ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 711 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 547 |
| AccIII | TCCGGA | 1 cut(s) | 306 |
| AclWI | GGATC | 5 cut(s) | 253, 324, 376, 756, 1012 |
| AcoI | YGGCCR | 2 cut(s) | 194, 460 |
| AcsI | RAATTY | 3 cut(s) | 142, 257, 447 |
| AcyI | GRCGYC | 2 cut(s) | 225, 640 |
| AfaI | GTAC | 3 cut(s) | 154, 166, 961 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 203, 313, 418, 437, 547, 685 |
| AgsI | TTSAA | 6 cut(s) | 53, 390, 445, 625, 859, 1120 |
| AjnI | CCWGG | 4 cut(s) | 155, 241, 880, 948 |
| AluBI | AGCT | 8 cut(s) | 128, 425, 530, 535, 590, 707, 851, 1109 |
| AluI | AGCT | 8 cut(s) | 128, 425, 530, 535, 590, 707, 851, 1109 |
| Alw26I | GTCTC | 2 cut(s) | 110, 903 |
| AlwI | GGATC | 5 cut(s) | 253, 324, 376, 756, 1012 |
| Aor13HI | TCCGGA | 1 cut(s) | 306 |
| AoxI | GGCC | 6 cut(s) | 37, 194, 409, 460, 946, 1058 |
| ApeKI | GCWGC | 6 cut(s) | 125, 173, 422, 499, 553, 595 |
| ApoI | RAATTY | 3 cut(s) | 142, 257, 447 |
| AseI | ATTAAT | 1 cut(s) | 545 |
| AspA2I | CCTAGG | 1 cut(s) | 413 |
| AspS9I | GGNCC | 5 cut(s) | 410, 428, 568, 676, 884 |
| AsuHPI | GGTGA | 2 cut(s) | 380, 1137 |
| AvaII | GGWCC | 4 cut(s) | 428, 568, 676, 884 |
| AvrII | CCTAGG | 1 cut(s) | 413 |
| BbvI | GCAGC | 6 cut(s) | 137, 160, 434, 511, 540, 607 |
| BccI | CCATC | 2 cut(s) | 56, 884 |
| BceAI | ACGGC | 1 cut(s) | 702 |
| BciT130I | CCWGG | 4 cut(s) | 157, 243, 882, 950 |
| BcoDI | GTCTC | 2 cut(s) | 110, 903 |
| BfaI | CTAG | 5 cut(s) | 203, 414, 752, 1106, 1158 |
| BfmI | CTRYAG | 1 cut(s) | 987 |
| BisI | GCNGC | 6 cut(s) | 126, 174, 423, 500, 554, 596 |
| BlnI | CCTAGG | 1 cut(s) | 413 |
| BlpI | GCTNAGC | 1 cut(s) | 531 |
| BlsI | GCNGC | 6 cut(s) | 127, 175, 424, 501, 555, 597 |
| Bme1390I | CCNGG | 4 cut(s) | 157, 243, 882, 950 |
| Bme18I | GGWCC | 4 cut(s) | 428, 568, 676, 884 |
| BmgT120I | GGNCC | 5 cut(s) | 410, 428, 568, 676, 884 |
| BmiI | GGNNCC | 3 cut(s) | 305, 677, 1035 |
| BmrFI | CCNGG | 4 cut(s) | 157, 243, 882, 950 |
| BmrI | ACTGGG | 1 cut(s) | 984 |
| BmsI | GCATC | 4 cut(s) | 607, 852, 874, 988 |
| BmuI | ACTGGG | 1 cut(s) | 984 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 531 |
| BpuEI | CTTGAG | 1 cut(s) | 42 |
| BsaHI | GRCGYC | 2 cut(s) | 225, 640 |
| BsaJI | CCNNGG | 2 cut(s) | 353, 413 |
| BsaWI | WCCGGW | 2 cut(s) | 306, 886 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 203, 313, 418, 437, 547, 685 |
| Bse118I | RCCGGY | 1 cut(s) | 462 |
| Bse1I | ACTGG | 4 cut(s) | 274, 463, 742, 979 |
