ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Exo_endo_phos | PF03372 | 5 - 192 | 2.6e-09 | Endonuclease/Exonuclease/phosphatase family |
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccBSI | CCGCTC | 1 cut(s) | 565 |
| AciI | CCGC | 1 cut(s) | 565 |
| AclWI | GGATC | 2 cut(s) | 3, 16 |
| AcsI | RAATTY | 2 cut(s) | 106, 402 |
| AfaI | GTAC | 1 cut(s) | 547 |
| AgeI | ACCGGT | 1 cut(s) | 307 |
| AgsI | TTSAA | 3 cut(s) | 112, 671, 734 |
| AluBI | AGCT | 2 cut(s) | 551, 595 |
| AluI | AGCT | 2 cut(s) | 551, 595 |
| Alw21I | GWGCWC | 1 cut(s) | 475 |
| Alw26I | GTCTC | 1 cut(s) | 18 |
| AlwI | GGATC | 2 cut(s) | 3, 16 |
| Ama87I | CYCGRG | 1 cut(s) | 175 |
| AoxI | GGCC | 3 cut(s) | 713, 796, 824 |
| ApoI | RAATTY | 2 cut(s) | 106, 402 |
| AseI | ATTAAT | 1 cut(s) | 774 |
| AsiGI | ACCGGT | 1 cut(s) | 307 |
| AspS9I | GGNCC | 5 cut(s) | 371, 714, 744, 796, 824 |
| AsuC2I | CCSGG | 1 cut(s) | 13 |
| AsuNHI | GCTAGC | 1 cut(s) | 356 |
| AvaI | CYCGRG | 1 cut(s) | 175 |
| AvaII | GGWCC | 2 cut(s) | 371, 744 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 240, 273 |
| BamHI | GGATCC | 1 cut(s) | 8 |
| BbsI | GAAGAC | 1 cut(s) | 428 |
| Bbv12I | GWGCWC | 1 cut(s) | 475 |
| BccI | CCATC | 3 cut(s) | 25, 263, 634 |
| BcnI | CCSGG | 1 cut(s) | 13 |
| BcoDI | GTCTC | 1 cut(s) | 18 |
| BfaI | CTAG | 2 cut(s) | 117, 357 |
| Bme1390I | CCNGG | 1 cut(s) | 13 |
| Bme18I | GGWCC | 2 cut(s) | 371, 744 |
| BmeT110I | CYCGRG | 1 cut(s) | 175 |
| BmgT120I | GGNCC | 5 cut(s) | 371, 714, 744, 796, 824 |
| BmiI | GGNNCC | 7 cut(s) | 10, 306, 372, 681, 716, 797, 825 |
| BmrFI | CCNGG | 1 cut(s) | 13 |
| BmsI | GCATC | 1 cut(s) | 421 |
| BmtI | GCTAGC | 1 cut(s) | 360 |
| BoxI | GACNNNNGTC | 1 cut(s) | 654 |
| BpiI | GAAGAC | 1 cut(s) | 428 |
| BpuMI | CCSGG | 1 cut(s) | 13 |
| BsaI | GGTCTC | 1 cut(s) | 18 |
| BsaJI | CCNNGG | 2 cut(s) | 149, 374 |
| BsaWI | WCCGGW | 1 cut(s) | 307 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 359, 389 |
| Bse118I | RCCGGY | 1 cut(s) | 307 |
| Bse1I | ACTGG | 1 cut(s) | 514 |
| BseDI | CCNNGG | 2 cut(s) | 149, 374 |
| BseGI | GGATG | 2 cut(s) | 274, 436 |
| BseNI | ACTGG | 1 cut(s) | 514 |
| BseRI | GAGGAG | 2 cut(s) | 214, 802 |
| BshFI | GGCC | 3 cut(s) | 715, 798, 826 |
| BshTI | ACCGGT | 1 cut(s) | 307 |
| BsiHKAI | GWGCWC | 1 cut(s) | 475 |
| BsiHKCI | CYCGRG | 1 cut(s) | 175 |
| BsiSI | CCGG | 2 cut(s) | 13, 308 |
| BslFI | GGGAC | 2 cut(s) | 167, 404 |
| BsmAI | GTCTC | 1 cut(s) | 18 |
| BsmFI | GGGAC | 2 cut(s) | 167, 404 |
| BsnI | GGCC | 3 cut(s) | 715, 798, 826 |
| Bso31I | GGTCTC | 1 cut(s) | 18 |
| BsoBI | CYCGRG | 1 cut(s) | 175 |
| Bsp1286I | GDGCHC | 1 cut(s) | 475 |
| Bsp143I | GATC | 3 cut(s) | 8, 571, 768 |
| BspACI | CCGC | 1 cut(s) | 565 |
| BspANI | GGCC | 3 cut(s) | 715, 798, 826 |
| BspHI | TCATGA | 2 cut(s) | 415, 478 |
| BspLI | GGNNCC | 7 cut(s) | 10, 306, 372, 681, 716, 797, 825 |
