ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 1 cut(s) | 806 |
| AccII | CGCG | 3 cut(s) | 278, 469, 717 |
| AciI | CCGC | 7 cut(s) | 261, 278, 352, 386, 467, 715, 907 |
| AclWI | GGATC | 1 cut(s) | 672 |
| AcsI | RAATTY | 1 cut(s) | 324 |
| AcuI | CTGAAG | 1 cut(s) | 737 |
| AdeI | CACNNNGTG | 1 cut(s) | 363 |
| AfaI | GTAC | 2 cut(s) | 379, 623 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 100, 806, 906 |
| AgsI | TTSAA | 2 cut(s) | 13, 782 |
| AjnI | CCWGG | 1 cut(s) | 99 |
| AleI | CACNNNNGTG | 1 cut(s) | 876 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 518, 550 |
| AluBI | AGCT | 7 cut(s) | 125, 347, 479, 503, 593, 772, 925 |
| AluI | AGCT | 7 cut(s) | 125, 347, 479, 503, 593, 772, 925 |
| Alw21I | GWGCWC | 1 cut(s) | 187 |
| Alw26I | GTCTC | 2 cut(s) | 609, 825 |
| Alw44I | GTGCAC | 1 cut(s) | 183 |
| AlwI | GGATC | 1 cut(s) | 672 |
| AoxI | GGCC | 4 cut(s) | 6, 37, 460, 971 |
| ApaI | GGGCCC | 1 cut(s) | 464 |
| ApaLI | GTGCAC | 1 cut(s) | 183 |
| ApoI | RAATTY | 1 cut(s) | 324 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 838, 870 |
| AspLEI | GCGC | 3 cut(s) | 217, 228, 719 |
| AspS9I | GGNCC | 4 cut(s) | 460, 461, 558, 971 |
| AsuC2I | CCSGG | 2 cut(s) | 547, 975 |
| AsuHPI | GGTGA | 1 cut(s) | 431 |
| AvaII | GGWCC | 1 cut(s) | 558 |
| BaeGI | GKGCMC | 2 cut(s) | 187, 464 |
| BanII | GRGCYC | 1 cut(s) | 464 |
| Bbv12I | GWGCWC | 1 cut(s) | 187 |
| BccI | CCATC | 2 cut(s) | 164, 783 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 926, 960 |
| BciT130I | CCWGG | 1 cut(s) | 101 |
| BcnI | CCSGG | 2 cut(s) | 547, 975 |
| BcoDI | GTCTC | 2 cut(s) | 609, 825 |
| BfaI | CTAG | 3 cut(s) | 96, 122, 476 |
| BfoI | RGCGCY | 1 cut(s) | 218 |
| BisI | GCNGC | 1 cut(s) | 387 |
| BlsI | GCNGC | 1 cut(s) | 388 |
| Bme1390I | CCNGG | 3 cut(s) | 101, 547, 975 |
| Bme18I | GGWCC | 1 cut(s) | 558 |
| BmgT120I | GGNCC | 4 cut(s) | 460, 461, 558, 971 |
| BmiI | GGNNCC | 5 cut(s) | 461, 462, 463, 544, 713 |
| BmrFI | CCNGG | 3 cut(s) | 101, 547, 975 |
| BmrI | ACTGGG | 1 cut(s) | 233 |
| BmsI | GCATC | 4 cut(s) | 52, 363, 783, 894 |
| BmuI | ACTGGG | 1 cut(s) | 233 |
| BpmI | CTGGAG | 1 cut(s) | 324 |
| Bpu10I | CCTNAGC | 1 cut(s) | 248 |
| BpuEI | CTTGAG | 1 cut(s) | 42 |
| BpuMI | CCSGG | 2 cut(s) | 547, 975 |
| BsaAI | YACGTR | 3 cut(s) | 363, 377, 555 |
| BsaJI | CCNNGG | 2 cut(s) | 144, 404 |
