ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 2 cut(s) | 831, 938 |
| Acc36I | ACCTGC | 1 cut(s) | 353 |
| AccB1I | GGYRCC | 1 cut(s) | 795 |
| AccI | GTMKAC | 1 cut(s) | 918 |
| AccII | CGCG | 3 cut(s) | 878, 1046, 1077 |
| AciI | CCGC | 3 cut(s) | 870, 878, 961 |
| AclWI | GGATC | 3 cut(s) | 168, 271, 795 |
| AcuI | CTGAAG | 1 cut(s) | 1038 |
| AcyI | GRCGYC | 2 cut(s) | 828, 935 |
| AfaI | GTAC | 2 cut(s) | 47, 617 |
| AfeI | AGCGCT | 1 cut(s) | 457 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 889 |
| AflIII | ACRYGT | 2 cut(s) | 1044, 1075 |
| AgsI | TTSAA | 5 cut(s) | 239, 356, 485, 599, 686 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 934 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 530, 562 |
| AluBI | AGCT | 3 cut(s) | 153, 590, 718 |
| AluI | AGCT | 3 cut(s) | 153, 590, 718 |
| Alw26I | GTCTC | 2 cut(s) | 70, 185 |
| AlwI | GGATC | 3 cut(s) | 168, 271, 795 |
| Aor51HI | AGCGCT | 1 cut(s) | 457 |
| AoxI | GGCC | 3 cut(s) | 112, 775, 894 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 845 |
| AspA2I | CCTAGG | 1 cut(s) | 689 |
| AspLEI | GCGC | 3 cut(s) | 336, 423, 458 |
| AspS9I | GGNCC | 3 cut(s) | 664, 775, 880 |
| AsuHPI | GGTGA | 3 cut(s) | 262, 286, 658 |
| AsuII | TTCGAA | 2 cut(s) | 634, 976 |
| AvaII | GGWCC | 2 cut(s) | 664, 880 |
| AvrII | CCTAGG | 1 cut(s) | 689 |
| BanI | GGYRCC | 1 cut(s) | 795 |
| BccI | CCATC | 1 cut(s) | 282 |
| BceAI | ACGGC | 2 cut(s) | 322, 881 |
| BclI | TGATCA | 1 cut(s) | 460 |
| BcoDI | GTCTC | 2 cut(s) | 70, 185 |
| BfaI | CTAG | 4 cut(s) | 80, 690, 722, 884 |
| BfoI | RGCGCY | 1 cut(s) | 459 |
| BfuAI | ACCTGC | 1 cut(s) | 353 |
| BlnI | CCTAGG | 1 cut(s) | 689 |
| BmcAI | AGTACT | 1 cut(s) | 617 |
| Bme18I | GGWCC | 2 cut(s) | 664, 880 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 934 |
| BmgT120I | GGNCC | 3 cut(s) | 664, 775, 880 |
| BmiI | GGNNCC | 3 cut(s) | 776, 797, 856 |
| BmsI | GCATC | 1 cut(s) | 527 |
| BpmI | CTGGAG | 1 cut(s) | 783 |
| Bpu14I | TTCGAA | 2 cut(s) | 634, 976 |
| BsaHI | GRCGYC | 2 cut(s) | 828, 935 |
| BsaJI | CCNNGG | 1 cut(s) | 689 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 1020, 1050 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 889 |
| Bse1I | ACTGG | 2 cut(s) | 766, 935 |
| BseDI | CCNNGG | 1 cut(s) | 689 |
| BseGI | GGATG | 3 cut(s) | 293, 518, 786 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 889 |
| BseMII | CTCAG | 2 cut(s) | 630, 1072 |
| BseNI | ACTGG | 2 cut(s) | 766, 935 |
| BseRI | GAGGAG | 5 cut(s) | 926, 1004, 1007, 1010, 1013 |