| BseAI | TCCGGA | 1 cut(s) | 306 |
| BseBI | CCWGG | 4 cut(s) | 157, 243, 882, 950 |
| BseDI | CCNNGG | 2 cut(s) | 353, 413 |
| BseGI | GGATG | 3 cut(s) | 289, 583, 895 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 203, 313, 418, 437, 547, 685 |
| BseMII | CTCAG | 1 cut(s) | 105 |
| BseNI | ACTGG | 4 cut(s) | 274, 463, 742, 979 |
| BseRI | GAGGAG | 2 cut(s) | 336, 497 |
| BseX3I | CGGCCG | 1 cut(s) | 194 |
| BseXI | GCAGC | 6 cut(s) | 137, 160, 434, 511, 540, 607 |
| BseYI | CCCAGC | 1 cut(s) | 131 |
| BsgI | GTGCAG | 2 cut(s) | 92, 321 |
| Bsh1285I | CGRYCG | 1 cut(s) | 197 |
| BshFI | GGCC | 6 cut(s) | 39, 196, 411, 462, 948, 1060 |
| BsiEI | CGRYCG | 1 cut(s) | 197 |
| BsiSI | CCGG | 4 cut(s) | 307, 463, 566, 887 |
| BslFI | GGGAC | 1 cut(s) | 689 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 203, 313, 418, 437, 547, 685 |
| BsmAI | GTCTC | 2 cut(s) | 110, 903 |
| BsmFI | GGGAC | 1 cut(s) | 689 |
| BsnI | GGCC | 6 cut(s) | 39, 196, 411, 462, 948, 1060 |
| Bsp13I | TCCGGA | 1 cut(s) | 306 |
| Bsp143I | GATC | 7 cut(s) | 245, 316, 326, 381, 647, 748, 1017 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 531 |
| Bsp19I | CCATGG | 1 cut(s) | 353 |
| BspANI | GGCC | 6 cut(s) | 39, 196, 411, 462, 948, 1060 |
| BspCNI | CTCAG | 1 cut(s) | 106 |
| BspEI | TCCGGA | 1 cut(s) | 306 |
| BspHI | TCATGA | 1 cut(s) | 228 |
| BspLI | GGNNCC | 3 cut(s) | 305, 677, 1035 |
| BspPI | GGATC | 5 cut(s) | 253, 324, 376, 756, 1012 |
| BsrFI | RCCGGY | 1 cut(s) | 462 |
| BsrI | ACTGG | 4 cut(s) | 274, 463, 742, 979 |
| BssAI | RCCGGY | 1 cut(s) | 462 |
| BssECI | CCNNGG | 2 cut(s) | 353, 413 |
| BssMI | GATC | 7 cut(s) | 245, 316, 326, 381, 647, 748, 1017 |
| BssNI | GRCGYC | 2 cut(s) | 225, 640 |
| BssT1I | CCWWGG | 2 cut(s) | 353, 413 |
| Bst2UI | CCWGG | 4 cut(s) | 157, 243, 882, 950 |
| Bst4CI | ACNGT | 3 cut(s) | 281, 796, 964 |
| Bst6I | CTCTTC | 1 cut(s) | 906 |
| BstACI | GRCGYC | 2 cut(s) | 225, 640 |
| BstC8I | GCNNGC | 1 cut(s) | 705 |
| BstDEI | CTNAG | 3 cut(s) | 114, 323, 531 |
| BstDSI | CCRYGG | 1 cut(s) | 353 |
| BstF5I | GGATG | 3 cut(s) | 289, 583, 895 |
| BstKTI | GATC | 7 cut(s) | 248, 319, 329, 384, 650, 751, 1020 |
| BstMAI | GTCTC | 2 cut(s) | 110, 903 |
| BstMBI | GATC | 7 cut(s) | 245, 316, 326, 381, 647, 748, 1017 |
| BstMCI | CGRYCG | 1 cut(s) | 197 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 562 |
| BstNI | CCWGG | 4 cut(s) | 157, 243, 882, 950 |
| BstSCI | CCNGG | 4 cut(s) | 155, 241, 880, 948 |
