Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 429 |
| AciI | CCGC | 4 cut(s) | 35, 494, 555, 797 |
| AclWI | GGATC | 2 cut(s) | 468, 482 |
| AcuI | CTGAAG | 1 cut(s) | 61 |
| AcvI | CACGTG | 1 cut(s) | 651 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 256, 440, 490, 583 |
| AflIII | ACRYGT | 1 cut(s) | 648 |
| AgsI | TTSAA | 1 cut(s) | 22 |
| AjnI | CCWGG | 1 cut(s) | 342 |
| AluBI | AGCT | 2 cut(s) | 599, 632 |
| AluI | AGCT | 2 cut(s) | 599, 632 |
| Alw21I | GWGCWC | 1 cut(s) | 200 |
| Alw26I | GTCTC | 1 cut(s) | 460 |
| AlwI | GGATC | 2 cut(s) | 468, 482 |
| AoxI | GGCC | 3 cut(s) | 389, 480, 574 |
| ApeKI | GCWGC | 1 cut(s) | 235 |
| AspS9I | GGNCC | 2 cut(s) | 389, 481 |
| AsuC2I | CCSGG | 2 cut(s) | 434, 663 |
| AsuHPI | GGTGA | 5 cut(s) | 358, 394, 406, 690, 748 |
| AsuII | TTCGAA | 1 cut(s) | 565 |
| BaeGI | GKGCMC | 1 cut(s) | 432 |
| BanI | GGYRCC | 1 cut(s) | 429 |
| BbrPI | CACGTG | 1 cut(s) | 651 |
| Bbv12I | GWGCWC | 1 cut(s) | 200 |
| BbvI | GCAGC | 1 cut(s) | 247 |
| BccI | CCATC | 1 cut(s) | 373 |
| BceAI | ACGGC | 1 cut(s) | 784 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 734, 768 |
| BciT130I | CCWGG | 1 cut(s) | 344 |
| BclI | TGATCA | 1 cut(s) | 760 |
| BcnI | CCSGG | 2 cut(s) | 434, 663 |
| BcoDI | GTCTC | 1 cut(s) | 460 |
| BfaI | CTAG | 4 cut(s) | 26, 47, 729, 750 |
| BfmI | CTRYAG | 1 cut(s) | 57 |
| BglII | AGATCT | 1 cut(s) | 528 |
| BisI | GCNGC | 3 cut(s) | 35, 236, 797 |
| BlsI | GCNGC | 3 cut(s) | 36, 237, 798 |
| Bme1390I | CCNGG | 3 cut(s) | 344, 434, 663 |
| BmgT120I | GGNCC | 2 cut(s) | 389, 481 |
| BmiI | GGNNCC | 1 cut(s) | 431 |
| BmrFI | CCNGG | 3 cut(s) | 344, 434, 663 |
| BmsI | GCATC | 3 cut(s) | 364, 570, 675 |
| BpmI | CTGGAG | 1 cut(s) | 800 |
| Bpu14I | TTCGAA | 1 cut(s) | 565 |
| BpuEI | CTTGAG | 1 cut(s) | 152 |
| BpuMI | CCSGG | 2 cut(s) | 434, 663 |
| BsaAI | YACGTR | 1 cut(s) | 651 |
| BsaJI | CCNNGG | 2 cut(s) | 133, 477 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 84, 114 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 256, 440, 490, 583 |
| Bse118I | RCCGGY | 1 cut(s) | 416 |
| Bse1I | ACTGG | 1 cut(s) | 445 |
| Bse3DI | GCAATG | 1 cut(s) | 220 |
| BseBI | CCWGG | 1 cut(s) | 344 |
| BseDI | CCNNGG | 2 cut(s) | 133, 477 |
| BseGI | GGATG | 1 cut(s) | 331 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 256, 440, 490, 583 |
| BseMI | GCAATG | 1 cut(s) | 220 |
| BseNI | ACTGG | 1 cut(s) | 445 |
| BseSI | GKGCMC | 1 cut(s) | 432 |
| BseXI | GCAGC | 1 cut(s) | 247 |
| Bsh1285I | CGRYCG | 2 cut(s) | 257, 559 |
| BshFI | GGCC | 3 cut(s) | 391, 482, 576 |
