ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 885 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 593 |
| AccII | CGCG | 1 cut(s) | 207 |
| AciI | CCGC | 2 cut(s) | 246, 907 |
| AclI | AACGTT | 1 cut(s) | 823 |
| AclWI | GGATC | 1 cut(s) | 337 |
| AcuI | CTGAAG | 2 cut(s) | 863, 1086 |
| AfaI | GTAC | 2 cut(s) | 291, 393 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 593, 913, 939 |
| AflII | CTTAAG | 1 cut(s) | 1388 |
| AgeI | ACCGGT | 1 cut(s) | 1244 |
| AgsI | TTSAA | 6 cut(s) | 214, 485, 652, 674, 836, 1130 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 1211 |
| AjnI | CCWGG | 2 cut(s) | 952, 1257 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1300, 1332 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 808, 840 |
| AluBI | AGCT | 6 cut(s) | 10, 23, 767, 1004, 1091, 1312 |
| AluI | AGCT | 6 cut(s) | 10, 23, 767, 1004, 1091, 1312 |
| Alw26I | GTCTC | 2 cut(s) | 983, 1088 |
| AlwI | GGATC | 1 cut(s) | 337 |
| Ama87I | CYCGRG | 2 cut(s) | 420, 1078 |
| AoxI | GGCC | 4 cut(s) | 37, 265, 378, 1119 |
| ApeKI | GCWGC | 3 cut(s) | 4, 7, 1051 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 305, 337 |
| AsiGI | ACCGGT | 1 cut(s) | 1244 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 883 |
| AspA2I | CCTAGG | 2 cut(s) | 254, 509 |
| AspS9I | GGNCC | 5 cut(s) | 37, 248, 378, 853, 1154 |
| AsuC2I | CCSGG | 2 cut(s) | 934, 1019 |
| AsuHPI | GGTGA | 5 cut(s) | 421, 608, 913, 942, 1268 |
| AsuII | TTCGAA | 1 cut(s) | 1367 |
| AvaI | CYCGRG | 2 cut(s) | 420, 1078 |
| AvaII | GGWCC | 3 cut(s) | 248, 853, 1154 |
| AvrII | CCTAGG | 2 cut(s) | 254, 509 |
| BbsI | GAAGAC | 2 cut(s) | 97, 737 |
| BbvI | GCAGC | 3 cut(s) | 16, 19, 1063 |
| BccI | CCATC | 2 cut(s) | 164, 1154 |
| BciT130I | CCWGG | 2 cut(s) | 954, 1259 |
| BcnI | CCSGG | 2 cut(s) | 934, 1019 |
| BcoDI | GTCTC | 2 cut(s) | 983, 1088 |
| BfaI | CTAG | 8 cut(s) | 20, 96, 255, 510, 558, 828, 900, 1151 |
| BfmI | CTRYAG | 1 cut(s) | 31 |
| BfrI | CTTAAG | 1 cut(s) | 1388 |
| BfuAI | ACCTGC | 1 cut(s) | 885 |
| BglII | AGATCT | 2 cut(s) | 403, 718 |
| BisI | GCNGC | 3 cut(s) | 5, 8, 1052 |
| BlnI | CCTAGG | 2 cut(s) | 254, 509 |
| BlsI | GCNGC | 3 cut(s) | 6, 9, 1053 |
| BmcAI | AGTACT | 1 cut(s) | 291 |
| Bme1390I | CCNGG | 4 cut(s) | 934, 954, 1019, 1259 |
