Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 601 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 459 |
| Acc36I | ACCTGC | 1 cut(s) | 601 |
| AccB1I | GGYRCC | 1 cut(s) | 784 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 472 |
| AccI | GTMKAC | 1 cut(s) | 709 |
| AccII | CGCG | 1 cut(s) | 705 |
| AciI | CCGC | 3 cut(s) | 149, 705, 782 |
| AclWI | GGATC | 2 cut(s) | 363, 935 |
| AcoI | YGGCCR | 1 cut(s) | 319 |
| AcsI | RAATTY | 2 cut(s) | 420, 608 |
| AfaI | GTAC | 3 cut(s) | 118, 702, 903 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 213, 214, 331, 332, 370, 472, 794 |
| AflIII | ACRYGT | 1 cut(s) | 88 |
| AgeI | ACCGGT | 1 cut(s) | 691 |
| AgsI | TTSAA | 2 cut(s) | 728, 959 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 226 |
| AjnI | CCWGG | 3 cut(s) | 81, 620, 854 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 792, 824 |
| AluBI | AGCT | 4 cut(s) | 430, 814, 843, 964 |
| AluI | AGCT | 4 cut(s) | 430, 814, 843, 964 |
| Alw26I | GTCTC | 1 cut(s) | 467 |
| AlwI | GGATC | 2 cut(s) | 363, 935 |
| AoxI | GGCC | 2 cut(s) | 319, 489 |
| ApeKI | GCWGC | 1 cut(s) | 524 |
| ApoI | RAATTY | 2 cut(s) | 420, 608 |
| AsiGI | ACCGGT | 1 cut(s) | 691 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 254, 963 |
| AspLEI | GCGC | 2 cut(s) | 479, 882 |
| AspS9I | GGNCC | 4 cut(s) | 281, 490, 800, 859 |
| AsuHPI | GGTGA | 3 cut(s) | 259, 400, 582 |
| AvaII | GGWCC | 3 cut(s) | 281, 800, 859 |
| BanI | GGYRCC | 1 cut(s) | 784 |
| BauI | CACGAG | 1 cut(s) | 375 |
| BbvI | GCAGC | 1 cut(s) | 511 |
| BccI | CCATC | 2 cut(s) | 788, 799 |
| BceAI | ACGGC | 1 cut(s) | 334 |
| BciT130I | CCWGG | 3 cut(s) | 83, 622, 856 |
| BciVI | GTATCC | 1 cut(s) | 826 |
| BclI | TGATCA | 2 cut(s) | 652, 949 |
| BcoDI | GTCTC | 1 cut(s) | 467 |
| BfaI | CTAG | 2 cut(s) | 425, 431 |
| BfmI | CTRYAG | 1 cut(s) | 525 |
| BfoI | RGCGCY | 1 cut(s) | 480 |
| BfuAI | ACCTGC | 1 cut(s) | 601 |
| BfuI | GTATCC | 1 cut(s) | 826 |
| BglII | AGATCT | 1 cut(s) | 647 |
| BisI | GCNGC | 1 cut(s) | 525 |
| BlsI | GCNGC | 1 cut(s) | 526 |
| Bme1390I | CCNGG | 3 cut(s) | 83, 622, 856 |
| Bme18I | GGWCC | 3 cut(s) | 281, 800, 859 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 226 |
| BmgT120I | GGNCC | 4 cut(s) | 281, 490, 800, 859 |
| BmiI | GGNNCC | 4 cut(s) | 282, 583, 786, 860 |
| BmrFI | CCNGG | 3 cut(s) | 83, 622, 856 |
| BmsI | GCATC | 1 cut(s) | 256 |
| BpmI | CTGGAG | 2 cut(s) | 604, 911 |
| BpuEI | CTTGAG | 1 cut(s) | 774 |
| Bsa29I | ATCGAT | 1 cut(s) | 264 |
