ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 1057 |
| AccB1I | GGYRCC | 2 cut(s) | 81, 524 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 977 |
| AciI | CCGC | 7 cut(s) | 15, 220, 229, 250, 369, 387, 463 |
| AclWI | GGATC | 1 cut(s) | 569 |
| AcoI | YGGCCR | 2 cut(s) | 160, 376 |
| AcuI | CTGAAG | 2 cut(s) | 558, 977 |
| AfaI | GTAC | 3 cut(s) | 546, 843, 860 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 977 |
| AgsI | TTSAA | 2 cut(s) | 911, 1088 |
| AjnI | CCWGG | 2 cut(s) | 741, 791 |
| AluBI | AGCT | 4 cut(s) | 107, 138, 830, 1002 |
| AluI | AGCT | 4 cut(s) | 107, 138, 830, 1002 |
| Alw21I | GWGCWC | 1 cut(s) | 424 |
| Alw26I | GTCTC | 4 cut(s) | 150, 294, 488, 1072 |
| AlwI | GGATC | 1 cut(s) | 569 |
| AoxI | GGCC | 5 cut(s) | 35, 160, 226, 340, 376 |
| ApaI | GGGCCC | 1 cut(s) | 39 |
| ApeKI | GCWGC | 2 cut(s) | 135, 623 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 755, 787 |
| AspA2I | CCTAGG | 1 cut(s) | 343 |
| AspS9I | GGNCC | 4 cut(s) | 35, 36, 124, 698 |
| AsuC2I | CCSGG | 1 cut(s) | 159 |
| AsuHPI | GGTGA | 2 cut(s) | 383, 668 |
| AsuII | TTCGAA | 1 cut(s) | 932 |
| AvaII | GGWCC | 2 cut(s) | 124, 698 |
| AvrII | CCTAGG | 1 cut(s) | 343 |
| BaeGI | GKGCMC | 2 cut(s) | 39, 84 |
| BanI | GGYRCC | 2 cut(s) | 81, 524 |
| BanII | GRGCYC | 1 cut(s) | 39 |
| BauI | CACGAG | 1 cut(s) | 297 |
| Bbv12I | GWGCWC | 1 cut(s) | 424 |
| BbvI | GCAGC | 2 cut(s) | 147, 635 |
| BccI | CCATC | 9 cut(s) | 135, 271, 329, 368, 401, 536, 754, 979, 1128 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 275, 309 |
| BciT130I | CCWGG | 2 cut(s) | 743, 793 |
| BcnI | CCSGG | 1 cut(s) | 159 |
| BcoDI | GTCTC | 4 cut(s) | 150, 294, 488, 1072 |
| BfaI | CTAG | 2 cut(s) | 344, 620 |
| BfuAI | ACCTGC | 1 cut(s) | 1057 |
| BisI | GCNGC | 4 cut(s) | 136, 229, 387, 624 |
| BlnI | CCTAGG | 1 cut(s) | 343 |
| BlpI | GCTNAGC | 1 cut(s) | 1140 |
| BlsI | GCNGC | 4 cut(s) | 137, 230, 388, 625 |
| Bme1390I | CCNGG | 3 cut(s) | 159, 743, 793 |
| Bme18I | GGWCC | 2 cut(s) | 124, 698 |
| BmgT120I | GGNCC | 4 cut(s) | 35, 36, 124, 698 |
| BmiI | GGNNCC | 4 cut(s) | 36, 37, 83, 526 |
| BmrFI | CCNGG | 3 cut(s) | 159, 743, 793 |
| BmrI | ACTGGG | 1 cut(s) | 987 |
| BmsI | GCATC | 2 cut(s) | 240, 502 |
| BmuI | ACTGGG | 1 cut(s) | 987 |
| BpmI | CTGGAG | 1 cut(s) | 470 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 1140 |
| Bpu14I | TTCGAA | 1 cut(s) | 932 |
| BpuMI | CCSGG | 1 cut(s) | 159 |
