ribonuclease H protein
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AcsI | RAATTY | 2 cut(s) | 419, 575 |
| AfeI | AGCGCT | 1 cut(s) | 548 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 31 |
| AgeI | ACCGGT | 1 cut(s) | 51 |
| AgsI | TTSAA | 2 cut(s) | 387, 575 |
| AluBI | AGCT | 2 cut(s) | 139, 337 |
| AluI | AGCT | 2 cut(s) | 139, 337 |
| Alw26I | GTCTC | 2 cut(s) | 60, 101 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 475 |
| Ama87I | CYCGRG | 1 cut(s) | 42 |
| Aor51HI | AGCGCT | 1 cut(s) | 548 |
| ApeKI | GCWGC | 1 cut(s) | 488 |
| ApoI | RAATTY | 2 cut(s) | 419, 575 |
| AsiGI | ACCGGT | 1 cut(s) | 51 |
| AspLEI | GCGC | 1 cut(s) | 549 |
| AsuC2I | CCSGG | 1 cut(s) | 26 |
| AvaI | CYCGRG | 1 cut(s) | 42 |
| BaeGI | GKGCMC | 1 cut(s) | 49 |
| BbvCI | CCTCAGC | 1 cut(s) | 338 |
| BbvI | GCAGC | 1 cut(s) | 500 |
| BccI | CCATC | 4 cut(s) | 124, 260, 280, 618 |
| BceAI | ACGGC | 1 cut(s) | 155 |
| BclI | TGATCA | 1 cut(s) | 631 |
| BcnI | CCSGG | 1 cut(s) | 26 |
| BcoDI | GTCTC | 2 cut(s) | 60, 101 |
| BfaI | CTAG | 1 cut(s) | 86 |
| BfoI | RGCGCY | 1 cut(s) | 550 |
| BisI | GCNGC | 1 cut(s) | 489 |
| BlsI | GCNGC | 1 cut(s) | 490 |
| Bme1390I | CCNGG | 1 cut(s) | 26 |
| BmeT110I | CYCGRG | 1 cut(s) | 42 |
| BmrFI | CCNGG | 1 cut(s) | 26 |
| BmrI | ACTGGG | 1 cut(s) | 318 |
| BmsI | GCATC | 1 cut(s) | 136 |
| BmuI | ACTGGG | 1 cut(s) | 318 |
| Bpu10I | CCTNAGC | 1 cut(s) | 338 |
| BpuMI | CCSGG | 1 cut(s) | 26 |
| BsaI | GGTCTC | 1 cut(s) | 60 |
| BsaJI | CCNNGG | 2 cut(s) | 25, 41 |
| BsaWI | WCCGGW | 1 cut(s) | 51 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 31 |
| Bse118I | RCCGGY | 1 cut(s) | 51 |
| Bse1I | ACTGG | 1 cut(s) | 313 |
| BseDI | CCNNGG | 2 cut(s) | 25, 41 |
| BseGI | GGATG | 1 cut(s) | 433 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 31 |
| BseMII | CTCAG | 2 cut(s) | 329, 467 |
| BseNI | ACTGG | 1 cut(s) | 313 |
| BseRI | GAGGAG | 1 cut(s) | 210 |
| BseSI | GKGCMC | 1 cut(s) | 49 |
| BseXI | GCAGC | 1 cut(s) | 500 |
| BshTI | ACCGGT | 1 cut(s) | 51 |
| BsiHKCI | CYCGRG | 1 cut(s) | 42 |
| BsiSI | CCGG | 3 cut(s) | 25, 52, 485 |
| BslFI | GGGAC | 1 cut(s) | 252 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 31 |
| BsmAI | GTCTC | 2 cut(s) | 60, 101 |
| BsmFI | GGGAC | 1 cut(s) | 252 |
| Bso31I | GGTCTC | 1 cut(s) | 60 |
| BsoBI | CYCGRG | 1 cut(s) | 42 |