| BsaAI | YACGTR | 1 cut(s) | 905 |
| BsaBI | GATNNNNATC | 1 cut(s) | 504 |
| BsaJI | CCNNGG | 3 cut(s) | 144, 369, 855 |
| BsaWI | WCCGGW | 2 cut(s) | 443, 691 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 213, 214, 331, 332, 370, 472, 794 |
| Bse118I | RCCGGY | 1 cut(s) | 691 |
| Bse8I | GATNNNNATC | 1 cut(s) | 504 |
| BseBI | CCWGG | 3 cut(s) | 83, 622, 856 |
| BseCI | ATCGAT | 1 cut(s) | 264 |
| BseDI | CCNNGG | 3 cut(s) | 144, 369, 855 |
| BseGI | GGATG | 4 cut(s) | 6, 223, 295, 922 |
| BseJI | GATNNNNATC | 1 cut(s) | 504 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 213, 214, 331, 332, 370, 472, 794 |
| BseMII | CTCAG | 1 cut(s) | 115 |
| BseRI | GAGGAG | 1 cut(s) | 350 |
| BseXI | GCAGC | 1 cut(s) | 511 |
| Bsh1236I | CGCG | 1 cut(s) | 705 |
| Bsh1285I | CGRYCG | 1 cut(s) | 709 |
| BshFI | GGCC | 2 cut(s) | 321, 491 |
| BshNI | GGYRCC | 1 cut(s) | 784 |
| BshTI | ACCGGT | 1 cut(s) | 691 |
| BshVI | ATCGAT | 1 cut(s) | 264 |
| BsiEI | CGRYCG | 1 cut(s) | 709 |
| BsiSI | CCGG | 2 cut(s) | 444, 692 |
| BslFI | GGGAC | 5 cut(s) | 294, 348, 422, 546, 872 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 213, 214, 331, 332, 370, 472, 794 |
| BsmAI | GTCTC | 1 cut(s) | 467 |
| BsmFI | GGGAC | 5 cut(s) | 294, 348, 422, 546, 872 |
| BsnI | GGCC | 2 cut(s) | 321, 491 |
| Bsp143I | GATC | 8 cut(s) | 12, 178, 191, 355, 647, 652, 940, 949 |
| BspACI | CCGC | 3 cut(s) | 149, 705, 782 |
| BspANI | GGCC | 2 cut(s) | 321, 491 |
| BspCNI | CTCAG | 1 cut(s) | 114 |
| BspDI | ATCGAT | 1 cut(s) | 264 |
| BspFNI | CGCG | 1 cut(s) | 705 |
| BspLI | GGNNCC | 4 cut(s) | 282, 583, 786, 860 |
| BspMAI | CTGCAG | 1 cut(s) | 529 |
| BspMI | ACCTGC | 1 cut(s) | 601 |
| BspPI | GGATC | 2 cut(s) | 363, 935 |
| BspT107I | GGYRCC | 1 cut(s) | 784 |
| BsrFI | RCCGGY | 1 cut(s) | 691 |
| BssAI | RCCGGY | 1 cut(s) | 691 |
| BssECI | CCNNGG | 3 cut(s) | 144, 369, 855 |
| BssMI | GATC | 8 cut(s) | 12, 178, 191, 355, 647, 652, 940, 949 |
| BssSI | CACGAG | 1 cut(s) | 375 |
| BssT1I | CCWWGG | 2 cut(s) | 144, 369 |
| Bst2BI | CACGAG | 1 cut(s) | 375 |
| Bst2UI | CCWGG | 3 cut(s) | 83, 622, 856 |
| Bst4CI | ACNGT | 3 cut(s) | 226, 247, 285 |
| Bst6I | CTCTTC | 2 cut(s) | 144, 723 |
| BstBAI | YACGTR | 1 cut(s) | 905 |
| BstC8I | GCNNGC | 1 cut(s) | 586 |
| BstDEI | CTNAG | 1 cut(s) | 101 |
| BstF5I | GGATG | 4 cut(s) | 6, 223, 295, 922 |
| BstFNI | CGCG | 1 cut(s) | 705 |
| BstH2I | RGCGCY | 1 cut(s) | 480 |
| BstHHI | GCGC | 2 cut(s) | 479, 882 |
| BstKTI | GATC | 8 cut(s) | 15, 181, 194, 358, 650, 655, 943, 952 |
