Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccII | CGCG | 2 cut(s) | 213, 1018 |
| AciI | CCGC | 3 cut(s) | 38, 472, 1006 |
| AcoI | YGGCCR | 1 cut(s) | 156 |
| AcuI | CTGAAG | 2 cut(s) | 188, 685 |
| AfaI | GTAC | 2 cut(s) | 515, 664 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 471 |
| AflIII | ACRYGT | 2 cut(s) | 304, 626 |
| AgsI | TTSAA | 9 cut(s) | 294, 311, 461, 800, 852, 943, 954, 979, 1030 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 205 |
| AjiI | CACGTC | 1 cut(s) | 629 |
| AjnI | CCWGG | 1 cut(s) | 280 |
| AluBI | AGCT | 8 cut(s) | 83, 163, 194, 229, 273, 374, 558, 647 |
| AluI | AGCT | 8 cut(s) | 83, 163, 194, 229, 273, 374, 558, 647 |
| Alw21I | GWGCWC | 1 cut(s) | 275 |
| Alw26I | GTCTC | 3 cut(s) | 57, 213, 966 |
| AoxI | GGCC | 4 cut(s) | 135, 156, 577, 887 |
| ApeKI | GCWGC | 1 cut(s) | 74 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 289 |
| AspLEI | GCGC | 1 cut(s) | 215 |
| AspS9I | GGNCC | 2 cut(s) | 577, 966 |
| AsuC2I | CCSGG | 1 cut(s) | 423 |
| AsuHPI | GGTGA | 1 cut(s) | 849 |
| AvaII | GGWCC | 1 cut(s) | 966 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 441, 474 |
| BalI | TGGCCA | 1 cut(s) | 158 |
| BanII | GRGCYC | 1 cut(s) | 275 |
| BbsI | GAAGAC | 1 cut(s) | 27 |
| Bbv12I | GWGCWC | 1 cut(s) | 275 |
| BbvI | GCAGC | 1 cut(s) | 86 |
| BccI | CCATC | 1 cut(s) | 293 |
| BciT130I | CCWGG | 1 cut(s) | 282 |
| BclI | TGATCA | 1 cut(s) | 520 |
| BcnI | CCSGG | 1 cut(s) | 423 |
| BcoDI | GTCTC | 3 cut(s) | 57, 213, 966 |
| BfaI | CTAG | 1 cut(s) | 531 |
| BfmI | CTRYAG | 1 cut(s) | 258 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 880 |
| BglII | AGATCT | 2 cut(s) | 46, 865 |
| BisI | GCNGC | 3 cut(s) | 75, 473, 1006 |
| BlsI | GCNGC | 3 cut(s) | 76, 474, 1007 |
| BmcAI | AGTACT | 1 cut(s) | 664 |
| Bme1390I | CCNGG | 2 cut(s) | 282, 423 |
| Bme18I | GGWCC | 1 cut(s) | 966 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 205 |
| BmgBI | CACGTC | 1 cut(s) | 629 |
| BmgT120I | GGNCC | 2 cut(s) | 577, 966 |
| BmiI | GGNNCC | 3 cut(s) | 873, 967, 1004 |
| BmrFI | CCNGG | 2 cut(s) | 282, 423 |
| BmsI | GCATC | 2 cut(s) | 267, 1027 |
| BpiI | GAAGAC | 1 cut(s) | 27 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 122, 154, 257, 289 |
| BpmI | CTGGAG | 2 cut(s) | 49, 890 |
| Bpu10I | CCTNAGC | 1 cut(s) | 468 |