| BspOI | GCTAGC | 1 cut(s) | 360 |
| BspPI | GGATC | 2 cut(s) | 3, 16 |
| BspQI | GCTCTTC | 1 cut(s) | 480 |
| BspTNI | GGTCTC | 1 cut(s) | 18 |
| BsrBI | CCGCTC | 1 cut(s) | 565 |
| BsrFI | RCCGGY | 1 cut(s) | 307 |
| BsrI | ACTGG | 1 cut(s) | 514 |
| BssAI | RCCGGY | 1 cut(s) | 307 |
| BssECI | CCNNGG | 2 cut(s) | 149, 374 |
| BssMI | GATC | 3 cut(s) | 8, 571, 768 |
| Bst4CI | ACNGT | 1 cut(s) | 395 |
| Bst6I | CTCTTC | 3 cut(s) | 235, 480, 750 |
| BstC8I | GCNNGC | 2 cut(s) | 323, 358 |
| BstDSI | CCRYGG | 1 cut(s) | 374 |
| BstF5I | GGATG | 2 cut(s) | 274, 436 |
| BstKTI | GATC | 3 cut(s) | 11, 574, 771 |
| BstMAI | GTCTC | 1 cut(s) | 18 |
| BstMBI | GATC | 3 cut(s) | 8, 571, 768 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 654 |
| BstSCI | CCNGG | 1 cut(s) | 11 |
| BstV2I | GAAGAC | 1 cut(s) | 428 |
| BstX2I | RGATCY | 1 cut(s) | 8 |
| BstYI | RGATCY | 1 cut(s) | 8 |
| BsuRI | GGCC | 3 cut(s) | 715, 798, 826 |
| BtgI | CCRYGG | 1 cut(s) | 374 |
| BtsCI | GGATG | 2 cut(s) | 274, 436 |
| BtsIMutI | CAGTG | 1 cut(s) | 507 |
| Cac8I | GCNNGC | 2 cut(s) | 323, 358 |
| CciI | TCATGA | 2 cut(s) | 415, 478 |
| Cfr10I | RCCGGY | 1 cut(s) | 307 |
| Cfr13I | GGNCC | 5 cut(s) | 371, 714, 744, 796, 824 |
| CseI | GACGC | 1 cut(s) | 729 |
| Csp6I | GTAC | 1 cut(s) | 546 |
| CspAI | ACCGGT | 1 cut(s) | 307 |
| CviAII | CATG | 4 cut(s) | 93, 333, 416, 479 |
| CviQI | GTAC | 1 cut(s) | 546 |
| DpnI | GATC | 3 cut(s) | 10, 573, 770 |
| DpnII | GATC | 3 cut(s) | 8, 571, 768 |
| Eam1104I | CTCTTC | 3 cut(s) | 235, 480, 750 |
| EarI | CTCTTC | 3 cut(s) | 235, 480, 750 |
| Eco31I | GGTCTC | 1 cut(s) | 18 |
| Eco32I | GATATC | 1 cut(s) | 808 |
| Eco47I | GGWCC | 2 cut(s) | 371, 744 |
| Eco88I | CYCGRG | 1 cut(s) | 175 |
| EcoO109I | RGGNCCY | 1 cut(s) | 714 |
| EcoRV | GATATC | 1 cut(s) | 808 |
| FaeI | CATG | 4 cut(s) | 96, 336, 419, 482 |
| FaqI | GGGAC | 2 cut(s) | 167, 404 |
| FatI | CATG | 4 cut(s) | 92, 332, 415, 478 |
| FokI | GGATG | 2 cut(s) | 281, 443 |
| FspBI | CTAG | 2 cut(s) | 117, 357 |
| HaeIII | GGCC | 3 cut(s) | 715, 798, 826 |
| HapII | CCGG | 2 cut(s) | 13, 308 |
| HgaI | GACGC | 1 cut(s) | 729 |
| Hin1II | CATG | 4 cut(s) | 96, 336, 419, 482 |
| HinfI | GANTC | 1 cut(s) | 412 |
| HpaII | CCGG | 2 cut(s) | 13, 308 |
| Hpy166II | GTNNAC | 1 cut(s) | 522 |
| Hpy188I | TCNGA | 8 cut(s) | 150, 192, 584, 603, 649, 660, 812, 861 |
| Hpy188III | TCNNGA | 3 cut(s) | 416, 479, 637 |
| Hpy8I | GTNNAC | 1 cut(s) | 522 |
| Hpy99I | CGWCG | 2 cut(s) | 540, 723 |
| HpyAV | CCTTC | 2 cut(s) | 50, 155 |
| HpyCH4III | ACNGT | 1 cut(s) | 395 |
| HpyCH4IV | ACGT | 1 cut(s) | 17 |
| HpySE526I | ACGT | 1 cut(s) | 17 |
| Hsp92II | CATG | 4 cut(s) | 96, 336, 419, 482 |
| Kzo9I | GATC | 3 cut(s) | 8, 571, 768 |
| LguI | GCTCTTC | 1 cut(s) | 480 |
| LmnI | GCTCC | 2 cut(s) | 592, 685 |
| LpnPI | CCDG | 6 cut(s) | 26, 41, 69, 307, 321, 495 |