| BstMAI | GTCTC | 1 cut(s) | 467 |
| BstMBI | GATC | 8 cut(s) | 12, 178, 191, 355, 647, 652, 940, 949 |
| BstMCI | CGRYCG | 1 cut(s) | 709 |
| BstNI | CCWGG | 3 cut(s) | 83, 622, 856 |
| BstNSI | RCATGY | 1 cut(s) | 92 |
| BstSCI | CCNGG | 3 cut(s) | 81, 620, 854 |
| BstSFI | CTRYAG | 1 cut(s) | 525 |
| BstSNI | TACGTA | 1 cut(s) | 905 |
| BstUI | CGCG | 1 cut(s) | 705 |
| BstV1I | GCAGC | 1 cut(s) | 511 |
| BstX2I | RGATCY | 2 cut(s) | 355, 647 |
| BstYI | RGATCY | 2 cut(s) | 355, 647 |
| Bsu15I | ATCGAT | 1 cut(s) | 264 |
| BsuI | GTATCC | 1 cut(s) | 826 |
| BsuRI | GGCC | 2 cut(s) | 321, 491 |
| BsuTUI | ATCGAT | 1 cut(s) | 264 |
| BtsCI | GGATG | 4 cut(s) | 6, 223, 295, 922 |
| BtsIMutI | CAGTG | 1 cut(s) | 109 |
| BveI | ACCTGC | 1 cut(s) | 601 |
| Cac8I | GCNNGC | 1 cut(s) | 586 |
| CfoI | GCGC | 2 cut(s) | 479, 882 |
| Cfr10I | RCCGGY | 1 cut(s) | 691 |
| Cfr13I | GGNCC | 4 cut(s) | 281, 490, 800, 859 |
| ClaI | ATCGAT | 1 cut(s) | 264 |
| Csp6I | GTAC | 3 cut(s) | 117, 701, 902 |
| CspAI | ACCGGT | 1 cut(s) | 691 |
| CviAII | CATG | 5 cut(s) | 53, 89, 656, 746, 777 |
| CviQI | GTAC | 3 cut(s) | 117, 701, 902 |
| DdeI | CTNAG | 1 cut(s) | 101 |
| DpnI | GATC | 8 cut(s) | 14, 180, 193, 357, 649, 654, 942, 951 |
| DpnII | GATC | 8 cut(s) | 12, 178, 191, 355, 647, 652, 940, 949 |
| DraI | TTTAAA | 1 cut(s) | 874 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 459 |
| DriI | GACNNNNNGTC | 1 cut(s) | 226 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 459 |
| EaeI | YGGCCR | 1 cut(s) | 319 |
| Eam1104I | CTCTTC | 2 cut(s) | 144, 723 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 226 |
| EarI | CTCTTC | 2 cut(s) | 144, 723 |
| Eco105I | TACGTA | 1 cut(s) | 905 |
| Eco130I | CCWWGG | 2 cut(s) | 144, 369 |
| Eco47I | GGWCC | 3 cut(s) | 281, 800, 859 |
| EcoO109I | RGGNCCY | 1 cut(s) | 490 |
| EcoRII | CCWGG | 3 cut(s) | 81, 620, 854 |
| EcoT14I | CCWWGG | 2 cut(s) | 144, 369 |
| ErhI | CCWWGG | 2 cut(s) | 144, 369 |
| FaeI | CATG | 5 cut(s) | 56, 92, 659, 749, 780 |
| FaiI | YATR | 7 cut(s) | 54, 90, 261, 558, 657, 747, 778 |
| FalI | AAGNNNNNCTT | 3 cut(s) | 555, 587, 953 |
| FaqI | GGGAC | 5 cut(s) | 294, 348, 422, 546, 872 |
| FatI | CATG | 5 cut(s) | 52, 88, 655, 745, 776 |
| FbaI | TGATCA | 2 cut(s) | 652, 949 |
| FblI | GTMKAC | 1 cut(s) | 709 |
| Fnu4HI | GCNGC | 1 cut(s) | 525 |
| FokI | GGATG | 3 cut(s) | 230, 302, 929 |
| Fsp4HI | GCNGC | 1 cut(s) | 525 |
| FspBI | CTAG | 2 cut(s) | 425, 431 |
