ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 164 |
| AccB1I | GGYRCC | 1 cut(s) | 849 |
| AciI | CCGC | 2 cut(s) | 238, 695 |
| AclWI | GGATC | 3 cut(s) | 78, 767, 977 |
| AcoI | YGGCCR | 2 cut(s) | 48, 945 |
| AcsI | RAATTY | 1 cut(s) | 1108 |
| AcuI | CTGAAG | 1 cut(s) | 659 |
| AcyI | GRCGYC | 1 cut(s) | 850 |
| AfaI | GTAC | 1 cut(s) | 178 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 57, 147, 626, 940 |
| AgeI | ACCGGT | 1 cut(s) | 520 |
| AgsI | TTSAA | 8 cut(s) | 163, 655, 666, 788, 806, 877, 1076, 1085 |
| AjnI | CCWGG | 2 cut(s) | 55, 375 |
| AluBI | AGCT | 8 cut(s) | 311, 512, 800, 899, 917, 1058, 1066, 1124 |
| AluI | AGCT | 8 cut(s) | 311, 512, 800, 899, 917, 1058, 1066, 1124 |
| Alw21I | GWGCWC | 2 cut(s) | 422, 439 |
| Alw44I | GTGCAC | 2 cut(s) | 418, 435 |
| AlwI | GGATC | 3 cut(s) | 78, 767, 977 |
| Ama87I | CYCGRG | 1 cut(s) | 65 |
| AoxI | GGCC | 2 cut(s) | 48, 945 |
| ApaLI | GTGCAC | 2 cut(s) | 418, 435 |
| ApeKI | GCWGC | 5 cut(s) | 512, 515, 590, 1055, 1124 |
| ApoI | RAATTY | 1 cut(s) | 1108 |
| AsiGI | ACCGGT | 1 cut(s) | 520 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1080 |
| AspLEI | GCGC | 1 cut(s) | 852 |
| AspS9I | GGNCC | 3 cut(s) | 53, 292, 886 |
| AsuC2I | CCSGG | 1 cut(s) | 219 |
| AsuHPI | GGTGA | 3 cut(s) | 235, 284, 641 |
| AvaI | CYCGRG | 1 cut(s) | 65 |
| AvaII | GGWCC | 3 cut(s) | 53, 292, 886 |
| BaeGI | GKGCMC | 2 cut(s) | 422, 439 |
| BanI | GGYRCC | 1 cut(s) | 849 |
| BauI | CACGAG | 1 cut(s) | 129 |
| BbsI | GAAGAC | 1 cut(s) | 22 |
| Bbv12I | GWGCWC | 2 cut(s) | 422, 439 |
| BbvI | GCAGC | 5 cut(s) | 499, 502, 577, 1067, 1111 |
| BccI | CCATC | 2 cut(s) | 603, 739 |
| BceAI | ACGGC | 2 cut(s) | 313, 918 |
| BciT130I | CCWGG | 2 cut(s) | 57, 377 |
| BciVI | GTATCC | 1 cut(s) | 225 |
| BcnI | CCSGG | 1 cut(s) | 219 |
| BfaI | CTAG | 6 cut(s) | 21, 26, 308, 543, 861, 1067 |
| BfmI | CTRYAG | 2 cut(s) | 707, 1053 |
| BfoI | RGCGCY | 1 cut(s) | 853 |
| BfuI | GTATCC | 1 cut(s) | 225 |
| BisI | GCNGC | 5 cut(s) | 513, 516, 591, 1056, 1125 |
| BlsI | GCNGC | 5 cut(s) | 514, 517, 592, 1057, 1126 |
| Bme1390I | CCNGG | 3 cut(s) | 57, 219, 377 |
| Bme18I | GGWCC | 3 cut(s) | 53, 292, 886 |
| BmeT110I | CYCGRG | 1 cut(s) | 65 |
| BmgT120I | GGNCC | 3 cut(s) | 53, 292, 886 |
| BmiI | GGNNCC | 4 cut(s) | 293, 700, 851, 887 |
| BmrFI | CCNGG | 3 cut(s) | 57, 219, 377 |
| BmsI | GCATC | 6 cut(s) | 89, 111, 231, 258, 561, 682 |
| BpiI | GAAGAC | 1 cut(s) | 22 |
| Bpu10I | CCTNAGC | 2 cut(s) | 267, 990 |
| BpuMI | CCSGG | 1 cut(s) | 219 |
| BsaBI | GATNNNNATC | 1 cut(s) | 489 |
| BsaHI | GRCGYC | 1 cut(s) | 850 |
| BsaJI | CCNNGG | 5 cut(s) | 56, 329, 376, 536, 831 |
