ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc65I | GGTACC | 1 cut(s) | 54 |
| AccB1I | GGYRCC | 1 cut(s) | 54 |
| AciI | CCGC | 3 cut(s) | 16, 74, 105 |
| AclWI | GGATC | 1 cut(s) | 442 |
| AcoI | YGGCCR | 1 cut(s) | 515 |
| AfaI | GTAC | 2 cut(s) | 56, 147 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 120 |
| AgsI | TTSAA | 2 cut(s) | 577, 629 |
| AjnI | CCWGG | 1 cut(s) | 57 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 116, 148 |
| AluBI | AGCT | 3 cut(s) | 164, 325, 660 |
| AluI | AGCT | 3 cut(s) | 164, 325, 660 |
| Alw26I | GTCTC | 1 cut(s) | 306 |
| AlwI | GGATC | 1 cut(s) | 442 |
| AoxI | GGCC | 2 cut(s) | 106, 515 |
| Asp718I | GGTACC | 1 cut(s) | 54 |
| AspS9I | GGNCC | 1 cut(s) | 293 |
| AsuHPI | GGTGA | 1 cut(s) | 551 |
| AsuII | TTCGAA | 1 cut(s) | 633 |
| AvaII | GGWCC | 1 cut(s) | 293 |
| AxyI | CCTNAGG | 1 cut(s) | 266 |
| BaeGI | GKGCMC | 1 cut(s) | 462 |
| BalI | TGGCCA | 1 cut(s) | 517 |
| BanI | GGYRCC | 1 cut(s) | 54 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 38, 70 |
| BauI | CACGAG | 1 cut(s) | 527 |
| BccI | CCATC | 2 cut(s) | 398, 578 |
| BciT130I | CCWGG | 1 cut(s) | 59 |
| BclI | TGATCA | 1 cut(s) | 556 |
| BcoDI | GTCTC | 1 cut(s) | 306 |
| BfaI | CTAG | 1 cut(s) | 110 |
| BisI | GCNGC | 1 cut(s) | 106 |
| BlsI | GCNGC | 1 cut(s) | 107 |
| BmcAI | AGTACT | 1 cut(s) | 147 |
| Bme1390I | CCNGG | 1 cut(s) | 59 |
| Bme18I | GGWCC | 1 cut(s) | 293 |
| BmgT120I | GGNCC | 1 cut(s) | 293 |
| BmiI | GGNNCC | 4 cut(s) | 24, 56, 154, 550 |
| BmrFI | CCNGG | 1 cut(s) | 59 |
| BmrI | ACTGGG | 1 cut(s) | 158 |
| BmsI | GCATC | 2 cut(s) | 366, 532 |
| BmuI | ACTGGG | 1 cut(s) | 158 |
| BpmI | CTGGAG | 1 cut(s) | 437 |
| Bpu14I | TTCGAA | 1 cut(s) | 633 |
| BsaJI | CCNNGG | 1 cut(s) | 296 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 23, 53, 410, 440 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 120 |
| Bse1I | ACTGG | 2 cut(s) | 153, 420 |
| Bse21I | CCTNAGG | 1 cut(s) | 266 |
| BseBI | CCWGG | 1 cut(s) | 59 |
| BseDI | CCNNGG | 1 cut(s) | 296 |
| BseGI | GGATG | 2 cut(s) | 142, 409 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 120 |
| BseNI | ACTGG | 2 cut(s) | 153, 420 |
| BseRI | GAGGAG | 2 cut(s) | 363, 622 |
| BseSI | GKGCMC | 1 cut(s) | 462 |
| BsgI | GTGCAG | 1 cut(s) | 392 |
| BshFI | GGCC | 2 cut(s) | 108, 517 |
| BshNI | GGYRCC | 1 cut(s) | 54 |
| BsiSI | CCGG | 1 cut(s) | 546 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 120 |
| BsmAI | GTCTC | 1 cut(s) | 306 |
| BsnI | GGCC | 2 cut(s) | 108, 517 |
| Bsp119I | TTCGAA | 1 cut(s) | 633 |
| Bsp1286I | GDGCHC | 1 cut(s) | 462 |
| Bsp143I | GATC | 2 cut(s) | 434, 556 |
| BspACI | CCGC | 3 cut(s) | 16, 74, 105 |