| BstSFI | CTRYAG | 1 cut(s) | 987 |
| BstV1I | GCAGC | 6 cut(s) | 137, 160, 434, 511, 540, 607 |
| BstX2I | RGATCY | 3 cut(s) | 316, 381, 748 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 19 |
| BstYI | RGATCY | 3 cut(s) | 316, 381, 748 |
| BstZI | CGGCCG | 1 cut(s) | 194 |
| BsuRI | GGCC | 6 cut(s) | 39, 196, 411, 462, 948, 1060 |
| BtgI | CCRYGG | 1 cut(s) | 353 |
| BtsCI | GGATG | 3 cut(s) | 289, 583, 895 |
| BtsIMutI | CAGTG | 2 cut(s) | 456, 969 |
| Cac8I | GCNNGC | 1 cut(s) | 705 |
| CciI | TCATGA | 1 cut(s) | 228 |
| Cfr10I | RCCGGY | 1 cut(s) | 462 |
| Cfr13I | GGNCC | 5 cut(s) | 410, 428, 568, 676, 884 |
| CseI | GACGC | 3 cut(s) | 214, 491, 629 |
| CsiI | ACCWGGT | 1 cut(s) | 155 |
| Csp6I | GTAC | 3 cut(s) | 153, 165, 960 |
| CviAII | CATG | 5 cut(s) | 229, 312, 354, 506, 1177 |
| CviQI | GTAC | 3 cut(s) | 153, 165, 960 |
| DdeI | CTNAG | 3 cut(s) | 114, 323, 531 |
| DpnI | GATC | 7 cut(s) | 247, 318, 328, 383, 649, 750, 1019 |
| DpnII | GATC | 7 cut(s) | 245, 316, 326, 381, 647, 748, 1017 |
| EaeI | YGGCCR | 2 cut(s) | 194, 460 |
| EagI | CGGCCG | 1 cut(s) | 194 |
| Eam1104I | CTCTTC | 1 cut(s) | 906 |
| EarI | CTCTTC | 1 cut(s) | 906 |
| EclXI | CGGCCG | 1 cut(s) | 194 |
| Eco130I | CCWWGG | 2 cut(s) | 353, 413 |
| Eco147I | AGGCCT | 2 cut(s) | 39, 1060 |
| Eco47I | GGWCC | 4 cut(s) | 428, 568, 676, 884 |
| Eco52I | CGGCCG | 1 cut(s) | 194 |
| EcoRI | GAATTC | 1 cut(s) | 142 |
| EcoRII | CCWGG | 4 cut(s) | 155, 241, 880, 948 |
| EcoT14I | CCWWGG | 2 cut(s) | 353, 413 |
| EcoT22I | ATGCAT | 1 cut(s) | 867 |
| ErhI | CCWWGG | 2 cut(s) | 353, 413 |
| FaeI | CATG | 5 cut(s) | 232, 315, 357, 509, 1180 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 519, 551 |
| FaqI | GGGAC | 1 cut(s) | 689 |
| FatI | CATG | 5 cut(s) | 228, 311, 353, 505, 1176 |
| Fnu4HI | GCNGC | 6 cut(s) | 126, 174, 423, 500, 554, 596 |
| FokI | GGATG | 3 cut(s) | 276, 590, 902 |
| Fsp4HI | GCNGC | 6 cut(s) | 126, 174, 423, 500, 554, 596 |
| FspBI | CTAG | 5 cut(s) | 203, 414, 752, 1106, 1158 |
| GluI | GCNGC | 6 cut(s) | 126, 174, 423, 500, 554, 596 |
| GsaI | CCCAGC | 1 cut(s) | 135 |
| HaeIII | GGCC | 6 cut(s) | 39, 196, 411, 462, 948, 1060 |
| HapII | CCGG | 4 cut(s) | 307, 463, 566, 887 |
| HgaI | GACGC | 3 cut(s) | 214, 491, 629 |
| Hin1I | GRCGYC | 2 cut(s) | 225, 640 |
| Hin1II | CATG | 5 cut(s) | 232, 315, 357, 509, 1180 |
| HincII | GTYRAC | 1 cut(s) | 644 |
| HindII | GTYRAC | 1 cut(s) | 644 |
| HindIII | AAGCTT | 3 cut(s) | 533, 588, 849 |
| HinfI | GANTC | 4 cut(s) | 16, 199, 992, 1116 |