| GlaI | GCGC | 2 cut(s) | 478, 881 |
| GluI | GCNGC | 1 cut(s) | 525 |
| GsuI | CTGGAG | 2 cut(s) | 604, 911 |
| HaeII | RGCGCY | 1 cut(s) | 480 |
| HaeIII | GGCC | 2 cut(s) | 321, 491 |
| HapII | CCGG | 2 cut(s) | 444, 692 |
| HhaI | GCGC | 2 cut(s) | 479, 882 |
| Hin1II | CATG | 5 cut(s) | 56, 92, 659, 749, 780 |
| Hin6I | GCGC | 2 cut(s) | 477, 880 |
| HinP1I | GCGC | 2 cut(s) | 477, 880 |
| HincII | GTYRAC | 1 cut(s) | 710 |
| HindII | GTYRAC | 1 cut(s) | 710 |
| HindIII | AAGCTT | 2 cut(s) | 841, 962 |
| HinfI | GANTC | 5 cut(s) | 46, 460, 534, 749, 922 |
| HpaII | CCGG | 2 cut(s) | 444, 692 |
| HphI | GGTGA | 3 cut(s) | 259, 400, 582 |
| Hpy166II | GTNNAC | 1 cut(s) | 710 |
| Hpy188I | TCNGA | 6 cut(s) | 75, 289, 459, 607, 652, 822 |
| Hpy188III | TCNNGA | 8 cut(s) | 10, 16, 241, 425, 497, 572, 791, 928 |
| Hpy8I | GTNNAC | 1 cut(s) | 710 |
| Hpy99I | CGWCG | 3 cut(s) | 289, 388, 714 |
| HpyAV | CCTTC | 4 cut(s) | 271, 503, 676, 881 |
| HpyCH4III | ACNGT | 3 cut(s) | 226, 247, 285 |
| HpyCH4IV | ACGT | 2 cut(s) | 568, 904 |
| HpyCH4V | TGCA | 5 cut(s) | 56, 404, 504, 512, 527 |
| HpyF3I | CTNAG | 1 cut(s) | 101 |
| HpySE526I | ACGT | 2 cut(s) | 568, 904 |
| Hsp92II | CATG | 5 cut(s) | 56, 92, 659, 749, 780 |
| HspAI | GCGC | 2 cut(s) | 477, 880 |
| Ksp22I | TGATCA | 2 cut(s) | 652, 949 |
| Kzo9I | GATC | 8 cut(s) | 12, 178, 191, 355, 647, 652, 940, 949 |
| LmnI | GCTCC | 1 cut(s) | 581 |
| Lsp1109I | GCAGC | 1 cut(s) | 511 |
| LweI | GCATC | 1 cut(s) | 256 |
| MaeI | CTAG | 2 cut(s) | 425, 431 |
| MaeII | ACGT | 2 cut(s) | 568, 904 |
| MalI | GATC | 8 cut(s) | 14, 180, 193, 357, 649, 654, 942, 951 |
| MboI | GATC | 8 cut(s) | 12, 178, 191, 355, 647, 652, 940, 949 |
| MboII | GAAGA | 2 cut(s) | 131, 740 |
| MflI | RGATCY | 2 cut(s) | 355, 647 |
| MluCI | AATT | 4 cut(s) | 19, 250, 420, 608 |
| MlyI | GAGTC | 3 cut(s) | 40, 469, 528 |
| MmeI | TCCRAC | 5 cut(s) | 267, 490, 651, 800, 894 |
| MnlI | CCTC | 6 cut(s) | 218, 371, 763, 791, 798, 889 |
| MroXI | GAANNNNTTC | 2 cut(s) | 254, 963 |
| MseI | TTAA | 3 cut(s) | 414, 630, 873 |
| MspI | CCGG | 2 cut(s) | 444, 692 |
| MspR9I | CCNGG | 3 cut(s) | 83, 622, 856 |
| MvaI | CCWGG | 3 cut(s) | 83, 622, 856 |
| MvnI | CGCG | 1 cut(s) | 705 |
| NdeII | GATC | 8 cut(s) | 12, 178, 191, 355, 647, 652, 940, 949 |
| NlaIII | CATG | 5 cut(s) | 56, 92, 659, 749, 780 |
| NlaIV | GGNNCC | 4 cut(s) | 282, 583, 786, 860 |
| NspI | RCATGY | 1 cut(s) | 92 |
| PaqCI | CACCTGC | 1 cut(s) | 601 |
| PciI | ACATGT | 1 cut(s) | 88 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 187 |