| BsaWI | WCCGGW | 1 cut(s) | 312 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 803, 833 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 100, 806, 906 |
| Bse1I | ACTGG | 3 cut(s) | 239, 307, 325 |
| Bse3DI | GCAATG | 3 cut(s) | 235, 614, 667 |
| BseBI | CCWGG | 1 cut(s) | 101 |
| BseDI | CCNNGG | 2 cut(s) | 144, 404 |
| BseGI | GGATG | 2 cut(s) | 794, 798 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 100, 806, 906 |
| BseMI | GCAATG | 3 cut(s) | 235, 614, 667 |
| BseMII | CTCAG | 4 cut(s) | 262, 451, 494, 836 |
| BseNI | ACTGG | 3 cut(s) | 239, 307, 325 |
| BseSI | GKGCMC | 2 cut(s) | 187, 464 |
| Bsh1236I | CGCG | 3 cut(s) | 278, 469, 717 |
| Bsh1285I | CGRYCG | 1 cut(s) | 662 |
| BshFI | GGCC | 4 cut(s) | 8, 39, 462, 973 |
| BsiEI | CGRYCG | 1 cut(s) | 662 |
| BsiHKAI | GWGCWC | 1 cut(s) | 187 |
| BsiSI | CCGG | 5 cut(s) | 244, 313, 547, 841, 974 |
| BslFI | GGGAC | 1 cut(s) | 221 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 100, 806, 906 |
| BsmAI | GTCTC | 2 cut(s) | 609, 825 |
| BsmFI | GGGAC | 1 cut(s) | 221 |
| BsmI | GAATGC | 1 cut(s) | 757 |
| BsnI | GGCC | 4 cut(s) | 8, 39, 462, 973 |
| Bsp120I | GGGCCC | 1 cut(s) | 460 |
| Bsp1286I | GDGCHC | 2 cut(s) | 187, 464 |
| Bsp143I | GATC | 3 cut(s) | 159, 659, 664 |
| Bsp19I | CCATGG | 1 cut(s) | 404 |
| BspACI | CCGC | 7 cut(s) | 261, 278, 352, 386, 467, 715, 907 |
| BspANI | GGCC | 4 cut(s) | 8, 39, 462, 973 |
| BspCNI | CTCAG | 4 cut(s) | 261, 450, 493, 835 |
| BspFNI | CGCG | 3 cut(s) | 278, 469, 717 |
| BspLI | GGNNCC | 5 cut(s) | 461, 462, 463, 544, 713 |
| BspPI | GGATC | 1 cut(s) | 672 |
| BsrDI | GCAATG | 3 cut(s) | 235, 614, 667 |
| BsrI | ACTGG | 3 cut(s) | 239, 307, 325 |
| BssECI | CCNNGG | 2 cut(s) | 144, 404 |
| BssMI | GATC | 3 cut(s) | 159, 659, 664 |
| BssT1I | CCWWGG | 1 cut(s) | 404 |
| Bst2UI | CCWGG | 1 cut(s) | 101 |
| Bst4CI | ACNGT | 1 cut(s) | 203 |
| BstBAI | YACGTR | 3 cut(s) | 363, 377, 555 |
| BstC8I | GCNNGC | 2 cut(s) | 6, 401 |
| BstDEI | CTNAG | 5 cut(s) | 248, 437, 480, 653, 822 |
| BstDSI | CCRYGG | 1 cut(s) | 404 |
| BstF5I | GGATG | 2 cut(s) | 794, 798 |
| BstFNI | CGCG | 3 cut(s) | 278, 469, 717 |
| BstH2I | RGCGCY | 1 cut(s) | 218 |
| BstHHI | GCGC | 3 cut(s) | 217, 228, 719 |
| BstKTI | GATC | 3 cut(s) | 162, 662, 667 |
| BstMAI | GTCTC | 2 cut(s) | 609, 825 |