| BsaWI | WCCGGW | 2 cut(s) | 409, 520 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 454, 484 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 57, 147, 626, 940 |
| Bse118I | RCCGGY | 2 cut(s) | 520, 947 |
| Bse3DI | GCAATG | 1 cut(s) | 977 |
| Bse8I | GATNNNNATC | 1 cut(s) | 489 |
| BseBI | CCWGG | 2 cut(s) | 57, 377 |
| BseDI | CCNNGG | 5 cut(s) | 56, 329, 376, 536, 831 |
| BseGI | GGATG | 4 cut(s) | 104, 576, 614, 697 |
| BseJI | GATNNNNATC | 1 cut(s) | 489 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 57, 147, 626, 940 |
| BseMI | GCAATG | 1 cut(s) | 977 |
| BseMII | CTCAG | 5 cut(s) | 65, 198, 281, 1004, 1050 |
| BseSI | GKGCMC | 2 cut(s) | 422, 439 |
| BseXI | GCAGC | 5 cut(s) | 499, 502, 577, 1067, 1111 |
| BsgI | GTGCAG | 1 cut(s) | 501 |
| BshFI | GGCC | 2 cut(s) | 50, 947 |
| BshNI | GGYRCC | 1 cut(s) | 849 |
| BshTI | ACCGGT | 1 cut(s) | 520 |
| BsiHKAI | GWGCWC | 2 cut(s) | 422, 439 |
| BsiHKCI | CYCGRG | 1 cut(s) | 65 |
| BsiSI | CCGG | 6 cut(s) | 51, 218, 342, 410, 521, 948 |
| BslFI | GGGAC | 2 cut(s) | 305, 899 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 57, 147, 626, 940 |
| BsmFI | GGGAC | 2 cut(s) | 305, 899 |
| BsnI | GGCC | 2 cut(s) | 50, 947 |
| BsoBI | CYCGRG | 1 cut(s) | 65 |
| Bsp1286I | GDGCHC | 2 cut(s) | 422, 439 |
| Bsp143I | GATC | 4 cut(s) | 70, 484, 772, 982 |
| BspACI | CCGC | 2 cut(s) | 238, 695 |
| BspANI | GGCC | 2 cut(s) | 50, 947 |
| BspCNI | CTCAG | 5 cut(s) | 66, 197, 280, 1003, 1049 |
| BspLI | GGNNCC | 4 cut(s) | 293, 700, 851, 887 |
| BspMAI | CTGCAG | 2 cut(s) | 711, 1057 |
| BspPI | GGATC | 3 cut(s) | 78, 767, 977 |
| BspQI | GCTCTTC | 1 cut(s) | 807 |
| BspT107I | GGYRCC | 1 cut(s) | 849 |
| BsrDI | GCAATG | 1 cut(s) | 977 |
| BsrFI | RCCGGY | 2 cut(s) | 520, 947 |
| BssAI | RCCGGY | 2 cut(s) | 520, 947 |
| BssECI | CCNNGG | 5 cut(s) | 56, 329, 376, 536, 831 |
| BssMI | GATC | 4 cut(s) | 70, 484, 772, 982 |
| BssNI | GRCGYC | 1 cut(s) | 850 |
| BssSI | CACGAG | 1 cut(s) | 129 |
| BssT1I | CCWWGG | 2 cut(s) | 536, 831 |
| Bst2BI | CACGAG | 1 cut(s) | 129 |
| Bst2UI | CCWGG | 2 cut(s) | 57, 377 |
| Bst4CI | ACNGT | 1 cut(s) | 205 |
| Bst6I | CTCTTC | 2 cut(s) | 116, 807 |
| BstACI | GRCGYC | 1 cut(s) | 850 |
| BstC8I | GCNNGC | 2 cut(s) | 435, 854 |
| BstDEI | CTNAG | 8 cut(s) | 74, 184, 267, 404, 453, 741, 990, 1036 |
| BstDSI | CCRYGG | 1 cut(s) | 329 |
| BstF5I | GGATG | 4 cut(s) | 104, 576, 614, 697 |
| BstH2I | RGCGCY | 1 cut(s) | 853 |
| BstHHI | GCGC | 1 cut(s) | 852 |
| BstKTI | GATC | 4 cut(s) | 73, 487, 775, 985 |
| BstMBI | GATC | 4 cut(s) | 70, 484, 772, 982 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 255, 995 |