| Bsp1286I | GDGCHC | 1 cut(s) | 49 |
| Bsp143I | GATC | 3 cut(s) | 76, 458, 631 |
| BspCNI | CTCAG | 2 cut(s) | 330, 468 |
| BspQI | GCTCTTC | 2 cut(s) | 129, 537 |
| BspTNI | GGTCTC | 1 cut(s) | 60 |
| BsrFI | RCCGGY | 1 cut(s) | 51 |
| BsrI | ACTGG | 1 cut(s) | 313 |
| BssAI | RCCGGY | 1 cut(s) | 51 |
| BssECI | CCNNGG | 2 cut(s) | 25, 41 |
| BssMI | GATC | 3 cut(s) | 76, 458, 631 |
| Bst4CI | ACNGT | 1 cut(s) | 382 |
| Bst6I | CTCTTC | 4 cut(s) | 129, 445, 537, 648 |
| BstC8I | GCNNGC | 1 cut(s) | 273 |
| BstDEI | CTNAG | 4 cut(s) | 59, 71, 338, 476 |
| BstF5I | GGATG | 1 cut(s) | 433 |
| BstH2I | RGCGCY | 1 cut(s) | 550 |
| BstHHI | GCGC | 1 cut(s) | 549 |
| BstKTI | GATC | 3 cut(s) | 79, 461, 634 |
| BstMAI | GTCTC | 2 cut(s) | 60, 101 |
| BstMBI | GATC | 3 cut(s) | 76, 458, 631 |
| BstSCI | CCNGG | 1 cut(s) | 24 |
| BstSLI | GKGCMC | 1 cut(s) | 49 |
| BstV1I | GCAGC | 1 cut(s) | 500 |
| BtgZI | GCGATG | 1 cut(s) | 543 |
| BtsCI | GGATG | 1 cut(s) | 433 |
| Cac8I | GCNNGC | 1 cut(s) | 273 |
| CaiI | CAGNNNCTG | 1 cut(s) | 475 |
| CfoI | GCGC | 1 cut(s) | 549 |
| Cfr10I | RCCGGY | 1 cut(s) | 51 |
| CseI | GACGC | 1 cut(s) | 375 |
| CspAI | ACCGGT | 1 cut(s) | 51 |
| CviJI | RGCY | 6 cut(s) | 139, 271, 275, 337, 393, 584 |
| CviKI_1 | RGCY | 6 cut(s) | 139, 271, 275, 337, 393, 584 |
| DdeI | CTNAG | 4 cut(s) | 59, 71, 338, 476 |
| DpnI | GATC | 3 cut(s) | 78, 460, 633 |
| DpnII | GATC | 3 cut(s) | 76, 458, 631 |
| Eam1104I | CTCTTC | 4 cut(s) | 129, 445, 537, 648 |
| EarI | CTCTTC | 4 cut(s) | 129, 445, 537, 648 |
| Eco31I | GGTCTC | 1 cut(s) | 60 |
| Eco47III | AGCGCT | 1 cut(s) | 548 |
| Eco88I | CYCGRG | 1 cut(s) | 42 |
| FaiI | YATR | 7 cut(s) | 92, 261, 318, 349, 496, 581, 636 |
| FaqI | GGGAC | 1 cut(s) | 252 |
| FbaI | TGATCA | 1 cut(s) | 631 |
| Fnu4HI | GCNGC | 1 cut(s) | 489 |
| FokI | GGATG | 1 cut(s) | 440 |
| Fsp4HI | GCNGC | 1 cut(s) | 489 |
| FspBI | CTAG | 1 cut(s) | 86 |
| GlaI | GCGC | 1 cut(s) | 548 |
| GluI | GCNGC | 1 cut(s) | 489 |
| HaeII | RGCGCY | 1 cut(s) | 550 |
| HapII | CCGG | 3 cut(s) | 25, 52, 485 |
| HgaI | GACGC | 1 cut(s) | 375 |
| HhaI | GCGC | 1 cut(s) | 549 |
| Hin6I | GCGC | 1 cut(s) | 547 |
| HinP1I | GCGC | 1 cut(s) | 547 |
| HinfI | GANTC | 2 cut(s) | 410, 472 |
| HpaII | CCGG | 3 cut(s) | 25, 52, 485 |
| Hpy188I | TCNGA | 7 cut(s) | 129, 285, 365, 436, 471, 477, 631 |