| BpuEI | CTTGAG | 1 cut(s) | 800 |
| BpuMI | CCSGG | 1 cut(s) | 423 |
| BsaJI | CCNNGG | 2 cut(s) | 174, 878 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 471 |
| Bse1I | ACTGG | 1 cut(s) | 32 |
| Bse3DI | GCAATG | 2 cut(s) | 352, 921 |
| BseBI | CCWGG | 1 cut(s) | 282 |
| BseDI | CCNNGG | 2 cut(s) | 174, 878 |
| BseGI | GGATG | 2 cut(s) | 364, 838 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 471 |
| BseMI | GCAATG | 2 cut(s) | 352, 921 |
| BseMII | CTCAG | 2 cut(s) | 120, 836 |
| BseNI | ACTGG | 1 cut(s) | 32 |
| BseRI | GAGGAG | 4 cut(s) | 160, 278, 397, 867 |
| BseXI | GCAGC | 1 cut(s) | 86 |
| BseYI | CCCAGC | 1 cut(s) | 726 |
| BsgI | GTGCAG | 1 cut(s) | 370 |
| Bsh1236I | CGCG | 2 cut(s) | 213, 1018 |
| BshFI | GGCC | 4 cut(s) | 137, 158, 579, 889 |
| BsiHKAI | GWGCWC | 1 cut(s) | 275 |
| BsiSI | CCGG | 1 cut(s) | 423 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 471 |
| BsmAI | GTCTC | 3 cut(s) | 57, 213, 966 |
| BsmI | GAATGC | 1 cut(s) | 289 |
| BsnI | GGCC | 4 cut(s) | 137, 158, 579, 889 |
| Bsp1286I | GDGCHC | 1 cut(s) | 275 |
| Bsp1407I | TGTACA | 1 cut(s) | 513 |
| Bsp143I | GATC | 5 cut(s) | 46, 520, 706, 865, 994 |
| BspACI | CCGC | 3 cut(s) | 38, 472, 1006 |
| BspANI | GGCC | 4 cut(s) | 137, 158, 579, 889 |
| BspCNI | CTCAG | 2 cut(s) | 121, 837 |
| BspFNI | CGCG | 2 cut(s) | 213, 1018 |
| BspLI | GGNNCC | 3 cut(s) | 873, 967, 1004 |
| BspQI | GCTCTTC | 1 cut(s) | 358 |
| BsrDI | GCAATG | 2 cut(s) | 352, 921 |
| BsrGI | TGTACA | 1 cut(s) | 513 |
| BsrI | ACTGG | 1 cut(s) | 32 |
| BssECI | CCNNGG | 2 cut(s) | 174, 878 |
| BssMI | GATC | 5 cut(s) | 46, 520, 706, 865, 994 |
| BssT1I | CCWWGG | 1 cut(s) | 174 |
| Bst2UI | CCWGG | 1 cut(s) | 282 |
| Bst4CI | ACNGT | 4 cut(s) | 513, 518, 742, 814 |
| Bst6I | CTCTTC | 4 cut(s) | 244, 250, 358, 475 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 908 |
| BstAUI | TGTACA | 1 cut(s) | 513 |
| BstDEI | CTNAG | 4 cut(s) | 129, 468, 666, 845 |
| BstF5I | GGATG | 2 cut(s) | 364, 838 |
| BstFNI | CGCG | 2 cut(s) | 213, 1018 |
| BstHHI | GCGC | 1 cut(s) | 215 |
| BstKTI | GATC | 5 cut(s) | 49, 523, 709, 868, 997 |
| BstMAI | GTCTC | 3 cut(s) | 57, 213, 966 |
| BstMBI | GATC | 5 cut(s) | 46, 520, 706, 865, 994 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 80, 286, 782, 880, 908 |