| Bsa29I | ATCGAT | 1 cut(s) | 510 |
| BsaJI | CCNNGG | 8 cut(s) | 30, 157, 223, 343, 390, 641, 741, 792 |
| BsaWI | WCCGGW | 1 cut(s) | 475 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 851, 881 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 977 |
| Bse1I | ACTGG | 2 cut(s) | 658, 982 |
| Bse3DI | GCAATG | 1 cut(s) | 291 |
| BseBI | CCWGG | 2 cut(s) | 743, 793 |
| BseCI | ATCGAT | 1 cut(s) | 510 |
| BseDI | CCNNGG | 8 cut(s) | 30, 157, 223, 343, 390, 641, 741, 792 |
| BseGI | GGATG | 3 cut(s) | 263, 969, 1105 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 977 |
| BseMI | GCAATG | 1 cut(s) | 291 |
| BseMII | CTCAG | 1 cut(s) | 129 |
| BseNI | ACTGG | 2 cut(s) | 658, 982 |
| BseRI | GAGGAG | 3 cut(s) | 191, 194, 230 |
| BseSI | GKGCMC | 2 cut(s) | 39, 84 |
| BseXI | GCAGC | 2 cut(s) | 147, 635 |
| Bsh1285I | CGRYCG | 1 cut(s) | 220 |
| BshFI | GGCC | 5 cut(s) | 37, 162, 228, 342, 378 |
| BshNI | GGYRCC | 2 cut(s) | 81, 524 |
| BshVI | ATCGAT | 1 cut(s) | 510 |
| BsiEI | CGRYCG | 1 cut(s) | 220 |
| BsiHKAI | GWGCWC | 1 cut(s) | 424 |
| BsiSI | CCGG | 3 cut(s) | 159, 476, 701 |
| BslFI | GGGAC | 2 cut(s) | 244, 465 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 977 |
| BsmAI | GTCTC | 4 cut(s) | 150, 294, 488, 1072 |
| BsmBI | CGTCTC | 3 cut(s) | 150, 294, 488 |
| BsmFI | GGGAC | 2 cut(s) | 244, 465 |
| BsnI | GGCC | 5 cut(s) | 37, 162, 228, 342, 378 |
| Bsp119I | TTCGAA | 1 cut(s) | 932 |
| Bsp120I | GGGCCC | 1 cut(s) | 35 |
| Bsp1286I | GDGCHC | 3 cut(s) | 39, 84, 424 |
| Bsp143I | GATC | 3 cut(s) | 271, 561, 630 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 1140 |
| BspACI | CCGC | 7 cut(s) | 15, 220, 229, 250, 369, 387, 463 |
| BspANI | GGCC | 5 cut(s) | 37, 162, 228, 342, 378 |
| BspCNI | CTCAG | 1 cut(s) | 128 |
| BspDI | ATCGAT | 1 cut(s) | 510 |
| BspLI | GGNNCC | 4 cut(s) | 36, 37, 83, 526 |
| BspMI | ACCTGC | 1 cut(s) | 1057 |
| BspPI | GGATC | 1 cut(s) | 569 |
| BspT104I | TTCGAA | 1 cut(s) | 932 |
| BspT107I | GGYRCC | 2 cut(s) | 81, 524 |
| BsrDI | GCAATG | 1 cut(s) | 291 |
| BsrI | ACTGG | 2 cut(s) | 658, 982 |
| BssECI | CCNNGG | 8 cut(s) | 30, 157, 223, 343, 390, 641, 741, 792 |
| BssMI | GATC | 3 cut(s) | 271, 561, 630 |
| BssSI | CACGAG | 1 cut(s) | 297 |
| BssT1I | CCWWGG | 4 cut(s) | 223, 343, 390, 641 |
| Bst2BI | CACGAG | 1 cut(s) | 297 |
| Bst2UI | CCWGG | 2 cut(s) | 743, 793 |
| Bst4CI | ACNGT | 1 cut(s) | 938 |
| Bst6I | CTCTTC | 1 cut(s) | 114 |