| BstMBI | GATC | 3 cut(s) | 159, 659, 664 |
| BstMCI | CGRYCG | 1 cut(s) | 662 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 223, 344 |
| BstNI | CCWGG | 1 cut(s) | 101 |
| BstSCI | CCNGG | 3 cut(s) | 99, 545, 973 |
| BstSLI | GKGCMC | 2 cut(s) | 187, 464 |
| BstSNI | TACGTA | 1 cut(s) | 377 |
| BstUI | CGCG | 3 cut(s) | 278, 469, 717 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 708 |
| BsuRI | GGCC | 4 cut(s) | 8, 39, 462, 973 |
| BtgI | CCRYGG | 1 cut(s) | 404 |
| BtsCI | GGATG | 2 cut(s) | 794, 798 |
| BtsIMutI | CAGTG | 2 cut(s) | 318, 444 |
| Cac8I | GCNNGC | 2 cut(s) | 6, 401 |
| CfoI | GCGC | 3 cut(s) | 217, 228, 719 |
| Cfr13I | GGNCC | 4 cut(s) | 460, 461, 558, 971 |
| CseI | GACGC | 4 cut(s) | 162, 284, 569, 613 |
| Csp6I | GTAC | 2 cut(s) | 378, 622 |
| CviAII | CATG | 4 cut(s) | 405, 862, 938, 968 |
| CviQI | GTAC | 2 cut(s) | 378, 622 |
| DdeI | CTNAG | 5 cut(s) | 248, 437, 480, 653, 822 |
| DpnI | GATC | 3 cut(s) | 161, 661, 666 |
| DpnII | GATC | 3 cut(s) | 159, 659, 664 |
| DraI | TTTAAA | 1 cut(s) | 933 |
| DraIII | CACNNNGTG | 1 cut(s) | 363 |
| EciI | GGCGGA | 1 cut(s) | 250 |
| Eco105I | TACGTA | 1 cut(s) | 377 |
| Eco130I | CCWWGG | 1 cut(s) | 404 |
| Eco147I | AGGCCT | 1 cut(s) | 8 |
| Eco24I | GRGCYC | 1 cut(s) | 464 |
| Eco47I | GGWCC | 1 cut(s) | 558 |
| Eco57I | CTGAAG | 1 cut(s) | 737 |
| EcoO109I | RGGNCCY | 2 cut(s) | 460, 461 |
| EcoRII | CCWGG | 1 cut(s) | 99 |
| EcoT14I | CCWWGG | 1 cut(s) | 404 |
| EcoT22I | ATGCAT | 1 cut(s) | 867 |
| EcoT38I | GRGCYC | 1 cut(s) | 464 |
| ErhI | CCWWGG | 1 cut(s) | 404 |
| FaeI | CATG | 4 cut(s) | 408, 865, 941, 971 |
| FaqI | GGGAC | 1 cut(s) | 221 |
| FatI | CATG | 4 cut(s) | 404, 861, 937, 967 |
| FauI | CCCGC | 1 cut(s) | 474 |
| Fnu4HI | GCNGC | 1 cut(s) | 387 |
| FokI | GGATG | 2 cut(s) | 801, 805 |
| FriOI | GRGCYC | 1 cut(s) | 464 |
| Fsp4HI | GCNGC | 1 cut(s) | 387 |
| FspBI | CTAG | 3 cut(s) | 96, 122, 476 |
| GlaI | GCGC | 3 cut(s) | 216, 227, 718 |
| GluI | GCNGC | 1 cut(s) | 387 |
| GsuI | CTGGAG | 1 cut(s) | 324 |
| HaeII | RGCGCY | 1 cut(s) | 218 |
| HaeIII | GGCC | 4 cut(s) | 8, 39, 462, 973 |
| HapII | CCGG | 5 cut(s) | 244, 313, 547, 841, 974 |
| HgaI | GACGC | 4 cut(s) | 162, 284, 569, 613 |
| HhaI | GCGC | 3 cut(s) | 217, 228, 719 |
| Hin1II | CATG | 4 cut(s) | 408, 865, 941, 971 |
| Hin6I | GCGC | 3 cut(s) | 215, 226, 717 |