| BshNI | GGYRCC | 1 cut(s) | 429 |
| BsiEI | CGRYCG | 2 cut(s) | 257, 559 |
| BsiHKAI | GWGCWC | 1 cut(s) | 200 |
| BsiSI | CCGG | 5 cut(s) | 417, 434, 491, 592, 663 |
| BslFI | GGGAC | 2 cut(s) | 276, 645 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 256, 440, 490, 583 |
| BsmAI | GTCTC | 1 cut(s) | 460 |
| BsmFI | GGGAC | 2 cut(s) | 276, 645 |
| BsnI | GGCC | 3 cut(s) | 391, 482, 576 |
| Bsp119I | TTCGAA | 1 cut(s) | 565 |
| Bsp1286I | GDGCHC | 2 cut(s) | 200, 432 |
| Bsp143I | GATC | 8 cut(s) | 66, 254, 286, 333, 473, 487, 528, 760 |
| BspACI | CCGC | 4 cut(s) | 35, 494, 555, 797 |
| BspANI | GGCC | 3 cut(s) | 391, 482, 576 |
| BspLI | GGNNCC | 1 cut(s) | 431 |
| BspMAI | CTGCAG | 1 cut(s) | 61 |
| BspPI | GGATC | 2 cut(s) | 468, 482 |
| BspT104I | TTCGAA | 1 cut(s) | 565 |
| BspT107I | GGYRCC | 1 cut(s) | 429 |
| BsrDI | GCAATG | 1 cut(s) | 220 |
| BsrFI | RCCGGY | 1 cut(s) | 416 |
| BsrI | ACTGG | 1 cut(s) | 445 |
| BssAI | RCCGGY | 1 cut(s) | 416 |
| BssECI | CCNNGG | 2 cut(s) | 133, 477 |
| BssMI | GATC | 8 cut(s) | 66, 254, 286, 333, 473, 487, 528, 760 |
| BssT1I | CCWWGG | 2 cut(s) | 133, 477 |
| Bst2UI | CCWGG | 1 cut(s) | 344 |
| Bst4CI | ACNGT | 1 cut(s) | 611 |
| BstBAI | YACGTR | 1 cut(s) | 651 |
| BstBI | TTCGAA | 1 cut(s) | 565 |
| BstC8I | GCNNGC | 4 cut(s) | 12, 162, 585, 597 |
| BstDEI | CTNAG | 1 cut(s) | 209 |
| BstF5I | GGATG | 1 cut(s) | 331 |
| BstKTI | GATC | 8 cut(s) | 69, 257, 289, 336, 476, 490, 531, 763 |
| BstMAI | GTCTC | 1 cut(s) | 460 |
| BstMBI | GATC | 8 cut(s) | 66, 254, 286, 333, 473, 487, 528, 760 |
| BstMCI | CGRYCG | 2 cut(s) | 257, 559 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 663, 793 |
| BstNI | CCWGG | 1 cut(s) | 344 |
| BstNSI | RCATGY | 1 cut(s) | 164 |
| BstSCI | CCNGG | 3 cut(s) | 342, 432, 661 |
| BstSFI | CTRYAG | 1 cut(s) | 57 |
| BstSLI | GKGCMC | 1 cut(s) | 432 |
| BstV1I | GCAGC | 1 cut(s) | 247 |
| BstX2I | RGATCY | 1 cut(s) | 528 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 778 |
| BstYI | RGATCY | 1 cut(s) | 528 |
| BsuRI | GGCC | 3 cut(s) | 391, 482, 576 |
| BtgZI | GCGATG | 2 cut(s) | 259, 392 |
| BtsCI | GGATG | 1 cut(s) | 331 |
| BtsI | GCAGTG | 1 cut(s) | 66 |
| BtsIMutI | CAGTG | 1 cut(s) | 66 |
| Cac8I | GCNNGC | 4 cut(s) | 12, 162, 585, 597 |
| Cfr10I | RCCGGY | 1 cut(s) | 416 |
| Cfr13I | GGNCC | 2 cut(s) | 389, 481 |
| CviAII | CATG | 6 cut(s) | 109, 161, 452, 625, 705, 764 |
| CviJI | RGCY | 9 cut(s) | 14, 391, 420, 482, 562, 576, 599, 632, 796 |
| CviKI_1 | RGCY | 9 cut(s) | 14, 391, 420, 482, 562, 576, 599, 632, 796 |
| DdeI | CTNAG | 1 cut(s) | 209 |