| BstNI | CCWGG | 1 cut(s) | 282 |
| BstNSI | RCATGY | 1 cut(s) | 308 |
| BstSCI | CCNGG | 2 cut(s) | 280, 421 |
| BstSFI | CTRYAG | 1 cut(s) | 258 |
| BstUI | CGCG | 2 cut(s) | 213, 1018 |
| BstV1I | GCAGC | 1 cut(s) | 86 |
| BstV2I | GAAGAC | 1 cut(s) | 27 |
| BstX2I | RGATCY | 2 cut(s) | 46, 865 |
| BstYI | RGATCY | 2 cut(s) | 46, 865 |
| BsuRI | GGCC | 4 cut(s) | 137, 158, 579, 889 |
| BtrI | CACGTC | 1 cut(s) | 629 |
| BtsCI | GGATG | 2 cut(s) | 364, 838 |
| BtsI | GCAGTG | 1 cut(s) | 601 |
| BtsIMutI | CAGTG | 2 cut(s) | 523, 601 |
| CfoI | GCGC | 1 cut(s) | 215 |
| Cfr13I | GGNCC | 2 cut(s) | 577, 966 |
| CseI | GACGC | 1 cut(s) | 80 |
| Csp6I | GTAC | 2 cut(s) | 514, 663 |
| CviAII | CATG | 3 cut(s) | 305, 710, 929 |
| CviQI | GTAC | 2 cut(s) | 514, 663 |
| DdeI | CTNAG | 4 cut(s) | 129, 468, 666, 845 |
| DpnI | GATC | 5 cut(s) | 48, 522, 708, 867, 996 |
| DpnII | GATC | 5 cut(s) | 46, 520, 706, 865, 994 |
| DriI | GACNNNNNGTC | 1 cut(s) | 205 |
| EaeI | YGGCCR | 1 cut(s) | 156 |
| Eam1104I | CTCTTC | 4 cut(s) | 244, 250, 358, 475 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 205 |
| EarI | CTCTTC | 4 cut(s) | 244, 250, 358, 475 |
| Ecl136II | GAGCTC | 1 cut(s) | 273 |
| Eco130I | CCWWGG | 1 cut(s) | 174 |
| Eco24I | GRGCYC | 1 cut(s) | 275 |
| Eco47I | GGWCC | 1 cut(s) | 966 |
| Eco53kI | GAGCTC | 1 cut(s) | 273 |
| Eco57I | CTGAAG | 2 cut(s) | 188, 685 |
| EcoICRI | GAGCTC | 1 cut(s) | 273 |
| EcoRII | CCWGG | 1 cut(s) | 280 |
| EcoT14I | CCWWGG | 1 cut(s) | 174 |
| EcoT38I | GRGCYC | 1 cut(s) | 275 |
| ErhI | CCWWGG | 1 cut(s) | 174 |
| FaeI | CATG | 3 cut(s) | 308, 713, 932 |
| FatI | CATG | 3 cut(s) | 304, 709, 928 |
| FbaI | TGATCA | 1 cut(s) | 520 |
| Fnu4HI | GCNGC | 3 cut(s) | 75, 473, 1006 |
| FokI | GGATG | 2 cut(s) | 371, 845 |
| FriOI | GRGCYC | 1 cut(s) | 275 |
| Fsp4HI | GCNGC | 3 cut(s) | 75, 473, 1006 |
| FspBI | CTAG | 1 cut(s) | 531 |
| GlaI | GCGC | 1 cut(s) | 214 |
| GluI | GCNGC | 3 cut(s) | 75, 473, 1006 |
| GsaI | CCCAGC | 1 cut(s) | 730 |
| GsuI | CTGGAG | 2 cut(s) | 49, 890 |
| HaeIII | GGCC | 4 cut(s) | 137, 158, 579, 889 |
| HapII | CCGG | 1 cut(s) | 423 |
| HgaI | GACGC | 1 cut(s) | 80 |
| HhaI | GCGC | 1 cut(s) | 215 |
| Hin1II | CATG | 3 cut(s) | 308, 713, 932 |
| Hin6I | GCGC | 1 cut(s) | 213 |
| HinP1I | GCGC | 1 cut(s) | 213 |