| BstNI | CCWGG | 2 cut(s) | 57, 377 |
| BstSCI | CCNGG | 3 cut(s) | 55, 217, 375 |
| BstSFI | CTRYAG | 2 cut(s) | 707, 1053 |
| BstSLI | GKGCMC | 2 cut(s) | 422, 439 |
| BstV1I | GCAGC | 5 cut(s) | 499, 502, 577, 1067, 1111 |
| BstV2I | GAAGAC | 1 cut(s) | 22 |
| BstX2I | RGATCY | 1 cut(s) | 70 |
| BstYI | RGATCY | 1 cut(s) | 70 |
| BsuI | GTATCC | 1 cut(s) | 225 |
| BsuRI | GGCC | 2 cut(s) | 50, 947 |
| BtgI | CCRYGG | 1 cut(s) | 329 |
| BtsCI | GGATG | 4 cut(s) | 104, 576, 614, 697 |
| BtsI | GCAGTG | 1 cut(s) | 464 |
| BtsIMutI | CAGTG | 2 cut(s) | 201, 464 |
| Cac8I | GCNNGC | 2 cut(s) | 435, 854 |
| CfoI | GCGC | 1 cut(s) | 852 |
| Cfr10I | RCCGGY | 2 cut(s) | 520, 947 |
| Cfr13I | GGNCC | 3 cut(s) | 53, 292, 886 |
| Csp6I | GTAC | 1 cut(s) | 177 |
| CspAI | ACCGGT | 1 cut(s) | 520 |
| CviAII | CATG | 3 cut(s) | 288, 578, 1089 |
| CviQI | GTAC | 1 cut(s) | 177 |
| DdeI | CTNAG | 8 cut(s) | 74, 184, 267, 404, 453, 741, 990, 1036 |
| DinI | GGCGCC | 1 cut(s) | 851 |
| DpnI | GATC | 4 cut(s) | 72, 486, 774, 984 |
| DpnII | GATC | 4 cut(s) | 70, 484, 772, 982 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 164 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 164 |
| EaeI | YGGCCR | 2 cut(s) | 48, 945 |
| Eam1104I | CTCTTC | 2 cut(s) | 116, 807 |
| EarI | CTCTTC | 2 cut(s) | 116, 807 |
| Eco130I | CCWWGG | 2 cut(s) | 536, 831 |
| Eco47I | GGWCC | 3 cut(s) | 53, 292, 886 |
| Eco57I | CTGAAG | 1 cut(s) | 659 |
| Eco88I | CYCGRG | 1 cut(s) | 65 |
| EcoO109I | RGGNCCY | 1 cut(s) | 292 |
| EcoRI | GAATTC | 1 cut(s) | 1108 |
| EcoRII | CCWGG | 2 cut(s) | 55, 375 |
| EcoT14I | CCWWGG | 2 cut(s) | 536, 831 |
| EcoT22I | ATGCAT | 1 cut(s) | 104 |
| EgeI | GGCGCC | 1 cut(s) | 851 |
| EheI | GGCGCC | 1 cut(s) | 851 |
| ErhI | CCWWGG | 2 cut(s) | 536, 831 |
| FaeI | CATG | 3 cut(s) | 291, 581, 1092 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 387, 419 |
| FaqI | GGGAC | 2 cut(s) | 305, 899 |
| FatI | CATG | 3 cut(s) | 287, 577, 1088 |
| FauI | CCCGC | 1 cut(s) | 688 |
| Fnu4HI | GCNGC | 5 cut(s) | 513, 516, 591, 1056, 1125 |
| FokI | GGATG | 4 cut(s) | 111, 583, 621, 704 |
| Fsp4HI | GCNGC | 5 cut(s) | 513, 516, 591, 1056, 1125 |
| FspBI | CTAG | 6 cut(s) | 21, 26, 308, 543, 861, 1067 |
| GlaI | GCGC | 1 cut(s) | 851 |
| GluI | GCNGC | 5 cut(s) | 513, 516, 591, 1056, 1125 |
| HaeII | RGCGCY | 1 cut(s) | 853 |
| HaeIII | GGCC | 2 cut(s) | 50, 947 |
| HapII | CCGG | 6 cut(s) | 51, 218, 342, 410, 521, 948 |
| HhaI | GCGC | 1 cut(s) | 852 |
| Hin1I | GRCGYC | 1 cut(s) | 850 |
| Hin1II | CATG | 3 cut(s) | 291, 581, 1092 |
| Hin6I | GCGC | 1 cut(s) | 850 |