| PdmI | GAANNNNTTC | 2 cut(s) | 254, 963 |
| PfeI | GAWTC | 2 cut(s) | 749, 922 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 472 |
| PfoI | TCCNGGA | 1 cut(s) | 620 |
| PinAI | ACCGGT | 1 cut(s) | 691 |
| PkrI | GCNGC | 1 cut(s) | 526 |
| PleI | GAGTC | 3 cut(s) | 40, 468, 528 |
| PpsI | GAGTC | 3 cut(s) | 40, 468, 528 |
| Ppu21I | YACGTR | 1 cut(s) | 905 |
| PscI | ACATGT | 1 cut(s) | 88 |
| Psp6I | CCWGG | 3 cut(s) | 81, 620, 854 |
| PspGI | CCWGG | 3 cut(s) | 81, 620, 854 |
| PspN4I | GGNNCC | 4 cut(s) | 282, 583, 786, 860 |
| PspPI | GGNCC | 4 cut(s) | 281, 490, 800, 859 |
| PstI | CTGCAG | 1 cut(s) | 529 |
| PsuI | RGATCY | 2 cut(s) | 355, 647 |
| RsaI | GTAC | 3 cut(s) | 118, 702, 903 |
| RsaNI | GTAC | 3 cut(s) | 117, 701, 902 |
| SalI | GTCGAC | 1 cut(s) | 708 |
| SaqAI | TTAA | 3 cut(s) | 414, 630, 873 |
| SatI | GCNGC | 1 cut(s) | 525 |
| Sau3AI | GATC | 8 cut(s) | 12, 178, 191, 355, 647, 652, 940, 949 |
| Sau96I | GGNCC | 4 cut(s) | 281, 490, 800, 859 |
| SchI | GAGTC | 3 cut(s) | 40, 469, 528 |
| ScrFI | CCNGG | 3 cut(s) | 83, 622, 856 |
| SetI | ASST | 9 cut(s) | 432, 571, 595, 725, 816, 845, 900, 907, 966 |
| SfaNI | GCATC | 1 cut(s) | 256 |
| SfcI | CTRYAG | 1 cut(s) | 525 |
| SinI | GGWCC | 3 cut(s) | 281, 800, 859 |
| SmlI | CTYRAG | 1 cut(s) | 789 |
| SmoI | CTYRAG | 1 cut(s) | 789 |
| SnaBI | TACGTA | 1 cut(s) | 905 |
| Sse9I | AATT | 4 cut(s) | 19, 250, 420, 608 |
| SsiI | CCGC | 3 cut(s) | 149, 705, 782 |
| SspI | AATATT | 1 cut(s) | 166 |
| SspMI | CTAG | 2 cut(s) | 425, 431 |
| StyD4I | CCNGG | 3 cut(s) | 81, 620, 854 |
| StyI | CCWWGG | 2 cut(s) | 144, 369 |
| TaaI | ACNGT | 3 cut(s) | 226, 247, 285 |
| TaiI | ACGT | 2 cut(s) | 571, 907 |
| TaqI | TCGA | 2 cut(s) | 264, 709 |
| TaqII | GACCGA | 2 cut(s) | 817, 876 |
| TasI | AATT | 4 cut(s) | 19, 250, 420, 608 |
| TfiI | GAWTC | 2 cut(s) | 749, 922 |
| Tru1I | TTAA | 3 cut(s) | 414, 630, 873 |
| Tru9I | TTAA | 3 cut(s) | 414, 630, 873 |
| TscAI | CASTG | 1 cut(s) | 109 |
| TseI | GCWGC | 1 cut(s) | 524 |
| TspDTI | ATGAA | 3 cut(s) | 17, 432, 762 |
| TspGWI | ACGGA | 3 cut(s) | 353, 473, 727 |
| TspRI | CASTG | 1 cut(s) | 109 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 472 |
| VpaK11BI | GGWCC | 3 cut(s) | 281, 800, 859 |
| XapI | RAATTY | 2 cut(s) | 420, 608 |
| XbaI | TCTAGA | 1 cut(s) | 424 |
| XceI | RCATGY | 1 cut(s) | 92 |
| XmiI | GTMKAC | 1 cut(s) | 709 |
| XmnI | GAANNNNTTC | 2 cut(s) | 254, 963 |
| XspI | CTAG | 2 cut(s) | 425, 431 |