| Bme18I | GGWCC | 3 cut(s) | 248, 853, 1154 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 1211 |
| BmeT110I | CYCGRG | 2 cut(s) | 420, 1078 |
| BmgT120I | GGNCC | 5 cut(s) | 37, 248, 378, 853, 1154 |
| BmiI | GGNNCC | 3 cut(s) | 38, 854, 905 |
| BmrFI | CCNGG | 4 cut(s) | 934, 954, 1019, 1259 |
| BmsI | GCATC | 4 cut(s) | 52, 134, 570, 938 |
| BoxI | GACNNNNGTC | 1 cut(s) | 146 |
| BpiI | GAAGAC | 2 cut(s) | 97, 737 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1061, 1093 |
| Bpu14I | TTCGAA | 1 cut(s) | 1367 |
| BpuMI | CCSGG | 2 cut(s) | 934, 1019 |
| BsaBI | GATNNNNATC | 1 cut(s) | 477 |
| BsaJI | CCNNGG | 6 cut(s) | 120, 254, 509, 953, 1056, 1257 |
| BsaWI | WCCGGW | 1 cut(s) | 1244 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 521, 551, 808, 838 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 593, 913, 939 |
| Bse118I | RCCGGY | 1 cut(s) | 1244 |
| Bse1I | ACTGG | 1 cut(s) | 640 |
| Bse3DI | GCAATG | 1 cut(s) | 944 |
| Bse8I | GATNNNNATC | 1 cut(s) | 477 |
| BseBI | CCWGG | 2 cut(s) | 954, 1259 |
| BseDI | CCNNGG | 6 cut(s) | 120, 254, 509, 953, 1056, 1257 |
| BseGI | GGATG | 4 cut(s) | 202, 585, 929, 1170 |
| BseJI | GATNNNNATC | 1 cut(s) | 477 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 593, 913, 939 |
| BseMI | GCAATG | 1 cut(s) | 944 |
| BseMII | CTCAG | 2 cut(s) | 454, 678 |
| BseNI | ACTGG | 1 cut(s) | 640 |
| BseRI | GAGGAG | 2 cut(s) | 542, 1121 |
| BseXI | GCAGC | 3 cut(s) | 16, 19, 1063 |
| BsgI | GTGCAG | 1 cut(s) | 1242 |
| Bsh1236I | CGCG | 1 cut(s) | 207 |
| BshFI | GGCC | 4 cut(s) | 39, 267, 380, 1121 |
| BshTI | ACCGGT | 1 cut(s) | 1244 |
| BsiHKCI | CYCGRG | 2 cut(s) | 420, 1078 |
| BsiSI | CCGG | 3 cut(s) | 933, 1019, 1245 |
| BslFI | GGGAC | 3 cut(s) | 866, 930, 1153 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 593, 913, 939 |
| BsmAI | GTCTC | 2 cut(s) | 983, 1088 |
| BsmFI | GGGAC | 3 cut(s) | 866, 930, 1153 |
| BsmI | GAATGC | 1 cut(s) | 259 |
| BsnI | GGCC | 4 cut(s) | 39, 267, 380, 1121 |
| BsoBI | CYCGRG | 2 cut(s) | 420, 1078 |
| Bsp119I | TTCGAA | 1 cut(s) | 1367 |
| Bsp143I | GATC | 6 cut(s) | 329, 373, 403, 718, 1321, 1359 |
| Bsp68I | TCGCGA | 1 cut(s) | 207 |
| BspACI | CCGC | 2 cut(s) | 246, 907 |
| BspANI | GGCC | 4 cut(s) | 39, 267, 380, 1121 |
| BspCNI | CTCAG | 2 cut(s) | 453, 679 |
| BspFNI | CGCG | 1 cut(s) | 207 |