| BspANI | GGCC | 2 cut(s) | 108, 517 |
| BspLI | GGNNCC | 4 cut(s) | 24, 56, 154, 550 |
| BspPI | GGATC | 1 cut(s) | 442 |
| BspT104I | TTCGAA | 1 cut(s) | 633 |
| BspT107I | GGYRCC | 1 cut(s) | 54 |
| BsrI | ACTGG | 2 cut(s) | 153, 420 |
| BssECI | CCNNGG | 1 cut(s) | 296 |
| BssMI | GATC | 2 cut(s) | 434, 556 |
| BssSI | CACGAG | 1 cut(s) | 527 |
| BssT1I | CCWWGG | 1 cut(s) | 296 |
| Bst2BI | CACGAG | 1 cut(s) | 527 |
| Bst2UI | CCWGG | 1 cut(s) | 59 |
| Bst6I | CTCTTC | 1 cut(s) | 648 |
| BstBI | TTCGAA | 1 cut(s) | 633 |
| BstDEI | CTNAG | 2 cut(s) | 188, 266 |
| BstF5I | GGATG | 2 cut(s) | 142, 409 |
| BstKTI | GATC | 2 cut(s) | 437, 559 |
| BstMAI | GTCTC | 1 cut(s) | 306 |
| BstMBI | GATC | 2 cut(s) | 434, 556 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 80 |
| BstNI | CCWGG | 1 cut(s) | 59 |
| BstSCI | CCNGG | 1 cut(s) | 57 |
| BstSLI | GKGCMC | 1 cut(s) | 462 |
| Bsu36I | CCTNAGG | 1 cut(s) | 266 |
| BsuRI | GGCC | 2 cut(s) | 108, 517 |
| BtsCI | GGATG | 2 cut(s) | 142, 409 |
| Cfr13I | GGNCC | 1 cut(s) | 293 |
| Csp6I | GTAC | 2 cut(s) | 55, 146 |
| CviAII | CATG | 1 cut(s) | 536 |
| CviJI | RGCY | 8 cut(s) | 108, 113, 164, 325, 486, 517, 551, 660 |
| CviKI_1 | RGCY | 8 cut(s) | 108, 113, 164, 325, 486, 517, 551, 660 |
| CviQI | GTAC | 2 cut(s) | 55, 146 |
| DdeI | CTNAG | 2 cut(s) | 188, 266 |
| DpnI | GATC | 2 cut(s) | 436, 558 |
| DpnII | GATC | 2 cut(s) | 434, 556 |
| EaeI | YGGCCR | 1 cut(s) | 515 |
| Eam1104I | CTCTTC | 1 cut(s) | 648 |
| EarI | CTCTTC | 1 cut(s) | 648 |
| Eco130I | CCWWGG | 1 cut(s) | 296 |
| Eco47I | GGWCC | 1 cut(s) | 293 |
| Eco81I | CCTNAGG | 1 cut(s) | 266 |
| EcoRII | CCWGG | 1 cut(s) | 57 |
| EcoT14I | CCWWGG | 1 cut(s) | 296 |
| EcoT22I | ATGCAT | 1 cut(s) | 381 |
| ErhI | CCWWGG | 1 cut(s) | 296 |
| FaeI | CATG | 1 cut(s) | 539 |
| FaiI | YATR | 8 cut(s) | 29, 66, 222, 335, 381, 425, 537, 643 |
| FatI | CATG | 1 cut(s) | 535 |
| FauI | CCCGC | 1 cut(s) | 67 |
| FbaI | TGATCA | 1 cut(s) | 556 |
| Fnu4HI | GCNGC | 1 cut(s) | 106 |
| FokI | GGATG | 2 cut(s) | 149, 416 |
| Fsp4HI | GCNGC | 1 cut(s) | 106 |
| FspBI | CTAG | 1 cut(s) | 110 |
| GluI | GCNGC | 1 cut(s) | 106 |
| GsuI | CTGGAG | 1 cut(s) | 437 |
| HaeIII | GGCC | 2 cut(s) | 108, 517 |
| HapII | CCGG | 1 cut(s) | 546 |
| Hin1II | CATG | 1 cut(s) | 539 |
| HpaII | CCGG | 1 cut(s) | 546 |
| HphI | GGTGA | 1 cut(s) | 551 |
| Hpy166II | GTNNAC | 2 cut(s) | 413, 444 |
| Hpy188I | TCNGA | 2 cut(s) | 311, 556 |
| Hpy188III | TCNNGA | 4 cut(s) | 230, 432, 527, 577 |
| Hpy8I | GTNNAC | 2 cut(s) | 413, 444 |
| HpyAV | CCTTC | 3 cut(s) | 13, 86, 118 |
| HpyCH4V | TGCA | 2 cut(s) | 373, 379 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 80 |