| HinP1I | GCGC | 3 cut(s) | 215, 226, 717 |
| HincII | GTYRAC | 1 cut(s) | 141 |
| HindII | GTYRAC | 1 cut(s) | 141 |
| HinfI | GANTC | 6 cut(s) | 367, 433, 487, 812, 913, 943 |
| HpaII | CCGG | 5 cut(s) | 244, 313, 547, 841, 974 |
| HphI | GGTGA | 1 cut(s) | 431 |
| Hpy166II | GTNNAC | 4 cut(s) | 141, 185, 318, 552 |
| Hpy188I | TCNGA | 4 cut(s) | 115, 483, 664, 763 |
| Hpy188III | TCNNGA | 4 cut(s) | 13, 59, 584, 633 |
| Hpy8I | GTNNAC | 4 cut(s) | 141, 185, 318, 552 |
| Hpy99I | CGWCG | 3 cut(s) | 156, 542, 607 |
| HpyAV | CCTTC | 1 cut(s) | 19 |
| HpyCH4III | ACNGT | 1 cut(s) | 203 |
| HpyCH4IV | ACGT | 3 cut(s) | 362, 376, 554 |
| HpyCH4V | TGCA | 3 cut(s) | 4, 185, 865 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 223, 344 |
| HpyF3I | CTNAG | 5 cut(s) | 248, 437, 480, 653, 822 |
| HpySE526I | ACGT | 3 cut(s) | 362, 376, 554 |
| Hsp92II | CATG | 4 cut(s) | 408, 865, 941, 971 |
| HspAI | GCGC | 3 cut(s) | 215, 226, 717 |
| Kzo9I | GATC | 3 cut(s) | 159, 659, 664 |
| LmnI | GCTCC | 4 cut(s) | 548, 577, 724, 801 |
| LweI | GCATC | 4 cut(s) | 52, 363, 783, 894 |
| MaeI | CTAG | 3 cut(s) | 96, 122, 476 |
| MaeII | ACGT | 3 cut(s) | 362, 376, 554 |
| MaeIII | GTNAC | 1 cut(s) | 440 |
| MalI | GATC | 3 cut(s) | 161, 661, 666 |
| MboI | GATC | 3 cut(s) | 159, 659, 664 |
| MboII | GAAGA | 1 cut(s) | 206 |
| MhlI | GDGCHC | 2 cut(s) | 187, 464 |
| MluCI | AATT | 4 cut(s) | 28, 324, 491, 728 |
| MlyI | GAGTC | 3 cut(s) | 481, 821, 952 |
| MmeI | TCCRAC | 2 cut(s) | 504, 910 |
| MnlI | CCTC | 7 cut(s) | 77, 154, 274, 660, 679, 684, 733 |
| Mph1103I | ATGCAT | 1 cut(s) | 867 |
| MseI | TTAA | 2 cut(s) | 426, 932 |
| MslI | CAYNNNNRTG | 1 cut(s) | 876 |
| MspI | CCGG | 5 cut(s) | 244, 313, 547, 841, 974 |
| MspR9I | CCNGG | 3 cut(s) | 101, 547, 975 |
| Mva1269I | GAATGC | 1 cut(s) | 757 |
| MvaI | CCWGG | 1 cut(s) | 101 |
| MvnI | CGCG | 3 cut(s) | 278, 469, 717 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 223, 344 |
| NciI | CCSGG | 2 cut(s) | 547, 975 |
| NcoI | CCATGG | 1 cut(s) | 404 |
| NdeII | GATC | 3 cut(s) | 159, 659, 664 |
| NlaIII | CATG | 4 cut(s) | 408, 865, 941, 971 |
| NlaIV | GGNNCC | 5 cut(s) | 461, 462, 463, 544, 713 |
| NmuCI | GTSAC | 1 cut(s) | 440 |
| NsiI | ATGCAT | 1 cut(s) | 867 |
| OliI | CACNNNNGTG | 1 cut(s) | 876 |
| PceI | AGGCCT | 1 cut(s) | 8 |