| DpnI | GATC | 8 cut(s) | 68, 256, 288, 335, 475, 489, 530, 762 |
| DpnII | GATC | 8 cut(s) | 66, 254, 286, 333, 473, 487, 528, 760 |
| EciI | GGCGGA | 1 cut(s) | 509 |
| Eco130I | CCWWGG | 2 cut(s) | 133, 477 |
| Eco57I | CTGAAG | 1 cut(s) | 61 |
| Eco72I | CACGTG | 1 cut(s) | 651 |
| EcoRII | CCWGG | 1 cut(s) | 342 |
| EcoT14I | CCWWGG | 2 cut(s) | 133, 477 |
| ErhI | CCWWGG | 2 cut(s) | 133, 477 |
| FaeI | CATG | 6 cut(s) | 112, 164, 455, 628, 708, 767 |
| FaiI | YATR | 8 cut(s) | 110, 162, 189, 240, 453, 626, 706, 765 |
| FaqI | GGGAC | 2 cut(s) | 276, 645 |
| FatI | CATG | 6 cut(s) | 108, 160, 451, 624, 704, 763 |
| FbaI | TGATCA | 1 cut(s) | 760 |
| Fnu4HI | GCNGC | 3 cut(s) | 35, 236, 797 |
| FokI | GGATG | 1 cut(s) | 338 |
| Fsp4HI | GCNGC | 3 cut(s) | 35, 236, 797 |
| FspBI | CTAG | 4 cut(s) | 26, 47, 729, 750 |
| GluI | GCNGC | 3 cut(s) | 35, 236, 797 |
| GsuI | CTGGAG | 1 cut(s) | 800 |
| HaeIII | GGCC | 3 cut(s) | 391, 482, 576 |
| HapII | CCGG | 5 cut(s) | 417, 434, 491, 592, 663 |
| Hin1II | CATG | 6 cut(s) | 112, 164, 455, 628, 708, 767 |
| HincII | GTYRAC | 1 cut(s) | 446 |
| HindII | GTYRAC | 1 cut(s) | 446 |
| HindIII | AAGCTT | 1 cut(s) | 597 |
| HinfI | GANTC | 3 cut(s) | 178, 264, 329 |
| HpaII | CCGG | 5 cut(s) | 417, 434, 491, 592, 663 |
| HphI | GGTGA | 5 cut(s) | 358, 394, 406, 690, 748 |
| Hpy166II | GTNNAC | 5 cut(s) | 145, 358, 446, 698, 739 |
| Hpy188I | TCNGA | 4 cut(s) | 73, 183, 607, 760 |
| Hpy188III | TCNNGA | 2 cut(s) | 88, 779 |
| Hpy8I | GTNNAC | 5 cut(s) | 145, 358, 446, 698, 739 |
| HpyAV | CCTTC | 1 cut(s) | 260 |
| HpyCH4III | ACNGT | 1 cut(s) | 611 |
| HpyCH4IV | ACGT | 2 cut(s) | 399, 650 |
| HpyCH4V | TGCA | 5 cut(s) | 4, 59, 225, 583, 745 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 663, 793 |
| HpyF3I | CTNAG | 1 cut(s) | 209 |
| HpySE526I | ACGT | 2 cut(s) | 399, 650 |
| Hsp92II | CATG | 6 cut(s) | 112, 164, 455, 628, 708, 767 |
| Ksp22I | TGATCA | 1 cut(s) | 760 |
| Kzo9I | GATC | 8 cut(s) | 66, 254, 286, 333, 473, 487, 528, 760 |
| LmnI | GCTCC | 2 cut(s) | 629, 654 |
| Lsp1109I | GCAGC | 1 cut(s) | 247 |
| LweI | GCATC | 3 cut(s) | 364, 570, 675 |
| MaeI | CTAG | 4 cut(s) | 26, 47, 729, 750 |
| MaeII | ACGT | 2 cut(s) | 399, 650 |
| MaeIII | GTNAC | 1 cut(s) | 611 |
| MalI | GATC | 8 cut(s) | 68, 256, 288, 335, 475, 489, 530, 762 |
| MboI | GATC | 8 cut(s) | 66, 254, 286, 333, 473, 487, 528, 760 |
| MboII | GAAGA | 1 cut(s) | 767 |
| MflI | RGATCY | 1 cut(s) | 528 |
| MhlI | GDGCHC | 2 cut(s) | 200, 432 |
| MluCI | AATT | 2 cut(s) | 112, 127 |
| MlyI | GAGTC | 1 cut(s) | 258 |
| MmeI | TCCRAC | 3 cut(s) | 96, 493, 585 |