| BspLI | GGNNCC | 3 cut(s) | 38, 854, 905 |
| BspMI | ACCTGC | 1 cut(s) | 885 |
| BspPI | GGATC | 1 cut(s) | 337 |
| BspT104I | TTCGAA | 1 cut(s) | 1367 |
| BspTI | CTTAAG | 1 cut(s) | 1388 |
| BsrDI | GCAATG | 1 cut(s) | 944 |
| BsrFI | RCCGGY | 1 cut(s) | 1244 |
| BsrI | ACTGG | 1 cut(s) | 640 |
| BssAI | RCCGGY | 1 cut(s) | 1244 |
| BssECI | CCNNGG | 6 cut(s) | 120, 254, 509, 953, 1056, 1257 |
| BssMI | GATC | 6 cut(s) | 329, 373, 403, 718, 1321, 1359 |
| BssT1I | CCWWGG | 4 cut(s) | 120, 254, 509, 1056 |
| Bst2UI | CCWGG | 2 cut(s) | 954, 1259 |
| Bst4CI | ACNGT | 6 cut(s) | 32, 148, 302, 391, 458, 857 |
| Bst6I | CTCTTC | 1 cut(s) | 1062 |
| BstAFI | CTTAAG | 1 cut(s) | 1388 |
| BstBI | TTCGAA | 1 cut(s) | 1367 |
| BstC8I | GCNNGC | 2 cut(s) | 1049, 1093 |
| BstDEI | CTNAG | 5 cut(s) | 360, 440, 687, 1087, 1325 |
| BstF5I | GGATG | 4 cut(s) | 202, 585, 929, 1170 |
| BstFNI | CGCG | 1 cut(s) | 207 |
| BstKTI | GATC | 6 cut(s) | 332, 376, 406, 721, 1324, 1362 |
| BstMAI | GTCTC | 2 cut(s) | 983, 1088 |
| BstMBI | GATC | 6 cut(s) | 329, 373, 403, 718, 1321, 1359 |
| BstNI | CCWGG | 2 cut(s) | 954, 1259 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 146 |
| BstSCI | CCNGG | 4 cut(s) | 932, 952, 1017, 1257 |
| BstSFI | CTRYAG | 1 cut(s) | 31 |
| BstUI | CGCG | 1 cut(s) | 207 |
| BstV1I | GCAGC | 3 cut(s) | 16, 19, 1063 |
| BstV2I | GAAGAC | 2 cut(s) | 97, 737 |
| BstX2I | RGATCY | 2 cut(s) | 403, 718 |
| BstYI | RGATCY | 2 cut(s) | 403, 718 |
| BsuRI | GGCC | 4 cut(s) | 39, 267, 380, 1121 |
| BtsCI | GGATG | 4 cut(s) | 202, 585, 929, 1170 |
| BtsIMutI | CAGTG | 1 cut(s) | 454 |
| BtuMI | TCGCGA | 1 cut(s) | 207 |
| BveI | ACCTGC | 1 cut(s) | 885 |
| Cac8I | GCNNGC | 2 cut(s) | 1049, 1093 |
| Cfr10I | RCCGGY | 1 cut(s) | 1244 |
| Cfr13I | GGNCC | 5 cut(s) | 37, 248, 378, 853, 1154 |
| Csp6I | GTAC | 2 cut(s) | 290, 392 |
| CspAI | ACCGGT | 1 cut(s) | 1244 |
| CviAII | CATG | 4 cut(s) | 230, 545, 604, 1208 |
| CviQI | GTAC | 2 cut(s) | 290, 392 |
| DdeI | CTNAG | 5 cut(s) | 360, 440, 687, 1087, 1325 |
| DpnI | GATC | 6 cut(s) | 331, 375, 405, 720, 1323, 1361 |
| DpnII | GATC | 6 cut(s) | 329, 373, 403, 718, 1321, 1359 |
| DriI | GACNNNNNGTC | 1 cut(s) | 1211 |
| Eam1104I | CTCTTC | 1 cut(s) | 1062 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 1211 |