| BstBI | TTCGAA | 1 cut(s) | 932 |
| BstC8I | GCNNGC | 1 cut(s) | 214 |
| BstDEI | CTNAG | 4 cut(s) | 115, 611, 890, 1140 |
| BstDSI | CCRYGG | 1 cut(s) | 30 |
| BstF5I | GGATG | 3 cut(s) | 263, 969, 1105 |
| BstKTI | GATC | 3 cut(s) | 274, 564, 633 |
| BstMAI | GTCTC | 4 cut(s) | 150, 294, 488, 1072 |
| BstMBI | GATC | 3 cut(s) | 271, 561, 630 |
| BstMCI | CGRYCG | 1 cut(s) | 220 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 26, 228, 375 |
| BstNI | CCWGG | 2 cut(s) | 743, 793 |
| BstNSI | RCATGY | 1 cut(s) | 8 |
| BstSCI | CCNGG | 3 cut(s) | 157, 741, 791 |
| BstSLI | GKGCMC | 2 cut(s) | 39, 84 |
| BstV1I | GCAGC | 2 cut(s) | 147, 635 |
| BstX2I | RGATCY | 1 cut(s) | 561 |
| BstYI | RGATCY | 1 cut(s) | 561 |
| Bsu15I | ATCGAT | 1 cut(s) | 510 |
| BsuRI | GGCC | 5 cut(s) | 37, 162, 228, 342, 378 |
| BsuTUI | ATCGAT | 1 cut(s) | 510 |
| BtgI | CCRYGG | 1 cut(s) | 30 |
| BtgZI | GCGATG | 1 cut(s) | 217 |
| BtsCI | GGATG | 3 cut(s) | 263, 969, 1105 |
| BtsIMutI | CAGTG | 1 cut(s) | 651 |
| BveI | ACCTGC | 1 cut(s) | 1057 |
| Cac8I | GCNNGC | 1 cut(s) | 214 |
| Cfr13I | GGNCC | 4 cut(s) | 35, 36, 124, 698 |
| ClaI | ATCGAT | 1 cut(s) | 510 |
| CseI | GACGC | 1 cut(s) | 470 |
| Csp6I | GTAC | 3 cut(s) | 545, 842, 859 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 676, 711 |
| CviAII | CATG | 5 cut(s) | 5, 101, 131, 766, 988 |
| CviQI | GTAC | 3 cut(s) | 545, 842, 859 |
| DdeI | CTNAG | 4 cut(s) | 115, 611, 890, 1140 |
| DpnI | GATC | 3 cut(s) | 273, 563, 632 |
| DpnII | GATC | 3 cut(s) | 271, 561, 630 |
| EaeI | YGGCCR | 2 cut(s) | 160, 376 |
| Eam1104I | CTCTTC | 1 cut(s) | 114 |
| EarI | CTCTTC | 1 cut(s) | 114 |
| EciI | GGCGGA | 2 cut(s) | 239, 478 |
| Eco130I | CCWWGG | 4 cut(s) | 223, 343, 390, 641 |
| Eco147I | AGGCCT | 1 cut(s) | 342 |
| Eco24I | GRGCYC | 1 cut(s) | 39 |
| Eco47I | GGWCC | 2 cut(s) | 124, 698 |
| Eco57I | CTGAAG | 2 cut(s) | 558, 977 |
| EcoO109I | RGGNCCY | 1 cut(s) | 35 |
| EcoRII | CCWGG | 2 cut(s) | 741, 791 |
| EcoT14I | CCWWGG | 4 cut(s) | 223, 343, 390, 641 |
| EcoT22I | ATGCAT | 1 cut(s) | 6 |
| EcoT38I | GRGCYC | 1 cut(s) | 39 |
| ErhI | CCWWGG | 4 cut(s) | 223, 343, 390, 641 |
| Esp3I | CGTCTC | 3 cut(s) | 150, 294, 488 |
| FaeI | CATG | 5 cut(s) | 8, 104, 134, 769, 991 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 531, 563 |
| FaqI | GGGAC | 2 cut(s) | 244, 465 |
| FatI | CATG | 5 cut(s) | 4, 100, 130, 765, 987 |
| FauI | CCCGC | 1 cut(s) | 8 |