| HpaII | CCGG | 4 cut(s) | 307, 463, 566, 887 |
| HphI | GGTGA | 2 cut(s) | 380, 1137 |
| Hpy166II | GTNNAC | 1 cut(s) | 644 |
| Hpy188I | TCNGA | 5 cut(s) | 115, 783, 832, 1017, 1051 |
| Hpy188III | TCNNGA | 6 cut(s) | 59, 229, 307, 651, 752, 859 |
| Hpy8I | GTNNAC | 1 cut(s) | 644 |
| HpyAV | CCTTC | 3 cut(s) | 163, 1024, 1159 |
| HpyCH4III | ACNGT | 3 cut(s) | 281, 796, 964 |
| HpyCH4V | TGCA | 7 cut(s) | 73, 176, 338, 395, 595, 865, 934 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 562 |
| HpyF3I | CTNAG | 3 cut(s) | 114, 323, 531 |
| Hsp92I | GRCGYC | 2 cut(s) | 225, 640 |
| Hsp92II | CATG | 5 cut(s) | 232, 315, 357, 509, 1180 |
| Kpn2I | TCCGGA | 1 cut(s) | 306 |
| Kzo9I | GATC | 7 cut(s) | 245, 316, 326, 381, 647, 748, 1017 |
| LmnI | GCTCC | 1 cut(s) | 133 |
| Lsp1109I | GCAGC | 6 cut(s) | 137, 160, 434, 511, 540, 607 |
| LweI | GCATC | 4 cut(s) | 607, 852, 874, 988 |
| MabI | ACCWGGT | 1 cut(s) | 155 |
| MaeI | CTAG | 5 cut(s) | 203, 414, 752, 1106, 1158 |
| MaeIII | GTNAC | 2 cut(s) | 296, 790 |
| MalI | GATC | 7 cut(s) | 247, 318, 328, 383, 649, 750, 1019 |
| MboI | GATC | 7 cut(s) | 245, 316, 326, 381, 647, 748, 1017 |
| MboII | GAAGA | 5 cut(s) | 311, 465, 893, 901, 974 |
| MflI | RGATCY | 3 cut(s) | 316, 381, 748 |
| MluCI | AATT | 8 cut(s) | 28, 97, 142, 257, 447, 518, 542, 1089 |
| MlyI | GAGTC | 1 cut(s) | 208 |
| MmeI | TCCRAC | 1 cut(s) | 1020 |
| MnlI | CCTC | 9 cut(s) | 29, 247, 357, 411, 475, 478, 748, 1050, 1143 |
| Mph1103I | ATGCAT | 1 cut(s) | 867 |
| MroI | TCCGGA | 1 cut(s) | 306 |
| MseI | TTAA | 7 cut(s) | 42, 375, 545, 606, 665, 771, 843 |
| MslI | CAYNNNNRTG | 3 cut(s) | 219, 294, 939 |
| MspA1I | CMGCKG | 1 cut(s) | 425 |
| MspI | CCGG | 4 cut(s) | 307, 463, 566, 887 |
| MspR9I | CCNGG | 4 cut(s) | 157, 243, 882, 950 |
| MvaI | CCWGG | 4 cut(s) | 157, 243, 882, 950 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 562 |
| NcoI | CCATGG | 1 cut(s) | 353 |
| NdeII | GATC | 7 cut(s) | 245, 316, 326, 381, 647, 748, 1017 |
| NlaIII | CATG | 5 cut(s) | 232, 315, 357, 509, 1180 |
| NlaIV | GGNNCC | 3 cut(s) | 305, 677, 1035 |
| NmeAIII | GCCGAG | 1 cut(s) | 222 |
| NmuCI | GTSAC | 1 cut(s) | 296 |
| NsiI | ATGCAT | 1 cut(s) | 867 |
| PagI | TCATGA | 1 cut(s) | 228 |
| PceI | AGGCCT | 2 cut(s) | 39, 1060 |
| PfeI | GAWTC | 3 cut(s) | 16, 992, 1116 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 547 |
| PfoI | TCCNGGA | 1 cut(s) | 880 |
| PkrI | GCNGC | 6 cut(s) | 127, 175, 424, 501, 555, 597 |