| EarI | CTCTTC | 1 cut(s) | 1062 |
| Eco130I | CCWWGG | 4 cut(s) | 120, 254, 509, 1056 |
| Eco147I | AGGCCT | 1 cut(s) | 1121 |
| Eco47I | GGWCC | 3 cut(s) | 248, 853, 1154 |
| Eco57I | CTGAAG | 2 cut(s) | 863, 1086 |
| Eco88I | CYCGRG | 2 cut(s) | 420, 1078 |
| EcoO109I | RGGNCCY | 2 cut(s) | 37, 1154 |
| EcoRII | CCWGG | 2 cut(s) | 952, 1257 |
| EcoT14I | CCWWGG | 4 cut(s) | 120, 254, 509, 1056 |
| EcoT22I | ATGCAT | 1 cut(s) | 931 |
| ErhI | CCWWGG | 4 cut(s) | 120, 254, 509, 1056 |
| FaeI | CATG | 4 cut(s) | 233, 548, 607, 1211 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 51, 83 |
| FaqI | GGGAC | 3 cut(s) | 866, 930, 1153 |
| FatI | CATG | 4 cut(s) | 229, 544, 603, 1207 |
| Fnu4HI | GCNGC | 3 cut(s) | 5, 8, 1052 |
| FokI | GGATG | 4 cut(s) | 209, 592, 916, 1177 |
| Fsp4HI | GCNGC | 3 cut(s) | 5, 8, 1052 |
| FspBI | CTAG | 8 cut(s) | 20, 96, 255, 510, 558, 828, 900, 1151 |
| GluI | GCNGC | 3 cut(s) | 5, 8, 1052 |
| HaeIII | GGCC | 4 cut(s) | 39, 267, 380, 1121 |
| HapII | CCGG | 3 cut(s) | 933, 1019, 1245 |
| Hin1II | CATG | 4 cut(s) | 233, 548, 607, 1211 |
| HincII | GTYRAC | 2 cut(s) | 141, 313 |
| HindII | GTYRAC | 2 cut(s) | 141, 313 |
| HindIII | AAGCTT | 1 cut(s) | 1310 |
| HinfI | GANTC | 8 cut(s) | 478, 599, 700, 745, 832, 918, 1081, 1262 |
| HpaII | CCGG | 3 cut(s) | 933, 1019, 1245 |
| HphI | GGTGA | 5 cut(s) | 421, 608, 913, 942, 1268 |
| Hpy166II | GTNNAC | 3 cut(s) | 141, 298, 313 |
| Hpy188I | TCNGA | 7 cut(s) | 115, 621, 1001, 1015, 1066, 1102, 1321 |
| Hpy188III | TCNNGA | 8 cut(s) | 131, 206, 420, 466, 482, 558, 649, 1157 |
| Hpy8I | GTNNAC | 3 cut(s) | 141, 298, 313 |
| HpyAV | CCTTC | 7 cut(s) | 184, 443, 838, 873, 877, 1326, 1363 |
| HpyCH4III | ACNGT | 6 cut(s) | 32, 148, 302, 391, 458, 857 |
| HpyCH4IV | ACGT | 3 cut(s) | 809, 823, 1347 |
| HpyCH4V | TGCA | 7 cut(s) | 4, 185, 894, 929, 1051, 1135, 1223 |
| HpyF3I | CTNAG | 5 cut(s) | 360, 440, 687, 1087, 1325 |
| HpySE526I | ACGT | 3 cut(s) | 809, 823, 1347 |
| Hsp92II | CATG | 4 cut(s) | 233, 548, 607, 1211 |
| Kzo9I | GATC | 6 cut(s) | 329, 373, 403, 718, 1321, 1359 |
| Lsp1109I | GCAGC | 3 cut(s) | 16, 19, 1063 |
| LweI | GCATC | 4 cut(s) | 52, 134, 570, 938 |
| MaeI | CTAG | 8 cut(s) | 20, 96, 255, 510, 558, 828, 900, 1151 |
| MaeII | ACGT | 3 cut(s) | 809, 823, 1347 |