| BseYI | CCCAGC | 1 cut(s) | 149 |
| Bsh1236I | CGCG | 3 cut(s) | 878, 1046, 1077 |
| BshFI | GGCC | 3 cut(s) | 114, 777, 896 |
| BshNI | GGYRCC | 1 cut(s) | 795 |
| BsiSI | CCGG | 1 cut(s) | 778 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 889 |
| BsmAI | GTCTC | 2 cut(s) | 70, 185 |
| BsnI | GGCC | 3 cut(s) | 114, 777, 896 |
| Bsp119I | TTCGAA | 2 cut(s) | 634, 976 |
| Bsp143I | GATC | 7 cut(s) | 82, 160, 276, 460, 744, 800, 906 |
| BspACI | CCGC | 3 cut(s) | 870, 878, 961 |
| BspANI | GGCC | 3 cut(s) | 114, 777, 896 |
| BspCNI | CTCAG | 2 cut(s) | 631, 1071 |
| BspFNI | CGCG | 3 cut(s) | 878, 1046, 1077 |
| BspLI | GGNNCC | 3 cut(s) | 776, 797, 856 |
| BspMI | ACCTGC | 1 cut(s) | 353 |
| BspPI | GGATC | 3 cut(s) | 168, 271, 795 |
| BspQI | GCTCTTC | 2 cut(s) | 508, 947 |
| BspT104I | TTCGAA | 2 cut(s) | 634, 976 |
| BspT107I | GGYRCC | 1 cut(s) | 795 |
| BsrI | ACTGG | 2 cut(s) | 766, 935 |
| BssECI | CCNNGG | 1 cut(s) | 689 |
| BssMI | GATC | 7 cut(s) | 82, 160, 276, 460, 744, 800, 906 |
| BssNI | GRCGYC | 2 cut(s) | 828, 935 |
| BssT1I | CCWWGG | 1 cut(s) | 689 |
| Bst4CI | ACNGT | 2 cut(s) | 243, 682 |
| Bst6I | CTCTTC | 5 cut(s) | 122, 508, 735, 947, 959 |
| BstACI | GRCGYC | 2 cut(s) | 828, 935 |
| BstBI | TTCGAA | 2 cut(s) | 634, 976 |
| BstC8I | GCNNGC | 1 cut(s) | 592 |
| BstDEI | CTNAG | 4 cut(s) | 424, 437, 639, 1058 |
| BstF5I | GGATG | 3 cut(s) | 293, 518, 786 |
| BstFNI | CGCG | 3 cut(s) | 878, 1046, 1077 |
| BstH2I | RGCGCY | 1 cut(s) | 459 |
| BstHHI | GCGC | 3 cut(s) | 336, 423, 458 |
| BstKTI | GATC | 7 cut(s) | 85, 163, 279, 463, 747, 803, 909 |
| BstMAI | GTCTC | 2 cut(s) | 70, 185 |
| BstMBI | GATC | 7 cut(s) | 82, 160, 276, 460, 744, 800, 906 |
| BstUI | CGCG | 3 cut(s) | 878, 1046, 1077 |
| BsuRI | GGCC | 3 cut(s) | 114, 777, 896 |
| BtsCI | GGATG | 3 cut(s) | 293, 518, 786 |
| BveI | ACCTGC | 1 cut(s) | 353 |
| Cac8I | GCNNGC | 1 cut(s) | 592 |
| CfoI | GCGC | 3 cut(s) | 336, 423, 458 |
| Cfr13I | GGNCC | 3 cut(s) | 664, 775, 880 |
| CseI | GACGC | 2 cut(s) | 569, 1052 |
| Csp6I | GTAC | 2 cut(s) | 46, 616 |
| CviAII | CATG | 4 cut(s) | 25, 385, 464, 706 |
| CviQI | GTAC | 2 cut(s) | 46, 616 |
| DdeI | CTNAG | 4 cut(s) | 424, 437, 639, 1058 |
| DpnI | GATC | 7 cut(s) | 84, 162, 278, 462, 746, 802, 908 |
| DpnII | GATC | 7 cut(s) | 82, 160, 276, 460, 744, 800, 906 |
| DriI | GACNNNNNGTC | 1 cut(s) | 934 |
| Eam1104I | CTCTTC | 5 cut(s) | 122, 508, 735, 947, 959 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 934 |
