ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 1 cut(s) | 246 |
| AclWI | GGATC | 3 cut(s) | 211, 335, 378 |
| AcsI | RAATTY | 2 cut(s) | 438, 572 |
| AfaI | GTAC | 2 cut(s) | 622, 629 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 812 |
| AgeI | ACCGGT | 1 cut(s) | 854 |
| AgsI | TTSAA | 4 cut(s) | 91, 433, 605, 692 |
| AjnI | CCWGG | 1 cut(s) | 304 |
| AleI | CACNNNNGTG | 1 cut(s) | 613 |
| AluBI | AGCT | 2 cut(s) | 701, 724 |
| AluI | AGCT | 2 cut(s) | 701, 724 |
| AlwI | GGATC | 3 cut(s) | 211, 335, 378 |
| AoxI | GGCC | 3 cut(s) | 467, 598, 835 |
| ApeKI | GCWGC | 3 cut(s) | 341, 389, 701 |
| ApoI | RAATTY | 2 cut(s) | 438, 572 |
| AsiGI | ACCGGT | 1 cut(s) | 854 |
| AspLEI | GCGC | 1 cut(s) | 487 |
| AspS9I | GGNCC | 3 cut(s) | 467, 670, 798 |
| AsuC2I | CCSGG | 1 cut(s) | 297 |
| AsuHPI | GGTGA | 1 cut(s) | 773 |
| AvaII | GGWCC | 2 cut(s) | 670, 798 |
| BanII | GRGCYC | 1 cut(s) | 70 |
| BauI | CACGAG | 1 cut(s) | 474 |
| BbvI | GCAGC | 3 cut(s) | 353, 376, 688 |
| BccI | CCATC | 2 cut(s) | 158, 194 |
| BceAI | ACGGC | 1 cut(s) | 537 |
| BciT130I | CCWGG | 1 cut(s) | 306 |
| BcnI | CCSGG | 1 cut(s) | 297 |
| BfaI | CTAG | 4 cut(s) | 99, 113, 125, 234 |
| BfmI | CTRYAG | 2 cut(s) | 390, 480 |
| BfoI | RGCGCY | 1 cut(s) | 488 |
| BisI | GCNGC | 3 cut(s) | 342, 390, 702 |
| BlsI | GCNGC | 3 cut(s) | 343, 391, 703 |
| Bme1390I | CCNGG | 2 cut(s) | 297, 306 |
| Bme18I | GGWCC | 2 cut(s) | 670, 798 |
| BmgT120I | GGNCC | 3 cut(s) | 467, 670, 798 |
| BmiI | GGNNCC | 2 cut(s) | 294, 800 |
| BmrFI | CCNGG | 2 cut(s) | 297, 306 |
| BmrI | ACTGGG | 2 cut(s) | 654, 822 |
| BmsI | GCATC | 3 cut(s) | 136, 366, 761 |
| BmuI | ACTGGG | 2 cut(s) | 654, 822 |
| BoxI | GACNNNNGTC | 3 cut(s) | 522, 675, 796 |
| BpuEI | CTTGAG | 1 cut(s) | 704 |
| BpuMI | CCSGG | 1 cut(s) | 297 |
| BsaJI | CCNNGG | 4 cut(s) | 163, 304, 305, 410 |
| BsaWI | WCCGGW | 1 cut(s) | 854 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 239, 269, 640, 670 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 812 |
| Bse118I | RCCGGY | 1 cut(s) | 854 |
| Bse1I | ACTGG | 3 cut(s) | 85, 660, 817 |
| BseBI | CCWGG | 1 cut(s) | 306 |
| BseDI | CCNNGG | 4 cut(s) | 163, 304, 305, 410 |
| BseGI | GGATG | 2 cut(s) | 18, 783 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 812 |
| BseMII | CTCAG | 1 cut(s) | 716 |
| BseNI | ACTGG | 3 cut(s) | 85, 660, 817 |
| BseRI | GAGGAG | 2 cut(s) | 247, 462 |
| BseXI | GCAGC | 3 cut(s) | 353, 376, 688 |