| Hpy188III | TCNNGA | 2 cut(s) | 326, 521 |
| Hpy99I | CGWCG | 2 cut(s) | 369, 609 |
| HpyAV | CCTTC | 2 cut(s) | 223, 518 |
| HpyCH4III | ACNGT | 1 cut(s) | 382 |
| HpyCH4V | TGCA | 1 cut(s) | 154 |
| HpyF3I | CTNAG | 4 cut(s) | 59, 71, 338, 476 |
| HspAI | GCGC | 1 cut(s) | 547 |
| Ksp22I | TGATCA | 1 cut(s) | 631 |
| Kzo9I | GATC | 3 cut(s) | 76, 458, 631 |
| LguI | GCTCTTC | 2 cut(s) | 129, 537 |
| LpnPI | CCDG | 7 cut(s) | 38, 65, 174, 257, 294, 379, 498 |
| Lsp1109I | GCAGC | 1 cut(s) | 500 |
| LweI | GCATC | 1 cut(s) | 136 |
| MaeI | CTAG | 1 cut(s) | 86 |
| MalI | GATC | 3 cut(s) | 78, 460, 633 |
| MboI | GATC | 3 cut(s) | 76, 458, 631 |
| MboII | GAAGA | 5 cut(s) | 146, 366, 462, 554, 635 |
| MhlI | GDGCHC | 1 cut(s) | 49 |
| MluCI | AATT | 6 cut(s) | 112, 244, 356, 419, 575, 587 |
| MmeI | TCCRAC | 1 cut(s) | 388 |
| MnlI | CCTC | 7 cut(s) | 51, 112, 188, 191, 229, 333, 651 |
| MseI | TTAA | 1 cut(s) | 101 |
| MslI | CAYNNNNRTG | 1 cut(s) | 264 |
| MspA1I | CMGCKG | 1 cut(s) | 337 |
| MspI | CCGG | 3 cut(s) | 25, 52, 485 |
| MspR9I | CCNGG | 1 cut(s) | 26 |
| NciI | CCSGG | 1 cut(s) | 26 |
| NdeII | GATC | 3 cut(s) | 76, 458, 631 |
| PciSI | GCTCTTC | 2 cut(s) | 129, 537 |
| PfeI | GAWTC | 2 cut(s) | 410, 472 |
| PinAI | ACCGGT | 1 cut(s) | 51 |
| PkrI | GCNGC | 1 cut(s) | 490 |
| PstNI | CAGNNNCTG | 1 cut(s) | 475 |
| PvuII | CAGCTG | 1 cut(s) | 337 |
| RseI | CAYNNNNRTG | 1 cut(s) | 264 |
| SapI | GCTCTTC | 2 cut(s) | 129, 537 |
| SaqAI | TTAA | 1 cut(s) | 101 |
| SatI | GCNGC | 1 cut(s) | 489 |
| Sau3AI | GATC | 3 cut(s) | 76, 458, 631 |
| ScrFI | CCNGG | 1 cut(s) | 26 |
| SduI | GDGCHC | 1 cut(s) | 49 |
| SetI | ASST | 9 cut(s) | 43, 123, 141, 193, 202, 234, 339, 627, 643 |
| SfaNI | GCATC | 1 cut(s) | 136 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 264 |
| SmlI | CTYRAG | 1 cut(s) | 10 |
| SmoI | CTYRAG | 1 cut(s) | 10 |
| Sse9I | AATT | 6 cut(s) | 112, 244, 356, 419, 575, 587 |
| SspMI | CTAG | 1 cut(s) | 86 |
| StyD4I | CCNGG | 1 cut(s) | 24 |
| TaaI | ACNGT | 1 cut(s) | 382 |
| TaqI | TCGA | 2 cut(s) | 325, 512 |
| TasI | AATT | 6 cut(s) | 112, 244, 356, 419, 575, 587 |
| TfiI | GAWTC | 2 cut(s) | 410, 472 |
| Tru1I | TTAA | 1 cut(s) | 101 |
| Tru9I | TTAA | 1 cut(s) | 101 |
| TseI | GCWGC | 1 cut(s) | 488 |
| TspDTI | ATGAA | 2 cut(s) | 17, 432 |
| XapI | RAATTY | 2 cut(s) | 419, 575 |
| XspI | CTAG | 1 cut(s) | 86 |