| MseI | TTAA | 1 cut(s) | 522 |
| MslI | CAYNNNNRTG | 2 cut(s) | 319, 703 |
| MspI | CCGG | 5 cut(s) | 417, 434, 491, 592, 663 |
| MspR9I | CCNGG | 3 cut(s) | 344, 434, 663 |
| MvaI | CCWGG | 1 cut(s) | 344 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 663, 793 |
| NciI | CCSGG | 2 cut(s) | 434, 663 |
| NdeII | GATC | 8 cut(s) | 66, 254, 286, 333, 473, 487, 528, 760 |
| NlaIII | CATG | 6 cut(s) | 112, 164, 455, 628, 708, 767 |
| NlaIV | GGNNCC | 1 cut(s) | 431 |
| NmeAIII | GCCGAG | 1 cut(s) | 136 |
| NspI | RCATGY | 1 cut(s) | 164 |
| NspV | TTCGAA | 1 cut(s) | 565 |
| PaeI | GCATGC | 1 cut(s) | 164 |
| PfeI | GAWTC | 2 cut(s) | 178, 329 |
| PkrI | GCNGC | 3 cut(s) | 36, 237, 798 |
| Ple19I | CGATCG | 1 cut(s) | 257 |
| PleI | GAGTC | 1 cut(s) | 258 |
| PmaCI | CACGTG | 1 cut(s) | 651 |
| PmlI | CACGTG | 1 cut(s) | 651 |
| PpsI | GAGTC | 1 cut(s) | 258 |
| Ppu21I | YACGTR | 1 cut(s) | 651 |
| Psp6I | CCWGG | 1 cut(s) | 342 |
| PspCI | CACGTG | 1 cut(s) | 651 |
| PspGI | CCWGG | 1 cut(s) | 342 |
| PspN4I | GGNNCC | 1 cut(s) | 431 |
| PspPI | GGNCC | 2 cut(s) | 389, 481 |
| PstI | CTGCAG | 1 cut(s) | 61 |
| PsuI | RGATCY | 1 cut(s) | 528 |
| PvuI | CGATCG | 1 cut(s) | 257 |
| RseI | CAYNNNNRTG | 2 cut(s) | 319, 703 |
| SaqAI | TTAA | 1 cut(s) | 522 |
| SatI | GCNGC | 3 cut(s) | 35, 236, 797 |
| Sau3AI | GATC | 8 cut(s) | 66, 254, 286, 333, 473, 487, 528, 760 |
| Sau96I | GGNCC | 2 cut(s) | 389, 481 |
| SchI | GAGTC | 1 cut(s) | 258 |
| ScrFI | CCNGG | 3 cut(s) | 344, 434, 663 |
| SduI | GDGCHC | 2 cut(s) | 200, 432 |
| SfaNI | GCATC | 3 cut(s) | 364, 570, 675 |
| SfcI | CTRYAG | 1 cut(s) | 57 |
| SfuI | TTCGAA | 1 cut(s) | 565 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 319, 703 |
| SmlI | CTYRAG | 1 cut(s) | 167 |
| SmoI | CTYRAG | 1 cut(s) | 167 |
| SphI | GCATGC | 1 cut(s) | 164 |
| Sse9I | AATT | 2 cut(s) | 112, 127 |
| SsiI | CCGC | 4 cut(s) | 35, 494, 555, 797 |
| SspMI | CTAG | 4 cut(s) | 26, 47, 729, 750 |
| StyD4I | CCNGG | 3 cut(s) | 342, 432, 661 |
| StyI | CCWWGG | 2 cut(s) | 133, 477 |
| TaaI | ACNGT | 1 cut(s) | 611 |
| TaiI | ACGT | 2 cut(s) | 402, 653 |
| TaqI | TCGA | 4 cut(s) | 89, 253, 332, 565 |
| TasI | AATT | 2 cut(s) | 112, 127 |
| TauI | GCSGC | 2 cut(s) | 37, 799 |
| TfiI | GAWTC | 2 cut(s) | 178, 329 |
| Tru1I | TTAA | 1 cut(s) | 522 |
| Tru9I | TTAA | 1 cut(s) | 522 |
| TscAI | CASTG | 1 cut(s) | 66 |
| TseI | GCWGC | 1 cut(s) | 235 |
| TspDTI | ATGAA | 2 cut(s) | 125, 358 |
| TspRI | CASTG | 1 cut(s) | 66 |
| XceI | RCATGY | 1 cut(s) | 164 |
| XspI | CTAG | 4 cut(s) | 26, 47, 729, 750 |