| BshFI | GGCC | 3 cut(s) | 469, 600, 837 |
| BshTI | ACCGGT | 1 cut(s) | 854 |
| BsiSI | CCGG | 3 cut(s) | 296, 502, 855 |
| BslFI | GGGAC | 3 cut(s) | 225, 663, 784 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 812 |
| BsmFI | GGGAC | 3 cut(s) | 225, 663, 784 |
| BsnI | GGCC | 3 cut(s) | 469, 600, 837 |
| Bsp1286I | GDGCHC | 1 cut(s) | 70 |
| Bsp143I | GATC | 5 cut(s) | 136, 203, 327, 352, 370 |
| BspANI | GGCC | 3 cut(s) | 469, 600, 837 |
| BspCNI | CTCAG | 1 cut(s) | 717 |
| BspLI | GGNNCC | 2 cut(s) | 294, 800 |
| BspMAI | CTGCAG | 1 cut(s) | 394 |
| BspPI | GGATC | 3 cut(s) | 211, 335, 378 |
| BsrFI | RCCGGY | 1 cut(s) | 854 |
| BsrI | ACTGG | 3 cut(s) | 85, 660, 817 |
| BssAI | RCCGGY | 1 cut(s) | 854 |
| BssECI | CCNNGG | 4 cut(s) | 163, 304, 305, 410 |
| BssMI | GATC | 5 cut(s) | 136, 203, 327, 352, 370 |
| BssSI | CACGAG | 1 cut(s) | 474 |
| BssT1I | CCWWGG | 2 cut(s) | 163, 410 |
| Bst2BI | CACGAG | 1 cut(s) | 474 |
| Bst2UI | CCWGG | 1 cut(s) | 306 |
| Bst4CI | ACNGT | 3 cut(s) | 35, 521, 638 |
| BstC8I | GCNNGC | 1 cut(s) | 424 |
| BstDEI | CTNAG | 1 cut(s) | 725 |
| BstF5I | GGATG | 2 cut(s) | 18, 783 |
| BstH2I | RGCGCY | 1 cut(s) | 488 |
| BstHHI | GCGC | 1 cut(s) | 487 |
| BstKTI | GATC | 5 cut(s) | 139, 206, 330, 355, 373 |
| BstMBI | GATC | 5 cut(s) | 136, 203, 327, 352, 370 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 491, 730 |
| BstNI | CCWGG | 1 cut(s) | 306 |
| BstPAI | GACNNNNGTC | 3 cut(s) | 522, 675, 796 |
| BstSCI | CCNGG | 2 cut(s) | 295, 304 |
| BstSFI | CTRYAG | 2 cut(s) | 390, 480 |
| BstV1I | GCAGC | 3 cut(s) | 353, 376, 688 |
| BstX2I | RGATCY | 2 cut(s) | 327, 370 |
| BstYI | RGATCY | 2 cut(s) | 327, 370 |
| BsuRI | GGCC | 3 cut(s) | 469, 600, 837 |
| BtgZI | GCGATG | 1 cut(s) | 784 |
| BtsCI | GGATG | 2 cut(s) | 18, 783 |
| BtsI | GCAGTG | 1 cut(s) | 774 |
| BtsIMutI | CAGTG | 2 cut(s) | 667, 774 |
| Cac8I | GCNNGC | 1 cut(s) | 424 |
| CfoI | GCGC | 1 cut(s) | 487 |
| Cfr10I | RCCGGY | 1 cut(s) | 854 |
| Cfr13I | GGNCC | 3 cut(s) | 467, 670, 798 |
| CseI | GACGC | 2 cut(s) | 232, 575 |
| Csp6I | GTAC | 2 cut(s) | 621, 628 |
| CspAI | ACCGGT | 1 cut(s) | 854 |
| CviAII | CATG | 5 cut(s) | 194, 366, 535, 561, 758 |
| CviQI | GTAC | 2 cut(s) | 621, 628 |
| DdeI | CTNAG | 1 cut(s) | 725 |
| DpnI | GATC | 5 cut(s) | 138, 205, 329, 354, 372 |
| DpnII | GATC | 5 cut(s) | 136, 203, 327, 352, 370 |
| Eco130I | CCWWGG | 2 cut(s) | 163, 410 |
| Eco147I | AGGCCT | 1 cut(s) | 600 |
| Eco24I | GRGCYC | 1 cut(s) | 70 |