| PleI | GAGTC | 1 cut(s) | 207 |
| PpsI | GAGTC | 1 cut(s) | 207 |
| PshBI | ATTAAT | 1 cut(s) | 545 |
| PsiI | TTATAA | 1 cut(s) | 711 |
| Psp6I | CCWGG | 4 cut(s) | 155, 241, 880, 948 |
| PspFI | CCCAGC | 1 cut(s) | 131 |
| PspGI | CCWGG | 4 cut(s) | 155, 241, 880, 948 |
| PspN4I | GGNNCC | 3 cut(s) | 305, 677, 1035 |
| PspPI | GGNCC | 5 cut(s) | 410, 428, 568, 676, 884 |
| PsuI | RGATCY | 3 cut(s) | 316, 381, 748 |
| PvuII | CAGCTG | 1 cut(s) | 425 |
| RsaI | GTAC | 3 cut(s) | 154, 166, 961 |
| RsaNI | GTAC | 3 cut(s) | 153, 165, 960 |
| RseI | CAYNNNNRTG | 3 cut(s) | 219, 294, 939 |
| SaqAI | TTAA | 7 cut(s) | 42, 375, 545, 606, 665, 771, 843 |
| SatI | GCNGC | 6 cut(s) | 126, 174, 423, 500, 554, 596 |
| Sau3AI | GATC | 7 cut(s) | 245, 316, 326, 381, 647, 748, 1017 |
| Sau96I | GGNCC | 5 cut(s) | 410, 428, 568, 676, 884 |
| SchI | GAGTC | 1 cut(s) | 208 |
| ScrFI | CCNGG | 4 cut(s) | 157, 243, 882, 950 |
| SexAI | ACCWGGT | 1 cut(s) | 155 |
| SfaNI | GCATC | 4 cut(s) | 607, 852, 874, 988 |
| SfcI | CTRYAG | 1 cut(s) | 987 |
| SinI | GGWCC | 4 cut(s) | 428, 568, 676, 884 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 219, 294, 939 |
| SmlI | CTYRAG | 1 cut(s) | 57 |
| SmoI | CTYRAG | 1 cut(s) | 57 |
| Sse9I | AATT | 8 cut(s) | 28, 97, 142, 257, 447, 518, 542, 1089 |
| SseBI | AGGCCT | 2 cut(s) | 39, 1060 |
| SspMI | CTAG | 5 cut(s) | 203, 414, 752, 1106, 1158 |
| StuI | AGGCCT | 2 cut(s) | 39, 1060 |
| StyD4I | CCNGG | 4 cut(s) | 155, 241, 880, 948 |
| StyI | CCWWGG | 2 cut(s) | 353, 413 |
| TaaI | ACNGT | 3 cut(s) | 281, 796, 964 |
| TaqI | TCGA | 1 cut(s) | 34 |
| TasI | AATT | 8 cut(s) | 28, 97, 142, 257, 447, 518, 542, 1089 |
| TfiI | GAWTC | 3 cut(s) | 16, 992, 1116 |
| Tru1I | TTAA | 7 cut(s) | 42, 375, 545, 606, 665, 771, 843 |
| Tru9I | TTAA | 7 cut(s) | 42, 375, 545, 606, 665, 771, 843 |
| TscAI | CASTG | 2 cut(s) | 463, 969 |
| TseFI | GTSAC | 1 cut(s) | 296 |
| TseI | GCWGC | 6 cut(s) | 125, 173, 422, 499, 553, 595 |
| Tsp45I | GTSAC | 1 cut(s) | 296 |
| TspDTI | ATGAA | 9 cut(s) | 71, 91, 155, 440, 530, 642, 686, 818, 893 |
| TspGWI | ACGGA | 1 cut(s) | 947 |
| TspRI | CASTG | 2 cut(s) | 463, 969 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 547 |
| VpaK11BI | GGWCC | 4 cut(s) | 428, 568, 676, 884 |
| VspI | ATTAAT | 1 cut(s) | 545 |
| XapI | RAATTY | 3 cut(s) | 142, 257, 447 |
| XbaI | TCTAGA | 1 cut(s) | 751 |
| XmaJI | CCTAGG | 1 cut(s) | 413 |
| XspI | CTAG | 5 cut(s) | 203, 414, 752, 1106, 1158 |
| Zsp2I | ATGCAT | 1 cut(s) | 867 |