 cut(s) | 589 |
| Psp124BI | GAGCTC | 1 cut(s) | 752 |
| Psp5II | RGGWCCY | 1 cut(s) | 589 |
| Psp6I | CCWGG | 4 cut(s) | 283, 394, 406, 526 |
| PspGI | CCWGG | 4 cut(s) | 283, 394, 406, 526 |
| PspN4I | GGNNCC | 4 cut(s) | 590, 591, 1015, 1039 |
| PspPI | GGNCC | 3 cut(s) | 589, 938, 1013 |
| PspPPI | RGGWCCY | 1 cut(s) | 589 |
| PspXI | VCTCGAGB | 1 cut(s) | 751 |
| PstNI | CAGNNNCTG | 1 cut(s) | 433 |
| RsaI | GTAC | 5 cut(s) | 331, 431, 842, 1205, 1222 |
| RsaNI | GTAC | 5 cut(s) | 330, 430, 841, 1204, 1221 |
| RseI | CAYNNNNRTG | 1 cut(s) | 555 |
| SacI | GAGCTC | 1 cut(s) | 752 |
| SaqAI | TTAA | 4 cut(s) | 911, 1200, 1323, 1377 |
| SatI | GCNGC | 7 cut(s) | 6, 159, 828, 831, 1278, 1291, 1685 |
| Sau3AI | GATC | 4 cut(s) | 415, 492, 1105, 1653 |
| Sau96I | GGNCC | 3 cut(s) | 589, 938, 1013 |
| ScaI | AGTACT | 2 cut(s) | 331, 1222 |
| SchI | GAGTC | 2 cut(s) | 116, 805 |
| ScrFI | CCNGG | 4 cut(s) | 285, 396, 408, 528 |
| SduI | GDGCHC | 3 cut(s) | 694, 752, 766 |
| SfaNI | GCATC | 6 cut(s) | 145, 170, 202, 381, 1252, 1629 |
| SfcI | CTRYAG | 1 cut(s) | 1171 |
| SfoI | GGCGCC | 1 cut(s) | 1039 |
| Sfr274I | CTCGAG | 1 cut(s) | 751 |
| SinI | GGWCC | 3 cut(s) | 589, 938, 1013 |
| SlaI | CTCGAG | 1 cut(s) | 751 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 555 |
| SmlI | CTYRAG | 3 cut(s) | 751, 1484, 1527 |
| SmoI | CTYRAG | 3 cut(s) | 751, 1484, 1527 |
| SphI | GCATGC | 1 cut(s) | 806 |
| Sse9I | AATT | 8 cut(s) | 14, 520, 664, 904, 988, 1538, 1576, 1700 |
| SseBI | AGGCCT | 1 cut(s) | 794 |
| SsiI | CCGC | 3 cut(s) | 177, 261, 1277 |
| SspDI | GGCGCC | 1 cut(s) | 1037 |
| SspI | AATATT | 1 cut(s) | 1599 |
| SspMI | CTAG | 3 cut(s) | 195, 678, 1218 |
| SstI | GAGCTC | 1 cut(s) | 752 |
| StuI | AGGCCT | 1 cut(s) | 794 |
| StyD4I | CCNGG | 4 cut(s) | 283, 394, 406, 526 |
| StyI | CCWWGG | 6 cut(s) | 240, 307, 874, 1009, 1041, 1050 |
| TaaI | ACNGT | 1 cut(s) | 1175 |
| TaqI | TCGA | 3 cut(s) | 752, 1519, 1554 |
| TaqII | GACCGA | 1 cut(s) | 461 |
| TasI | AATT | 8 cut(s) | 14, 520, 664, 904, 988, 1538, 1576, 1700 |
| TatI | WGTACW | 3 cut(s) | 329, 1203, 1220 |
| TauI | GCSGC | 1 cut(s) | 1280 |
| TfiI | GAWTC | 1 cut(s) | 236 |
| Tru1I | TTAA | 4 cut(s) | 911, 1200, 1323, 1377 |
| Tru9I | TTAA | 4 cut(s) | 911, 1200, 1323, 1377 |
| TscAI | CASTG | 5 cut(s) | 789, 804, 1003, 1180, 1717 |
| TseFI | GTSAC | 2 cut(s) | 1076, 1507 |
| TseI | GCWGC | 6 cut(s) | 5, 158, 827, 830, 1290, 1684 |
| Tsp45I | GTSAC | 2 cut(s) | 1076, 1507 |
| TspDTI | ATGAA | 5 cut(s) | 249, 1178, 1509, 1572, 1635 |
| TspGWI | ACGGA | 2 cut(s) | 684, 838 |
| TspRI | CASTG | 5 cut(s) | 789, 804, 1003, 1180, 1717 |
| VneI | GTGCAC | 1 cut(s) | 762 |
| VpaK11BI | GGWCC | 3 cut(s) | 589, 938, 1013 |
| XapI | RAATTY | 1 cut(s) | 1538 |
| XceI | RCATGY | 2 cut(s) | 806, 1442 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 881 |
| XhoI | CTCGAG | 1 cut(s) | 751 |
| XmiI | GTMKAC | 2 cut(s) | 384, 1664 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1568 |
| XspI | CTAG | 3 cut(s) | 195, 678, 1218 |
| ZrmI | AGTACT | 2 cut(s) | 331, 1222 |
| Zsp2I | ATGCAT | 1 cut(s) | 170 |