| Eco47I | GGWCC | 2 cut(s) | 670, 798 |
| EcoRII | CCWGG | 1 cut(s) | 304 |
| EcoT14I | CCWWGG | 2 cut(s) | 163, 410 |
| EcoT38I | GRGCYC | 1 cut(s) | 70 |
| ErhI | CCWWGG | 2 cut(s) | 163, 410 |
| FaeI | CATG | 5 cut(s) | 197, 369, 538, 564, 761 |
| FaqI | GGGAC | 3 cut(s) | 225, 663, 784 |
| FatI | CATG | 5 cut(s) | 193, 365, 534, 560, 757 |
| FblI | GTMKAC | 1 cut(s) | 246 |
| Fnu4HI | GCNGC | 3 cut(s) | 342, 390, 702 |
| FokI | GGATG | 2 cut(s) | 5, 770 |
| FriOI | GRGCYC | 1 cut(s) | 70 |
| Fsp4HI | GCNGC | 3 cut(s) | 342, 390, 702 |
| FspBI | CTAG | 4 cut(s) | 99, 113, 125, 234 |
| GlaI | GCGC | 1 cut(s) | 486 |
| GluI | GCNGC | 3 cut(s) | 342, 390, 702 |
| HaeII | RGCGCY | 1 cut(s) | 488 |
| HaeIII | GGCC | 3 cut(s) | 469, 600, 837 |
| HapII | CCGG | 3 cut(s) | 296, 502, 855 |
| HgaI | GACGC | 2 cut(s) | 232, 575 |
| HhaI | GCGC | 1 cut(s) | 487 |
| Hin1II | CATG | 5 cut(s) | 197, 369, 538, 564, 761 |
| Hin6I | GCGC | 1 cut(s) | 485 |
| HinP1I | GCGC | 1 cut(s) | 485 |
| HincII | GTYRAC | 1 cut(s) | 247 |
| HindII | GTYRAC | 1 cut(s) | 247 |
| HinfI | GANTC | 3 cut(s) | 213, 540, 665 |
| HpaII | CCGG | 3 cut(s) | 296, 502, 855 |
| HphI | GGTGA | 1 cut(s) | 773 |
| Hpy166II | GTNNAC | 1 cut(s) | 247 |
| Hpy188I | TCNGA | 4 cut(s) | 105, 352, 375, 670 |
| Hpy188III | TCNNGA | 2 cut(s) | 356, 590 |
| Hpy8I | GTNNAC | 1 cut(s) | 247 |
| Hpy99I | CGWCG | 1 cut(s) | 248 |
| HpyAV | CCTTC | 1 cut(s) | 611 |
| HpyCH4III | ACNGT | 3 cut(s) | 35, 521, 638 |
| HpyCH4V | TGCA | 6 cut(s) | 197, 341, 379, 392, 704, 774 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 491, 730 |
| HpyF3I | CTNAG | 1 cut(s) | 725 |
| Hsp92II | CATG | 5 cut(s) | 197, 369, 538, 564, 761 |
| HspAI | GCGC | 1 cut(s) | 485 |
| Kzo9I | GATC | 5 cut(s) | 136, 203, 327, 352, 370 |
| LmnI | GCTCC | 2 cut(s) | 260, 583 |
| Lsp1109I | GCAGC | 3 cut(s) | 353, 376, 688 |
| LweI | GCATC | 3 cut(s) | 136, 366, 761 |
| MaeI | CTAG | 4 cut(s) | 99, 113, 125, 234 |
| MalI | GATC | 5 cut(s) | 138, 205, 329, 354, 372 |
| MboI | GATC | 5 cut(s) | 136, 203, 327, 352, 370 |
| MboII | GAAGA | 1 cut(s) | 103 |
| MflI | RGATCY | 2 cut(s) | 327, 370 |
| MhlI | GDGCHC | 1 cut(s) | 70 |
| MluCI | AATT | 6 cut(s) | 42, 438, 513, 572, 687, 843 |
| MlyI | GAGTC | 2 cut(s) | 207, 674 |
| MmeI | TCCRAC | 1 cut(s) | 648 |
| MnlI | CCTC | 6 cut(s) | 268, 480, 483, 590, 666, 739 |
| MslI | CAYNNNNRTG | 5 cut(s) | 144, 198, 276, 613, 762 |
| MspI | CCGG | 3 cut(s) | 296, 502, 855 |