| EarI | CTCTTC | 5 cut(s) | 122, 508, 735, 947, 959 |
| Eco130I | CCWWGG | 1 cut(s) | 689 |
| Eco147I | AGGCCT | 1 cut(s) | 114 |
| Eco47I | GGWCC | 2 cut(s) | 664, 880 |
| Eco47III | AGCGCT | 1 cut(s) | 457 |
| Eco57I | CTGAAG | 1 cut(s) | 1038 |
| EcoT14I | CCWWGG | 1 cut(s) | 689 |
| ErhI | CCWWGG | 1 cut(s) | 689 |
| FaeI | CATG | 4 cut(s) | 28, 388, 467, 709 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 212, 244 |
| FatI | CATG | 4 cut(s) | 24, 384, 463, 705 |
| FbaI | TGATCA | 1 cut(s) | 460 |
| FblI | GTMKAC | 1 cut(s) | 918 |
| FokI | GGATG | 3 cut(s) | 300, 505, 793 |
| FspBI | CTAG | 4 cut(s) | 80, 690, 722, 884 |
| GlaI | GCGC | 3 cut(s) | 335, 422, 457 |
| GsaI | CCCAGC | 1 cut(s) | 153 |
| GsuI | CTGGAG | 1 cut(s) | 783 |
| HaeII | RGCGCY | 1 cut(s) | 459 |
| HaeIII | GGCC | 3 cut(s) | 114, 777, 896 |
| HapII | CCGG | 1 cut(s) | 778 |
| HgaI | GACGC | 2 cut(s) | 569, 1052 |
| HhaI | GCGC | 3 cut(s) | 336, 423, 458 |
| Hin1I | GRCGYC | 2 cut(s) | 828, 935 |
| Hin1II | CATG | 4 cut(s) | 28, 388, 467, 709 |
| Hin6I | GCGC | 3 cut(s) | 334, 421, 456 |
| HinP1I | GCGC | 3 cut(s) | 334, 421, 456 |
| HincII | GTYRAC | 1 cut(s) | 22 |
| HindII | GTYRAC | 1 cut(s) | 22 |
| HindIII | AAGCTT | 1 cut(s) | 716 |
| HinfI | GANTC | 5 cut(s) | 39, 269, 543, 813, 973 |
| HpaII | CCGG | 1 cut(s) | 778 |
| HphI | GGTGA | 3 cut(s) | 262, 286, 658 |
| Hpy166II | GTNNAC | 6 cut(s) | 22, 48, 304, 443, 649, 919 |
| Hpy188I | TCNGA | 6 cut(s) | 58, 160, 736, 812, 854, 1061 |
| Hpy188III | TCNNGA | 3 cut(s) | 722, 748, 904 |
| Hpy8I | GTNNAC | 6 cut(s) | 22, 48, 304, 443, 649, 919 |
| Hpy99I | CGWCG | 3 cut(s) | 833, 854, 940 |
| HpyAV | CCTTC | 6 cut(s) | 210, 491, 1001, 1013, 1019, 1064 |
| HpyCH4III | ACNGT | 2 cut(s) | 243, 682 |
| HpyCH4IV | ACGT | 3 cut(s) | 283, 828, 935 |
| HpyCH4V | TGCA | 3 cut(s) | 130, 319, 788 |
| HpyF3I | CTNAG | 4 cut(s) | 424, 437, 639, 1058 |
| HpySE526I | ACGT | 3 cut(s) | 283, 828, 935 |
| Hsp92I | GRCGYC | 2 cut(s) | 828, 935 |
| Hsp92II | CATG | 4 cut(s) | 28, 388, 467, 709 |
| HspAI | GCGC | 3 cut(s) | 334, 421, 456 |
| Ksp22I | TGATCA | 1 cut(s) | 460 |
| Kzo9I | GATC | 7 cut(s) | 82, 160, 276, 460, 744, 800, 906 |
| LguI | GCTCTTC | 2 cut(s) | 508, 947 |
| LmnI | GCTCC | 2 cut(s) | 764, 854 |
| LpnPI | CCDG | 8 cut(s) | 163, 232, 333, 348, 576, 747, 791, 916 |
| LweI | GCATC | 1 cut(s) | 527 |
| MaeI | CTAG | 4 cut(s) | 80, 690, 722, 884 |
| MaeII | ACGT | 3 cut(s) | 283, 828, 935 |
| MaeIII | GTNAC | 1 cut(s) | 250 |