| HinP1I | GCGC | 1 cut(s) | 850 |
| HincII | GTYRAC | 1 cut(s) | 16 |
| HindII | GTYRAC | 1 cut(s) | 16 |
| HindIII | AAGCTT | 1 cut(s) | 915 |
| HinfI | GANTC | 3 cut(s) | 78, 1049, 1081 |
| HpaI | GTTAAC | 1 cut(s) | 16 |
| HpaII | CCGG | 6 cut(s) | 51, 218, 342, 410, 521, 948 |
| HphI | GGTGA | 3 cut(s) | 235, 284, 641 |
| Hpy166II | GTNNAC | 7 cut(s) | 16, 128, 243, 420, 437, 632, 674 |
| Hpy188III | TCNNGA | 5 cut(s) | 65, 129, 559, 861, 1073 |
| Hpy8I | GTNNAC | 7 cut(s) | 16, 128, 243, 420, 437, 632, 674 |
| Hpy99I | CGWCG | 1 cut(s) | 230 |
| HpyAV | CCTTC | 4 cut(s) | 151, 389, 786, 1144 |
| HpyCH4III | ACNGT | 1 cut(s) | 205 |
| HpyCH4IV | ACGT | 1 cut(s) | 928 |
| HpyCH4V | TGCA | 9 cut(s) | 102, 420, 437, 518, 574, 709, 736, 1055, 1127 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 255, 995 |
| HpyF3I | CTNAG | 8 cut(s) | 74, 184, 267, 404, 453, 741, 990, 1036 |
| HpySE526I | ACGT | 1 cut(s) | 928 |
| Hsp92I | GRCGYC | 1 cut(s) | 850 |
| Hsp92II | CATG | 3 cut(s) | 291, 581, 1092 |
| HspAI | GCGC | 1 cut(s) | 850 |
| KasI | GGCGCC | 1 cut(s) | 849 |
| KspAI | GTTAAC | 1 cut(s) | 16 |
| Kzo9I | GATC | 4 cut(s) | 70, 484, 772, 982 |
| LguI | GCTCTTC | 1 cut(s) | 807 |
| LmnI | GCTCC | 1 cut(s) | 1063 |
| Lsp1109I | GCAGC | 5 cut(s) | 499, 502, 577, 1067, 1111 |
| LweI | GCATC | 6 cut(s) | 89, 111, 231, 258, 561, 682 |
| MaeI | CTAG | 6 cut(s) | 21, 26, 308, 543, 861, 1067 |
| MaeII | ACGT | 1 cut(s) | 928 |
| MaeIII | GTNAC | 1 cut(s) | 460 |
| MalI | GATC | 4 cut(s) | 72, 486, 774, 984 |
| MboI | GATC | 4 cut(s) | 70, 484, 772, 982 |
| MboII | GAAGA | 6 cut(s) | 22, 133, 136, 593, 794, 1104 |
| MfeI | CAATTG | 1 cut(s) | 427 |
| MflI | RGATCY | 1 cut(s) | 70 |
| MhlI | GDGCHC | 2 cut(s) | 422, 439 |
| MluCI | AATT | 9 cut(s) | 427, 615, 657, 806, 892, 958, 1002, 1108, 1143 |
| Mly113I | GGCGCC | 1 cut(s) | 850 |
| MlyI | GAGTC | 1 cut(s) | 87 |
| MmeI | TCCRAC | 2 cut(s) | 208, 628 |
| Mph1103I | ATGCAT | 1 cut(s) | 104 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1080 |
| MseI | TTAA | 2 cut(s) | 15, 1146 |
| MspI | CCGG | 6 cut(s) | 51, 218, 342, 410, 521, 948 |
| MspR9I | CCNGG | 3 cut(s) | 57, 219, 377 |
| MunI | CAATTG | 1 cut(s) | 427 |
| MvaI | CCWGG | 2 cut(s) | 57, 377 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 255, 995 |
| NarI | GGCGCC | 1 cut(s) | 850 |
| NciI | CCSGG | 1 cut(s) | 219 |
| NdeII | GATC | 4 cut(s) | 70, 484, 772, 982 |
| NlaIII | CATG | 3 cut(s) | 291, 581, 1092 |
| NlaIV | GGNNCC | 4 cut(s) | 293, 700, 851, 887 |
| NmuCI | GTSAC | 1 cut(s) | 460 |
| NsiI | ATGCAT | 1 cut(s) | 104 |
| PaeR7I | CTCGAG | 1 cut(s) | 65 |