| MspR9I | CCNGG | 2 cut(s) | 297, 306 |
| MvaI | CCWGG | 1 cut(s) | 306 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 491, 730 |
| NciI | CCSGG | 1 cut(s) | 297 |
| NdeII | GATC | 5 cut(s) | 136, 203, 327, 352, 370 |
| NlaIII | CATG | 5 cut(s) | 197, 369, 538, 564, 761 |
| NlaIV | GGNNCC | 2 cut(s) | 294, 800 |
| OliI | CACNNNNGTG | 1 cut(s) | 613 |
| PasI | CCCWGGG | 1 cut(s) | 305 |
| PceI | AGGCCT | 1 cut(s) | 600 |
| PfeI | GAWTC | 1 cut(s) | 540 |
| PinAI | ACCGGT | 1 cut(s) | 854 |
| PkrI | GCNGC | 3 cut(s) | 343, 391, 703 |
| PleI | GAGTC | 2 cut(s) | 207, 673 |
| PpsI | GAGTC | 2 cut(s) | 207, 673 |
| PshAI | GACNNNNGTC | 3 cut(s) | 522, 675, 796 |
| Psp6I | CCWGG | 1 cut(s) | 304 |
| PspGI | CCWGG | 1 cut(s) | 304 |
| PspN4I | GGNNCC | 2 cut(s) | 294, 800 |
| PspPI | GGNCC | 3 cut(s) | 467, 670, 798 |
| PstI | CTGCAG | 1 cut(s) | 394 |
| PsuI | RGATCY | 2 cut(s) | 327, 370 |
| RsaI | GTAC | 2 cut(s) | 622, 629 |
| RsaNI | GTAC | 2 cut(s) | 621, 628 |
| RseI | CAYNNNNRTG | 5 cut(s) | 144, 198, 276, 613, 762 |
| SalI | GTCGAC | 1 cut(s) | 245 |
| SatI | GCNGC | 3 cut(s) | 342, 390, 702 |
| Sau3AI | GATC | 5 cut(s) | 136, 203, 327, 352, 370 |
| Sau96I | GGNCC | 3 cut(s) | 467, 670, 798 |
| SchI | GAGTC | 2 cut(s) | 207, 674 |
| ScrFI | CCNGG | 2 cut(s) | 297, 306 |
| SduI | GDGCHC | 1 cut(s) | 70 |
| SetI | ASST | 8 cut(s) | 100, 350, 400, 412, 658, 703, 726, 808 |
| SfaNI | GCATC | 3 cut(s) | 136, 366, 761 |
| SfcI | CTRYAG | 2 cut(s) | 390, 480 |
| SinI | GGWCC | 2 cut(s) | 670, 798 |
| SmiMI | CAYNNNNRTG | 5 cut(s) | 144, 198, 276, 613, 762 |
| SmlI | CTYRAG | 1 cut(s) | 719 |
| SmoI | CTYRAG | 1 cut(s) | 719 |
| Sse9I | AATT | 6 cut(s) | 42, 438, 513, 572, 687, 843 |
| SseBI | AGGCCT | 1 cut(s) | 600 |
| SspMI | CTAG | 4 cut(s) | 99, 113, 125, 234 |
| StuI | AGGCCT | 1 cut(s) | 600 |
| StyD4I | CCNGG | 2 cut(s) | 295, 304 |
| StyI | CCWWGG | 2 cut(s) | 163, 410 |
| TaaI | ACNGT | 3 cut(s) | 35, 521, 638 |
| TaqI | TCGA | 3 cut(s) | 246, 355, 566 |
| TasI | AATT | 6 cut(s) | 42, 438, 513, 572, 687, 843 |
| TfiI | GAWTC | 1 cut(s) | 540 |
| TscAI | CASTG | 2 cut(s) | 667, 781 |
| TseI | GCWGC | 3 cut(s) | 341, 389, 701 |
| TspDTI | ATGAA | 3 cut(s) | 69, 450, 815 |
| TspRI | CASTG | 2 cut(s) | 667, 781 |
| VpaK11BI | GGWCC | 2 cut(s) | 670, 798 |
| XapI | RAATTY | 2 cut(s) | 438, 572 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 809 |
| XmiI | GTMKAC | 1 cut(s) | 246 |
| XspI | CTAG | 4 cut(s) | 99, 113, 125, 234 |