| MalI | GATC | 7 cut(s) | 84, 162, 278, 462, 746, 802, 908 |
| MboI | GATC | 7 cut(s) | 82, 160, 276, 460, 744, 800, 906 |
| MfeI | CAATTG | 1 cut(s) | 822 |
| MluCI | AATT | 3 cut(s) | 104, 293, 822 |
| MluI | ACGCGT | 2 cut(s) | 1044, 1075 |
| MmeI | TCCRAC | 3 cut(s) | 304, 642, 832 |
| MroXI | GAANNNNTTC | 1 cut(s) | 845 |
| MseI | TTAA | 2 cut(s) | 339, 675 |
| MspI | CCGG | 1 cut(s) | 778 |
| MunI | CAATTG | 1 cut(s) | 822 |
| MvnI | CGCG | 3 cut(s) | 878, 1046, 1077 |
| NdeII | GATC | 7 cut(s) | 82, 160, 276, 460, 744, 800, 906 |
| NlaIII | CATG | 4 cut(s) | 28, 388, 467, 709 |
| NlaIV | GGNNCC | 3 cut(s) | 776, 797, 856 |
| NmuCI | GTSAC | 1 cut(s) | 250 |
| NspV | TTCGAA | 2 cut(s) | 634, 976 |
| PceI | AGGCCT | 1 cut(s) | 114 |
| PciSI | GCTCTTC | 2 cut(s) | 508, 947 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 894 |
| PdmI | GAANNNNTTC | 1 cut(s) | 845 |
| PfeI | GAWTC | 5 cut(s) | 39, 269, 543, 813, 973 |
| PspFI | CCCAGC | 1 cut(s) | 149 |
| PspN4I | GGNNCC | 3 cut(s) | 776, 797, 856 |
| PspPI | GGNCC | 3 cut(s) | 664, 775, 880 |
| RsaI | GTAC | 2 cut(s) | 47, 617 |
| RsaNI | GTAC | 2 cut(s) | 46, 616 |
| SapI | GCTCTTC | 2 cut(s) | 508, 947 |
| SaqAI | TTAA | 2 cut(s) | 339, 675 |
| Sau3AI | GATC | 7 cut(s) | 82, 160, 276, 460, 744, 800, 906 |
| Sau96I | GGNCC | 3 cut(s) | 664, 775, 880 |
| ScaI | AGTACT | 1 cut(s) | 617 |
| SfaNI | GCATC | 1 cut(s) | 527 |
| SfuI | TTCGAA | 2 cut(s) | 634, 976 |
| SinI | GGWCC | 2 cut(s) | 664, 880 |
| Sse9I | AATT | 3 cut(s) | 104, 293, 822 |
| SseBI | AGGCCT | 1 cut(s) | 114 |
| SsiI | CCGC | 3 cut(s) | 870, 878, 961 |
| SspMI | CTAG | 4 cut(s) | 80, 690, 722, 884 |
| StuI | AGGCCT | 1 cut(s) | 114 |
| StyI | CCWWGG | 1 cut(s) | 689 |
| TaaI | ACNGT | 2 cut(s) | 243, 682 |
| TaiI | ACGT | 3 cut(s) | 286, 831, 938 |
| TaqI | TCGA | 9 cut(s) | 232, 415, 526, 634, 816, 903, 909, 945, 976 |
| TasI | AATT | 3 cut(s) | 104, 293, 822 |
| TatI | WGTACW | 1 cut(s) | 615 |
| TfiI | GAWTC | 5 cut(s) | 39, 269, 543, 813, 973 |
| Tru1I | TTAA | 2 cut(s) | 339, 675 |
| Tru9I | TTAA | 2 cut(s) | 339, 675 |
| TseFI | GTSAC | 1 cut(s) | 250 |
| Tsp45I | GTSAC | 1 cut(s) | 250 |
| TspDTI | ATGAA | 4 cut(s) | 373, 497, 722, 753 |
| VpaK11BI | GGWCC | 2 cut(s) | 664, 880 |
| XbaI | TCTAGA | 1 cut(s) | 721 |
| XmaJI | CCTAGG | 1 cut(s) | 689 |
| XmiI | GTMKAC | 1 cut(s) | 918 |
| XmnI | GAANNNNTTC | 1 cut(s) | 845 |
| XspI | CTAG | 4 cut(s) | 80, 690, 722, 884 |
| ZraI | GACGTC | 2 cut(s) | 829, 936 |
| ZrmI | AGTACT | 1 cut(s) | 617 |