| Fnu4HI | GCNGC | 4 cut(s) | 136, 229, 387, 624 |
| FokI | GGATG | 3 cut(s) | 250, 976, 1112 |
| FriOI | GRGCYC | 1 cut(s) | 39 |
| Fsp4HI | GCNGC | 4 cut(s) | 136, 229, 387, 624 |
| FspBI | CTAG | 2 cut(s) | 344, 620 |
| GluI | GCNGC | 4 cut(s) | 136, 229, 387, 624 |
| GsuI | CTGGAG | 1 cut(s) | 470 |
| HaeIII | GGCC | 5 cut(s) | 37, 162, 228, 342, 378 |
| HapII | CCGG | 3 cut(s) | 159, 476, 701 |
| HgaI | GACGC | 1 cut(s) | 470 |
| Hin1II | CATG | 5 cut(s) | 8, 104, 134, 769, 991 |
| HindIII | AAGCTT | 1 cut(s) | 105 |
| HinfI | GANTC | 6 cut(s) | 453, 472, 552, 604, 983, 1127 |
| HpaII | CCGG | 3 cut(s) | 159, 476, 701 |
| HphI | GGTGA | 2 cut(s) | 383, 668 |
| Hpy166II | GTNNAC | 2 cut(s) | 545, 755 |
| Hpy188I | TCNGA | 5 cut(s) | 92, 118, 271, 538, 837 |
| Hpy188III | TCNNGA | 3 cut(s) | 275, 487, 1124 |
| Hpy8I | GTNNAC | 2 cut(s) | 545, 755 |
| Hpy99I | CGWCG | 2 cut(s) | 314, 323 |
| HpyAV | CCTTC | 3 cut(s) | 195, 533, 1040 |
| HpyCH4III | ACNGT | 1 cut(s) | 938 |
| HpyCH4V | TGCA | 5 cut(s) | 4, 296, 500, 515, 952 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 26, 228, 375 |
| HpyF3I | CTNAG | 4 cut(s) | 115, 611, 890, 1140 |
| Hsp92II | CATG | 5 cut(s) | 8, 104, 134, 769, 991 |
| Kzo9I | GATC | 3 cut(s) | 271, 561, 630 |
| LmnI | GCTCC | 1 cut(s) | 427 |
| Lsp1109I | GCAGC | 2 cut(s) | 147, 635 |
| LweI | GCATC | 2 cut(s) | 240, 502 |
| MaeI | CTAG | 2 cut(s) | 344, 620 |
| MaeIII | GTNAC | 2 cut(s) | 649, 921 |
| MalI | GATC | 3 cut(s) | 273, 563, 632 |
| MboI | GATC | 3 cut(s) | 271, 561, 630 |
| MboII | GAAGA | 4 cut(s) | 131, 629, 923, 1123 |
| MflI | RGATCY | 1 cut(s) | 561 |
| MhlI | GDGCHC | 3 cut(s) | 39, 84, 424 |
| MluCI | AATT | 3 cut(s) | 490, 803, 1083 |
| MlyI | GAGTC | 1 cut(s) | 447 |
| MmeI | TCCRAC | 4 cut(s) | 213, 941, 1019, 1077 |
| Mph1103I | ATGCAT | 1 cut(s) | 6 |
| MseI | TTAA | 3 cut(s) | 663, 1004, 1011 |
| MslI | CAYNNNNRTG | 1 cut(s) | 510 |
| MspI | CCGG | 3 cut(s) | 159, 476, 701 |
| MspR9I | CCNGG | 3 cut(s) | 159, 743, 793 |
| MvaI | CCWGG | 2 cut(s) | 743, 793 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 26, 228, 375 |
| NciI | CCSGG | 1 cut(s) | 159 |
| NdeII | GATC | 3 cut(s) | 271, 561, 630 |
| NlaIII | CATG | 5 cut(s) | 8, 104, 134, 769, 991 |
| NlaIV | GGNNCC | 4 cut(s) | 36, 37, 83, 526 |
| NmeAIII | GCCGAG | 2 cut(s) | 310, 404 |
| NmuCI | GTSAC | 1 cut(s) | 649 |
| NsiI | ATGCAT | 1 cut(s) | 6 |
| NspI | RCATGY | 1 cut(s) | 8 |