| PciSI | GCTCTTC | 1 cut(s) | 807 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1080 |
| PfeI | GAWTC | 2 cut(s) | 1049, 1081 |
| PinAI | ACCGGT | 1 cut(s) | 520 |
| PkrI | GCNGC | 5 cut(s) | 514, 517, 592, 1057, 1126 |
| PleI | GAGTC | 1 cut(s) | 86 |
| PluTI | GGCGCC | 1 cut(s) | 853 |
| PpsI | GAGTC | 1 cut(s) | 86 |
| PpuMI | RGGWCCY | 1 cut(s) | 292 |
| Psp5II | RGGWCCY | 1 cut(s) | 292 |
| Psp6I | CCWGG | 2 cut(s) | 55, 375 |
| PspGI | CCWGG | 2 cut(s) | 55, 375 |
| PspN4I | GGNNCC | 4 cut(s) | 293, 700, 851, 887 |
| PspPI | GGNCC | 3 cut(s) | 53, 292, 886 |
| PspPPI | RGGWCCY | 1 cut(s) | 292 |
| PstI | CTGCAG | 2 cut(s) | 711, 1057 |
| PsuI | RGATCY | 1 cut(s) | 70 |
| RsaI | GTAC | 1 cut(s) | 178 |
| RsaNI | GTAC | 1 cut(s) | 177 |
| SapI | GCTCTTC | 1 cut(s) | 807 |
| SaqAI | TTAA | 2 cut(s) | 15, 1146 |
| SatI | GCNGC | 5 cut(s) | 513, 516, 591, 1056, 1125 |
| Sau3AI | GATC | 4 cut(s) | 70, 484, 772, 982 |
| Sau96I | GGNCC | 3 cut(s) | 53, 292, 886 |
| SchI | GAGTC | 1 cut(s) | 87 |
| ScrFI | CCNGG | 3 cut(s) | 57, 219, 377 |
| SduI | GDGCHC | 2 cut(s) | 422, 439 |
| SfaNI | GCATC | 6 cut(s) | 89, 111, 231, 258, 561, 682 |
| SfcI | CTRYAG | 2 cut(s) | 707, 1053 |
| SfoI | GGCGCC | 1 cut(s) | 851 |
| Sfr274I | CTCGAG | 1 cut(s) | 65 |
| SinI | GGWCC | 3 cut(s) | 53, 292, 886 |
| SlaI | CTCGAG | 1 cut(s) | 65 |
| SmlI | CTYRAG | 1 cut(s) | 65 |
| SmoI | CTYRAG | 1 cut(s) | 65 |
| Sse9I | AATT | 9 cut(s) | 427, 615, 657, 806, 892, 958, 1002, 1108, 1143 |
| SsiI | CCGC | 2 cut(s) | 238, 695 |
| SspDI | GGCGCC | 1 cut(s) | 849 |
| SspMI | CTAG | 6 cut(s) | 21, 26, 308, 543, 861, 1067 |
| StyD4I | CCNGG | 3 cut(s) | 55, 217, 375 |
| StyI | CCWWGG | 2 cut(s) | 536, 831 |
| TaaI | ACNGT | 1 cut(s) | 205 |
| TaiI | ACGT | 1 cut(s) | 931 |
| TaqI | TCGA | 3 cut(s) | 66, 81, 558 |
| TasI | AATT | 9 cut(s) | 427, 615, 657, 806, 892, 958, 1002, 1108, 1143 |
| TfiI | GAWTC | 2 cut(s) | 1049, 1081 |
| Tru1I | TTAA | 2 cut(s) | 15, 1146 |
| Tru9I | TTAA | 2 cut(s) | 15, 1146 |
| TscAI | CASTG | 2 cut(s) | 208, 471 |
| TseFI | GTSAC | 1 cut(s) | 460 |
| TseI | GCWGC | 5 cut(s) | 512, 515, 590, 1055, 1124 |
| Tsp45I | GTSAC | 1 cut(s) | 460 |
| TspDTI | ATGAA | 6 cut(s) | 408, 594, 773, 834, 1035, 1121 |
| TspGWI | ACGGA | 2 cut(s) | 734, 756 |
| TspRI | CASTG | 2 cut(s) | 208, 471 |
| VneI | GTGCAC | 2 cut(s) | 418, 435 |
| VpaK11BI | GGWCC | 3 cut(s) | 53, 292, 886 |
| XapI | RAATTY | 1 cut(s) | 1108 |
| XbaI | TCTAGA | 1 cut(s) | 860 |
| XhoI | CTCGAG | 1 cut(s) | 65 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1080 |
| XspI | CTAG | 6 cut(s) | 21, 26, 308, 543, 861, 1067 |
| Zsp2I | ATGCAT | 1 cut(s) | 104 |