| HindIII | AAGCTT | 1 cut(s) | 227 |
| HinfI | GANTC | 3 cut(s) | 92, 122, 685 |
| HpaII | CCGG | 1 cut(s) | 423 |
| HphI | GGTGA | 1 cut(s) | 849 |
| Hpy166II | GTNNAC | 1 cut(s) | 509 |
| Hpy188I | TCNGA | 4 cut(s) | 358, 704, 761, 846 |
| Hpy188III | TCNNGA | 4 cut(s) | 110, 128, 869, 969 |
| Hpy8I | GTNNAC | 1 cut(s) | 509 |
| Hpy99I | CGWCG | 1 cut(s) | 74 |
| HpyAV | CCTTC | 5 cut(s) | 212, 851, 960, 970, 993 |
| HpyCH4III | ACNGT | 4 cut(s) | 513, 518, 742, 814 |
| HpyCH4IV | ACGT | 2 cut(s) | 505, 628 |
| HpyCH4V | TGCA | 6 cut(s) | 345, 380, 387, 494, 776, 926 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 80, 286, 782, 880, 908 |
| HpyF3I | CTNAG | 4 cut(s) | 129, 468, 666, 845 |
| HpySE526I | ACGT | 2 cut(s) | 505, 628 |
| Hsp92II | CATG | 3 cut(s) | 308, 713, 932 |
| HspAI | GCGC | 1 cut(s) | 213 |
| Ksp22I | TGATCA | 1 cut(s) | 520 |
| Kzo9I | GATC | 5 cut(s) | 46, 520, 706, 865, 994 |
| LguI | GCTCTTC | 1 cut(s) | 358 |
| LmnI | GCTCC | 3 cut(s) | 265, 871, 1002 |
| Lsp1109I | GCAGC | 1 cut(s) | 86 |
| LweI | GCATC | 2 cut(s) | 267, 1027 |
| MaeI | CTAG | 1 cut(s) | 531 |
| MaeII | ACGT | 2 cut(s) | 505, 628 |
| MaeIII | GTNAC | 4 cut(s) | 52, 233, 629, 1012 |
| MalI | GATC | 5 cut(s) | 48, 522, 708, 867, 996 |
| MboI | GATC | 5 cut(s) | 46, 520, 706, 865, 994 |
| MflI | RGATCY | 2 cut(s) | 46, 865 |
| MhlI | GDGCHC | 1 cut(s) | 275 |
| MlsI | TGGCCA | 1 cut(s) | 158 |
| MluCI | AATT | 5 cut(s) | 398, 583, 852, 944, 1025 |
| MluNI | TGGCCA | 1 cut(s) | 158 |
| MlyI | GAGTC | 1 cut(s) | 116 |
| MmeI | TCCRAC | 1 cut(s) | 660 |
| Mox20I | TGGCCA | 1 cut(s) | 158 |
| MroXI | GAANNNNTTC | 1 cut(s) | 289 |
| MscI | TGGCCA | 1 cut(s) | 158 |
| MseI | TTAA | 1 cut(s) | 732 |
| Msp20I | TGGCCA | 1 cut(s) | 158 |
| MspI | CCGG | 1 cut(s) | 423 |
| MspR9I | CCNGG | 2 cut(s) | 282, 423 |
| Mva1269I | GAATGC | 1 cut(s) | 289 |
| MvaI | CCWGG | 1 cut(s) | 282 |
| MvnI | CGCG | 2 cut(s) | 213, 1018 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 80, 286, 782, 880, 908 |
| NciI | CCSGG | 1 cut(s) | 423 |
| NdeII | GATC | 5 cut(s) | 46, 520, 706, 865, 994 |
| NlaIII | CATG | 3 cut(s) | 308, 713, 932 |
| NlaIV | GGNNCC | 3 cut(s) | 873, 967, 1004 |
| NmeAIII | GCCGAG | 1 cut(s) | 859 |
| NmuCI | GTSAC | 3 cut(s) | 233, 629, 1012 |
| NspI | RCATGY | 1 cut(s) | 308 |
| PciI | ACATGT | 1 cut(s) | 304 |