| NspV | TTCGAA | 1 cut(s) | 932 |
| PceI | AGGCCT | 1 cut(s) | 342 |
| PcsI | WCGNNNNNNNCGW | 5 cut(s) | 213, 240, 309, 315, 318 |
| PfeI | GAWTC | 5 cut(s) | 472, 552, 604, 983, 1127 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 977 |
| PkrI | GCNGC | 4 cut(s) | 137, 230, 388, 625 |
| PleI | GAGTC | 1 cut(s) | 447 |
| PpsI | GAGTC | 1 cut(s) | 447 |
| Psp6I | CCWGG | 2 cut(s) | 741, 791 |
| PspGI | CCWGG | 2 cut(s) | 741, 791 |
| PspN4I | GGNNCC | 4 cut(s) | 36, 37, 83, 526 |
| PspOMI | GGGCCC | 1 cut(s) | 35 |
| PspPI | GGNCC | 4 cut(s) | 35, 36, 124, 698 |
| PsuI | RGATCY | 1 cut(s) | 561 |
| RsaI | GTAC | 3 cut(s) | 546, 843, 860 |
| RsaNI | GTAC | 3 cut(s) | 545, 842, 859 |
| RseI | CAYNNNNRTG | 1 cut(s) | 510 |
| SaqAI | TTAA | 3 cut(s) | 663, 1004, 1011 |
| SatI | GCNGC | 4 cut(s) | 136, 229, 387, 624 |
| Sau3AI | GATC | 3 cut(s) | 271, 561, 630 |
| Sau96I | GGNCC | 4 cut(s) | 35, 36, 124, 698 |
| SchI | GAGTC | 1 cut(s) | 447 |
| ScrFI | CCNGG | 3 cut(s) | 159, 743, 793 |
| SduI | GDGCHC | 3 cut(s) | 39, 84, 424 |
| SfaNI | GCATC | 2 cut(s) | 240, 502 |
| SfuI | TTCGAA | 1 cut(s) | 932 |
| SinI | GGWCC | 2 cut(s) | 124, 698 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 510 |
| Sse9I | AATT | 3 cut(s) | 490, 803, 1083 |
| SseBI | AGGCCT | 1 cut(s) | 342 |
| SsiI | CCGC | 7 cut(s) | 15, 220, 229, 250, 369, 387, 463 |
| SspI | AATATT | 2 cut(s) | 595, 946 |
| SspMI | CTAG | 2 cut(s) | 344, 620 |
| StuI | AGGCCT | 1 cut(s) | 342 |
| StyD4I | CCNGG | 3 cut(s) | 157, 741, 791 |
| StyI | CCWWGG | 4 cut(s) | 223, 343, 390, 641 |
| TaaI | ACNGT | 1 cut(s) | 938 |
| TaqI | TCGA | 5 cut(s) | 243, 274, 510, 550, 932 |
| TasI | AATT | 3 cut(s) | 490, 803, 1083 |
| TatI | WGTACW | 2 cut(s) | 544, 841 |
| TauI | GCSGC | 2 cut(s) | 231, 389 |
| TfiI | GAWTC | 5 cut(s) | 472, 552, 604, 983, 1127 |
| Tru1I | TTAA | 3 cut(s) | 663, 1004, 1011 |
| Tru9I | TTAA | 3 cut(s) | 663, 1004, 1011 |
| TscAI | CASTG | 1 cut(s) | 658 |
| TseFI | GTSAC | 1 cut(s) | 649 |
| TseI | GCWGC | 2 cut(s) | 135, 623 |
| Tsp45I | GTSAC | 1 cut(s) | 649 |
| TspDTI | ATGAA | 5 cut(s) | 117, 280, 681, 1059, 1124 |
| TspRI | CASTG | 1 cut(s) | 658 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 977 |
| VpaK11BI | GGWCC | 2 cut(s) | 124, 698 |
| XceI | RCATGY | 1 cut(s) | 8 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 935 |
| XmaJI | CCTAGG | 1 cut(s) | 343 |
| XspI | CTAG | 2 cut(s) | 344, 620 |
| Zsp2I | ATGCAT | 1 cut(s) | 6 |