| MaeIII | GTNAC | 4 cut(s) | 606, 746, 1270, 1343 |
| MalI | GATC | 6 cut(s) | 331, 375, 405, 720, 1323, 1361 |
| MboI | GATC | 6 cut(s) | 329, 373, 403, 718, 1321, 1359 |
| MboII | GAAGA | 6 cut(s) | 97, 728, 739, 742, 939, 1079 |
| MfeI | CAATTG | 1 cut(s) | 1332 |
| MflI | RGATCY | 2 cut(s) | 403, 718 |
| MluCI | AATT | 2 cut(s) | 788, 1332 |
| MlyI | GAGTC | 4 cut(s) | 608, 754, 912, 1090 |
| MmeI | TCCRAC | 5 cut(s) | 175, 557, 599, 611, 693 |
| MnlI | CCTC | 9 cut(s) | 187, 261, 360, 447, 520, 810, 841, 1099, 1150 |
| Mph1103I | ATGCAT | 1 cut(s) | 931 |
| MroXI | GAANNNNTTC | 1 cut(s) | 883 |
| MseI | TTAA | 5 cut(s) | 567, 1029, 1227, 1299, 1389 |
| MslI | CAYNNNNRTG | 2 cut(s) | 753, 984 |
| MspCI | CTTAAG | 1 cut(s) | 1388 |
| MspI | CCGG | 3 cut(s) | 933, 1019, 1245 |
| MspR9I | CCNGG | 4 cut(s) | 934, 954, 1019, 1259 |
| MunI | CAATTG | 1 cut(s) | 1332 |
| Mva1269I | GAATGC | 1 cut(s) | 259 |
| MvaI | CCWGG | 2 cut(s) | 954, 1259 |
| MvnI | CGCG | 1 cut(s) | 207 |
| NciI | CCSGG | 2 cut(s) | 934, 1019 |
| NdeII | GATC | 6 cut(s) | 329, 373, 403, 718, 1321, 1359 |
| NlaIII | CATG | 4 cut(s) | 233, 548, 607, 1211 |
| NlaIV | GGNNCC | 3 cut(s) | 38, 854, 905 |
| NmeAIII | GCCGAG | 1 cut(s) | 768 |
| NmuCI | GTSAC | 1 cut(s) | 746 |
| NruI | TCGCGA | 1 cut(s) | 207 |
| NsiI | ATGCAT | 1 cut(s) | 931 |
| NspV | TTCGAA | 1 cut(s) | 1367 |
| PaeR7I | CTCGAG | 2 cut(s) | 420, 1078 |
| PceI | AGGCCT | 1 cut(s) | 1121 |
| PctI | GAATGC | 1 cut(s) | 259 |
| PdmI | GAANNNNTTC | 1 cut(s) | 883 |
| PfeI | GAWTC | 4 cut(s) | 478, 700, 832, 1262 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 593 |
| PinAI | ACCGGT | 1 cut(s) | 1244 |
| PkrI | GCNGC | 3 cut(s) | 6, 9, 1053 |
| PleI | GAGTC | 4 cut(s) | 607, 753, 912, 1089 |
| PpsI | GAGTC | 4 cut(s) | 607, 753, 912, 1089 |
| PpuMI | RGGWCCY | 1 cut(s) | 1154 |
| PshAI | GACNNNNGTC | 1 cut(s) | 146 |
| Psp1406I | AACGTT | 1 cut(s) | 823 |
| Psp5II | RGGWCCY | 1 cut(s) | 1154 |
| Psp6I | CCWGG | 2 cut(s) | 952, 1257 |
| PspGI | CCWGG | 2 cut(s) | 952, 1257 |
| PspN4I | GGNNCC | 3 cut(s) | 38, 854, 905 |
| PspPI | GGNCC | 5 cut(s) | 37, 248, 378, 853, 1154 |
| PspPPI | RGGWCCY | 1 cut(s) | 1154 |
| PspXI | VCTCGAGB | 1 cut(s) | 1078 |
| PsuI | RGATCY | 2 cut(s) | 403, 718 |
| RruI | TCGCGA | 1 cut(s) | 207 |
| RsaI | GTAC | 2 cut(s) | 291, 393 |