| LweI | GCATC | 1 cut(s) | 421 |
| MaeI | CTAG | 2 cut(s) | 117, 357 |
| MaeII | ACGT | 1 cut(s) | 17 |
| MaeIII | GTNAC | 3 cut(s) | 256, 286, 634 |
| MalI | GATC | 3 cut(s) | 10, 573, 770 |
| MbiI | CCGCTC | 1 cut(s) | 565 |
| MboI | GATC | 3 cut(s) | 8, 571, 768 |
| MboII | GAAGA | 8 cut(s) | 170, 222, 229, 433, 467, 746, 764, 767 |
| MfeI | CAATTG | 1 cut(s) | 350 |
| MflI | RGATCY | 1 cut(s) | 8 |
| MhlI | GDGCHC | 1 cut(s) | 475 |
| MluCI | AATT | 5 cut(s) | 106, 350, 402, 460, 597 |
| MseI | TTAA | 3 cut(s) | 558, 774, 865 |
| MslI | CAYNNNNRTG | 1 cut(s) | 483 |
| MspI | CCGG | 2 cut(s) | 13, 308 |
| MspR9I | CCNGG | 1 cut(s) | 13 |
| MunI | CAATTG | 1 cut(s) | 350 |
| NciI | CCSGG | 1 cut(s) | 13 |
| NdeII | GATC | 3 cut(s) | 8, 571, 768 |
| NheI | GCTAGC | 1 cut(s) | 356 |
| NlaIII | CATG | 4 cut(s) | 96, 336, 419, 482 |
| NlaIV | GGNNCC | 7 cut(s) | 10, 306, 372, 681, 716, 797, 825 |
| NmuCI | GTSAC | 2 cut(s) | 286, 634 |
| PagI | TCATGA | 2 cut(s) | 415, 478 |
| PciSI | GCTCTTC | 1 cut(s) | 480 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 715 |
| PfeI | GAWTC | 1 cut(s) | 412 |
| PfoI | TCCNGGA | 1 cut(s) | 11 |
| PinAI | ACCGGT | 1 cut(s) | 307 |
| PshAI | GACNNNNGTC | 1 cut(s) | 654 |
| PshBI | ATTAAT | 1 cut(s) | 774 |
| PspN4I | GGNNCC | 7 cut(s) | 10, 306, 372, 681, 716, 797, 825 |
| PspPI | GGNCC | 5 cut(s) | 371, 714, 744, 796, 824 |
| PsuI | RGATCY | 1 cut(s) | 8 |
| RsaI | GTAC | 1 cut(s) | 547 |
| RsaNI | GTAC | 1 cut(s) | 546 |
| RseI | CAYNNNNRTG | 1 cut(s) | 483 |
| SapI | GCTCTTC | 1 cut(s) | 480 |
| SaqAI | TTAA | 3 cut(s) | 558, 774, 865 |
| Sau3AI | GATC | 3 cut(s) | 8, 571, 768 |
| Sau96I | GGNCC | 5 cut(s) | 371, 714, 744, 796, 824 |
| ScrFI | CCNGG | 1 cut(s) | 13 |
| SduI | GDGCHC | 1 cut(s) | 475 |
| SetI | ASST | 8 cut(s) | 20, 30, 58, 92, 452, 547, 553, 597 |
| SfaNI | GCATC | 1 cut(s) | 421 |
| SinI | GGWCC | 2 cut(s) | 371, 744 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 483 |
| Sse9I | AATT | 5 cut(s) | 106, 350, 402, 460, 597 |
| SsiI | CCGC | 1 cut(s) | 565 |
| SspI | AATATT | 1 cut(s) | 208 |
| SspMI | CTAG | 2 cut(s) | 117, 357 |
| StyD4I | CCNGG | 1 cut(s) | 11 |
| TaaI | ACNGT | 1 cut(s) | 395 |
| TaiI | ACGT | 1 cut(s) | 20 |
| TaqI | TCGA | 1 cut(s) | 535 |
| TasI | AATT | 5 cut(s) | 106, 350, 402, 460, 597 |
| TfiI | GAWTC | 1 cut(s) | 412 |
| Tru1I | TTAA | 3 cut(s) | 558, 774, 865 |
| Tru9I | TTAA | 3 cut(s) | 558, 774, 865 |
| TscAI | CASTG | 1 cut(s) | 514 |
| TseFI | GTSAC | 2 cut(s) | 286, 634 |
| Tsp45I | GTSAC | 2 cut(s) | 286, 634 |
| TspDTI | ATGAA | 5 cut(s) | 32, 38, 404, 414, 467 |
| TspGWI | ACGGA | 3 cut(s) | 363, 455, 553 |
| TspRI | CASTG | 1 cut(s) | 514 |
| VpaK11BI | GGWCC | 2 cut(s) | 371, 744 |
| VspI | ATTAAT | 1 cut(s) | 774 |
| XapI | RAATTY | 2 cut(s) | 106, 402 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 834 |
| XspI | CTAG | 2 cut(s) | 117, 357 |