| PciSI | GCTCTTC | 1 cut(s) | 358 |
| PctI | GAATGC | 1 cut(s) | 289 |
| PdmI | GAANNNNTTC | 1 cut(s) | 289 |
| PfeI | GAWTC | 2 cut(s) | 92, 685 |
| PkrI | GCNGC | 3 cut(s) | 76, 474, 1007 |
| PleI | GAGTC | 1 cut(s) | 116 |
| PpsI | GAGTC | 1 cut(s) | 116 |
| PscI | ACATGT | 1 cut(s) | 304 |
| Psp124BI | GAGCTC | 1 cut(s) | 275 |
| Psp6I | CCWGG | 1 cut(s) | 280 |
| PspFI | CCCAGC | 1 cut(s) | 726 |
| PspGI | CCWGG | 1 cut(s) | 280 |
| PspN4I | GGNNCC | 3 cut(s) | 873, 967, 1004 |
| PspPI | GGNCC | 2 cut(s) | 577, 966 |
| PsuI | RGATCY | 2 cut(s) | 46, 865 |
| RsaI | GTAC | 2 cut(s) | 515, 664 |
| RsaNI | GTAC | 2 cut(s) | 514, 663 |
| SacI | GAGCTC | 1 cut(s) | 275 |
| SapI | GCTCTTC | 1 cut(s) | 358 |
| SaqAI | TTAA | 1 cut(s) | 732 |
| SatI | GCNGC | 3 cut(s) | 75, 473, 1006 |
| Sau3AI | GATC | 5 cut(s) | 46, 520, 706, 865, 994 |
| Sau96I | GGNCC | 2 cut(s) | 577, 966 |
| ScaI | AGTACT | 1 cut(s) | 664 |
| SchI | GAGTC | 1 cut(s) | 116 |
| ScrFI | CCNGG | 2 cut(s) | 282, 423 |
| SduI | GDGCHC | 1 cut(s) | 275 |
| SfaNI | GCATC | 2 cut(s) | 267, 1027 |
| SfcI | CTRYAG | 1 cut(s) | 258 |
| SinI | GGWCC | 1 cut(s) | 966 |
| SmlI | CTYRAG | 1 cut(s) | 779 |
| SmoI | CTYRAG | 1 cut(s) | 779 |
| Sse9I | AATT | 5 cut(s) | 398, 583, 852, 944, 1025 |
| SsiI | CCGC | 3 cut(s) | 38, 472, 1006 |
| SspMI | CTAG | 1 cut(s) | 531 |
| SstI | GAGCTC | 1 cut(s) | 275 |
| StyD4I | CCNGG | 2 cut(s) | 280, 421 |
| StyI | CCWWGG | 1 cut(s) | 174 |
| TaaI | ACNGT | 4 cut(s) | 513, 518, 742, 814 |
| TaiI | ACGT | 2 cut(s) | 508, 631 |
| TaqI | TCGA | 4 cut(s) | 111, 275, 817, 997 |
| TasI | AATT | 5 cut(s) | 398, 583, 852, 944, 1025 |
| TatI | WGTACW | 2 cut(s) | 513, 662 |
| TauI | GCSGC | 2 cut(s) | 475, 1008 |
| TfiI | GAWTC | 2 cut(s) | 92, 685 |
| Tru1I | TTAA | 1 cut(s) | 732 |
| Tru9I | TTAA | 1 cut(s) | 732 |
| TscAI | CASTG | 2 cut(s) | 523, 601 |
| TseFI | GTSAC | 3 cut(s) | 233, 629, 1012 |
| TseI | GCWGC | 1 cut(s) | 74 |
| Tsp45I | GTSAC | 3 cut(s) | 233, 629, 1012 |
| TspDTI | ATGAA | 1 cut(s) | 411 |
| TspRI | CASTG | 2 cut(s) | 523, 601 |
| VpaK11BI | GGWCC | 1 cut(s) | 966 |
| XceI | RCATGY | 1 cut(s) | 308 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 85 |
| XmnI | GAANNNNTTC | 1 cut(s) | 289 |
| XspI | CTAG | 1 cut(s) | 531 |
| ZrmI | AGTACT | 1 cut(s) | 664 |