| PctI | GAATGC | 1 cut(s) | 757 |
| PfeI | GAWTC | 3 cut(s) | 367, 433, 913 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 806 |
| PkrI | GCNGC | 1 cut(s) | 388 |
| Ple19I | CGATCG | 1 cut(s) | 662 |
| PleI | GAGTC | 3 cut(s) | 481, 820, 951 |
| PpsI | GAGTC | 3 cut(s) | 481, 820, 951 |
| Ppu21I | YACGTR | 3 cut(s) | 363, 377, 555 |
| Psp6I | CCWGG | 1 cut(s) | 99 |
| PspGI | CCWGG | 1 cut(s) | 99 |
| PspN4I | GGNNCC | 5 cut(s) | 461, 462, 463, 544, 713 |
| PspOMI | GGGCCC | 1 cut(s) | 460 |
| PspPI | GGNCC | 4 cut(s) | 460, 461, 558, 971 |
| PvuI | CGATCG | 1 cut(s) | 662 |
| RsaI | GTAC | 2 cut(s) | 379, 623 |
| RsaNI | GTAC | 2 cut(s) | 378, 622 |
| RseI | CAYNNNNRTG | 1 cut(s) | 876 |
| SaqAI | TTAA | 2 cut(s) | 426, 932 |
| SatI | GCNGC | 1 cut(s) | 387 |
| Sau3AI | GATC | 3 cut(s) | 159, 659, 664 |
| Sau96I | GGNCC | 4 cut(s) | 460, 461, 558, 971 |
| SchI | GAGTC | 3 cut(s) | 481, 821, 952 |
| ScrFI | CCNGG | 3 cut(s) | 101, 547, 975 |
| SduI | GDGCHC | 2 cut(s) | 187, 464 |
| SfaNI | GCATC | 4 cut(s) | 52, 363, 783, 894 |
| SinI | GGWCC | 1 cut(s) | 558 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 876 |
| SmlI | CTYRAG | 1 cut(s) | 57 |
| SmoI | CTYRAG | 1 cut(s) | 57 |
| SnaBI | TACGTA | 1 cut(s) | 377 |
| Sse9I | AATT | 4 cut(s) | 28, 324, 491, 728 |
| SseBI | AGGCCT | 1 cut(s) | 8 |
| SsiI | CCGC | 7 cut(s) | 261, 278, 352, 386, 467, 715, 907 |
| SspMI | CTAG | 3 cut(s) | 96, 122, 476 |
| StuI | AGGCCT | 1 cut(s) | 8 |
| StyD4I | CCNGG | 3 cut(s) | 99, 545, 973 |
| StyI | CCWWGG | 1 cut(s) | 404 |
| TaaI | ACNGT | 1 cut(s) | 203 |
| TaiI | ACGT | 3 cut(s) | 365, 379, 557 |
| TaqI | TCGA | 5 cut(s) | 151, 168, 299, 634, 658 |
| TasI | AATT | 4 cut(s) | 28, 324, 491, 728 |
| TauI | GCSGC | 1 cut(s) | 389 |
| TfiI | GAWTC | 3 cut(s) | 367, 433, 913 |
| Tru1I | TTAA | 2 cut(s) | 426, 932 |
| Tru9I | TTAA | 2 cut(s) | 426, 932 |
| TscAI | CASTG | 2 cut(s) | 325, 451 |
| TseFI | GTSAC | 1 cut(s) | 440 |
| Tsp45I | GTSAC | 1 cut(s) | 440 |
| TspDTI | ATGAA | 1 cut(s) | 246 |
| TspGWI | ACGGA | 1 cut(s) | 65 |
| TspRI | CASTG | 2 cut(s) | 325, 451 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 806 |
| VneI | GTGCAC | 1 cut(s) | 183 |
| VpaK11BI | GGWCC | 1 cut(s) | 558 |
| XapI | RAATTY | 1 cut(s) | 324 |
| XspI | CTAG | 3 cut(s) | 96, 122, 476 |
| Zsp2I | ATGCAT | 1 cut(s) | 867 |