| HpyF3I | CTNAG | 2 cut(s) | 188, 266 |
| Hsp92II | CATG | 1 cut(s) | 539 |
| KpnI | GGTACC | 1 cut(s) | 58 |
| Ksp22I | TGATCA | 1 cut(s) | 556 |
| Kzo9I | GATC | 2 cut(s) | 434, 556 |
| LmnI | GCTCC | 1 cut(s) | 548 |
| LweI | GCATC | 2 cut(s) | 366, 532 |
| MaeI | CTAG | 1 cut(s) | 110 |
| MalI | GATC | 2 cut(s) | 436, 558 |
| MboI | GATC | 2 cut(s) | 434, 556 |
| MboII | GAAGA | 3 cut(s) | 243, 350, 665 |
| MfeI | CAATTG | 1 cut(s) | 396 |
| MhlI | GDGCHC | 1 cut(s) | 462 |
| MlsI | TGGCCA | 1 cut(s) | 517 |
| MluCI | AATT | 3 cut(s) | 273, 396, 629 |
| MluNI | TGGCCA | 1 cut(s) | 517 |
| MmeI | TCCRAC | 2 cut(s) | 101, 114 |
| Mox20I | TGGCCA | 1 cut(s) | 517 |
| Mph1103I | ATGCAT | 1 cut(s) | 381 |
| MscI | TGGCCA | 1 cut(s) | 517 |
| MseI | TTAA | 3 cut(s) | 318, 488, 648 |
| MslI | CAYNNNNRTG | 2 cut(s) | 171, 540 |
| Msp20I | TGGCCA | 1 cut(s) | 517 |
| MspI | CCGG | 1 cut(s) | 546 |
| MspR9I | CCNGG | 1 cut(s) | 59 |
| MunI | CAATTG | 1 cut(s) | 396 |
| MvaI | CCWGG | 1 cut(s) | 59 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 80 |
| NdeII | GATC | 2 cut(s) | 434, 556 |
| NlaIII | CATG | 1 cut(s) | 539 |
| NlaIV | GGNNCC | 4 cut(s) | 24, 56, 154, 550 |
| NsiI | ATGCAT | 1 cut(s) | 381 |
| NspV | TTCGAA | 1 cut(s) | 633 |
| PkrI | GCNGC | 1 cut(s) | 107 |
| Psp6I | CCWGG | 1 cut(s) | 57 |
| PspGI | CCWGG | 1 cut(s) | 57 |
| PspN4I | GGNNCC | 4 cut(s) | 24, 56, 154, 550 |
| PspPI | GGNCC | 1 cut(s) | 293 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 168, 200 |
| RsaI | GTAC | 2 cut(s) | 56, 147 |
| RsaNI | GTAC | 2 cut(s) | 55, 146 |
| RseI | CAYNNNNRTG | 2 cut(s) | 171, 540 |
| SaqAI | TTAA | 3 cut(s) | 318, 488, 648 |
| SatI | GCNGC | 1 cut(s) | 106 |
| Sau3AI | GATC | 2 cut(s) | 434, 556 |
| Sau96I | GGNCC | 1 cut(s) | 293 |
| ScaI | AGTACT | 1 cut(s) | 147 |
| ScrFI | CCNGG | 1 cut(s) | 59 |
| SduI | GDGCHC | 1 cut(s) | 462 |
| SfaNI | GCATC | 2 cut(s) | 366, 532 |
| SfuI | TTCGAA | 1 cut(s) | 633 |
| SinI | GGWCC | 1 cut(s) | 293 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 171, 540 |
| Sse9I | AATT | 3 cut(s) | 273, 396, 629 |
| SsiI | CCGC | 3 cut(s) | 16, 74, 105 |
| SspI | AATATT | 1 cut(s) | 523 |
| SspMI | CTAG | 1 cut(s) | 110 |
| StyD4I | CCNGG | 1 cut(s) | 57 |
| StyI | CCWWGG | 1 cut(s) | 296 |
| TaqI | TCGA | 1 cut(s) | 633 |
| TasI | AATT | 3 cut(s) | 273, 396, 629 |
| TatI | WGTACW | 1 cut(s) | 145 |
| TauI | GCSGC | 1 cut(s) | 108 |
| Tru1I | TTAA | 3 cut(s) | 318, 488, 648 |
| Tru9I | TTAA | 3 cut(s) | 318, 488, 648 |
| TspDTI | ATGAA | 1 cut(s) | 524 |
| VpaK11BI | GGWCC | 1 cut(s) | 293 |
| XspI | CTAG | 1 cut(s) | 110 |
| ZrmI | AGTACT | 1 cut(s) | 147 |
| Zsp2I | ATGCAT | 1 cut(s) | 381 |