| RsaNI | GTAC | 2 cut(s) | 290, 392 |
| RseI | CAYNNNNRTG | 2 cut(s) | 753, 984 |
| SaqAI | TTAA | 5 cut(s) | 567, 1029, 1227, 1299, 1389 |
| SatI | GCNGC | 3 cut(s) | 5, 8, 1052 |
| Sau3AI | GATC | 6 cut(s) | 329, 373, 403, 718, 1321, 1359 |
| Sau96I | GGNCC | 5 cut(s) | 37, 248, 378, 853, 1154 |
| ScaI | AGTACT | 1 cut(s) | 291 |
| SchI | GAGTC | 4 cut(s) | 608, 754, 912, 1090 |
| ScrFI | CCNGG | 4 cut(s) | 934, 954, 1019, 1259 |
| SfaNI | GCATC | 4 cut(s) | 52, 134, 570, 938 |
| SfcI | CTRYAG | 1 cut(s) | 31 |
| Sfr274I | CTCGAG | 2 cut(s) | 420, 1078 |
| SfuI | TTCGAA | 1 cut(s) | 1367 |
| SinI | GGWCC | 3 cut(s) | 248, 853, 1154 |
| SlaI | CTCGAG | 2 cut(s) | 420, 1078 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 753, 984 |
| SmlI | CTYRAG | 3 cut(s) | 420, 1078, 1388 |
| SmoI | CTYRAG | 3 cut(s) | 420, 1078, 1388 |
| Sse9I | AATT | 2 cut(s) | 788, 1332 |
| SseBI | AGGCCT | 1 cut(s) | 1121 |
| SsiI | CCGC | 2 cut(s) | 246, 907 |
| SspI | AATATT | 1 cut(s) | 279 |
| SspMI | CTAG | 8 cut(s) | 20, 96, 255, 510, 558, 828, 900, 1151 |
| StuI | AGGCCT | 1 cut(s) | 1121 |
| StyD4I | CCNGG | 4 cut(s) | 932, 952, 1017, 1257 |
| StyI | CCWWGG | 4 cut(s) | 120, 254, 509, 1056 |
| TaaI | ACNGT | 6 cut(s) | 32, 148, 302, 391, 458, 857 |
| TaiI | ACGT | 3 cut(s) | 812, 826, 1350 |
| TaqI | TCGA | 6 cut(s) | 82, 421, 778, 877, 1079, 1367 |
| TasI | AATT | 2 cut(s) | 788, 1332 |
| TatI | WGTACW | 2 cut(s) | 289, 391 |
| TfiI | GAWTC | 4 cut(s) | 478, 700, 832, 1262 |
| Tru1I | TTAA | 5 cut(s) | 567, 1029, 1227, 1299, 1389 |
| Tru9I | TTAA | 5 cut(s) | 567, 1029, 1227, 1299, 1389 |
| TscAI | CASTG | 1 cut(s) | 461 |
| TseFI | GTSAC | 1 cut(s) | 746 |
| TseI | GCWGC | 3 cut(s) | 4, 7, 1051 |
| Tsp45I | GTSAC | 1 cut(s) | 746 |
| TspDTI | ATGAA | 8 cut(s) | 740, 771, 801, 819, 863, 876, 968, 1088 |
| TspRI | CASTG | 1 cut(s) | 461 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 593 |
| Vha464I | CTTAAG | 1 cut(s) | 1388 |
| VpaK11BI | GGWCC | 3 cut(s) | 248, 853, 1154 |
| XbaI | TCTAGA | 1 cut(s) | 557 |
| XhoI | CTCGAG | 2 cut(s) | 420, 1078 |
| XmaJI | CCTAGG | 2 cut(s) | 254, 509 |
| XmnI | GAANNNNTTC | 1 cut(s) | 883 |
| XspI | CTAG | 8 cut(s) | 20, 96, 255, 510, 558, 828, 900, 1151 |
| ZrmI | AGTACT | 1 cut(s) | 291 |
| Zsp2I | ATGCAT | 1 cut(s) | 931 |