ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 2 cut(s) | 554, 572 |
| AclI | AACGTT | 1 cut(s) | 1039 |
| AcsI | RAATTY | 1 cut(s) | 840 |
| AcuI | CTGAAG | 1 cut(s) | 616 |
| AcvI | CACGTG | 1 cut(s) | 473 |
| AfaI | GTAC | 3 cut(s) | 468, 772, 953 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 809, 810 |
| AgsI | TTSAA | 7 cut(s) | 83, 110, 377, 743, 758, 910, 1019 |
| AjnI | CCWGG | 1 cut(s) | 362 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 569, 601 |
| AluBI | AGCT | 1 cut(s) | 386 |
| AluI | AGCT | 1 cut(s) | 386 |
| ApeKI | GCWGC | 5 cut(s) | 338, 476, 479, 482, 799 |
| ApoI | RAATTY | 1 cut(s) | 840 |
| AspA2I | CCTAGG | 1 cut(s) | 713 |
| AsuHPI | GGTGA | 1 cut(s) | 34 |
| AsuII | TTCGAA | 1 cut(s) | 352 |
| AvrII | CCTAGG | 1 cut(s) | 713 |
| BauI | CACGAG | 1 cut(s) | 387 |
| BbrPI | CACGTG | 1 cut(s) | 473 |
| BbvI | GCAGC | 5 cut(s) | 350, 463, 466, 469, 786 |
| BccI | CCATC | 1 cut(s) | 526 |
| BceAI | ACGGC | 1 cut(s) | 934 |
| BciT130I | CCWGG | 1 cut(s) | 364 |
| BfaI | CTAG | 4 cut(s) | 35, 122, 459, 714 |
| BglII | AGATCT | 2 cut(s) | 232, 619 |
| BisI | GCNGC | 5 cut(s) | 339, 477, 480, 483, 800 |
| BlnI | CCTAGG | 1 cut(s) | 713 |
| BlpI | GCTNAGC | 1 cut(s) | 189 |
| BlsI | GCNGC | 5 cut(s) | 340, 478, 481, 484, 801 |
| Bme1390I | CCNGG | 1 cut(s) | 364 |
| BmiI | GGNNCC | 3 cut(s) | 300, 815, 835 |
| BmrFI | CCNGG | 1 cut(s) | 364 |
| BmrI | ACTGGG | 1 cut(s) | 819 |
| BmsI | GCATC | 1 cut(s) | 832 |
| BmuI | ACTGGG | 1 cut(s) | 819 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 383, 415 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 189 |
| Bpu14I | TTCGAA | 1 cut(s) | 352 |
| Bsa29I | ATCGAT | 1 cut(s) | 513 |
| BsaAI | YACGTR | 3 cut(s) | 158, 473, 558 |
| BsaBI | GATNNNNATC | 2 cut(s) | 624, 672 |
| BsaJI | CCNNGG | 2 cut(s) | 59, 713 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 1024, 1054 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 809, 810 |
| Bse118I | RCCGGY | 1 cut(s) | 851 |
| Bse1I | ACTGG | 3 cut(s) | 601, 797, 814 |
| Bse3DI | GCAATG | 1 cut(s) | 492 |
| Bse8I | GATNNNNATC | 2 cut(s) | 624, 672 |
| BseBI | CCWGG | 1 cut(s) | 364 |
| BseCI | ATCGAT | 1 cut(s) | 513 |
| BseDI | CCNNGG | 2 cut(s) | 59, 713 |
| BseGI | GGATG | 1 cut(s) | 257 |
| BseJI | GATNNNNATC | 2 cut(s) | 624, 672 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 809, 810 |
| BseMI | GCAATG | 1 cut(s) | 492 |
| BseMII | CTCAG | 3 cut(s) | 279, 672, 765 |
| BseNI | ACTGG | 3 cut(s) | 601, 797, 814 |
| BseXI | GCAGC | 5 cut(s) | 350, 463, 466, 469, 786 |
| BseYI | CCCAGC | 1 cut(s) | 419 |
| BsgI | GTGCAG | 2 cut(s) | 249, 938 |
| BshVI | ATCGAT | 1 cut(s) | 513 |
| BsiSI | CCGG | 1 cut(s) | 852 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 809, 810 |
| Bsp119I | TTCGAA | 1 cut(s) | 352 |
| Bsp143I | GATC | 5 cut(s) | 147, 232, 510, 619, 667 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 189 |
| BspCNI | CTCAG | 3 cut(s) | 280, 671, 766 |
| BspDI | ATCGAT | 1 cut(s) | 513 |
| BspLI | GGNNCC | 3 cut(s) | 300, 815, 835 |
| BspT104I | TTCGAA | 1 cut(s) | 352 |
| BsrDI | GCAATG | 1 cut(s) | 492 |
| BsrFI | RCCGGY | 1 cut(s) | 851 |
| BsrI | ACTGG | 3 cut(s) | 601, 797, 814 |
| BssAI | RCCGGY | 1 cut(s) | 851 |
| BssECI | CCNNGG | 2 cut(s) | 59, 713 |
| BssMI | GATC | 5 cut(s) | 147, 232, 510, 619, 667 |
| BssNAI | GTATAC | 2 cut(s) | 555, 573 |
| BssSI | CACGAG | 1 cut(s) | 387 |
| BssT1I | CCWWGG | 2 cut(s) | 59, 713 |
| Bst1107I | GTATAC | 2 cut(s) | 555, 573 |
| Bst2BI | CACGAG | 1 cut(s) | 387 |
| Bst2UI | CCWGG | 1 cut(s) | 364 |
| Bst4CI | ACNGT | 2 cut(s) | 612, 864 |
| Bst6I | CTCTTC | 1 cut(s) | 1020 |
| BstBAI | YACGTR | 3 cut(s) | 158, 473, 558 |
| BstBI | TTCGAA | 1 cut(s) | 352 |
| BstC8I | GCNNGC | 2 cut(s) | 853, 857 |
| BstDEI | CTNAG | 5 cut(s) | 189, 288, 658, 774, 955 |
| BstF5I | GGATG | 1 cut(s) | 257 |
| BstKTI | GATC | 5 cut(s) | 150, 235, 513, 622, 670 |
| BstMBI | GATC | 5 cut(s) | 147, 232, 510, 619, 667 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 482 |
| BstNI | CCWGG | 1 cut(s) | 364 |
| BstSCI | CCNGG | 1 cut(s) | 362 |
| BstV1I | GCAGC | 5 cut(s) | 350, 463, 466, 469, 786 |
| BstX2I | RGATCY | 2 cut(s) | 232, 619 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 309 |
| BstYI | RGATCY | 2 cut(s) | 232, 619 |
| BstZ17I | GTATAC | 2 cut(s) | 555, 573 |
| Bsu15I | ATCGAT | 1 cut(s) | 513 |
| BsuTUI | ATCGAT | 1 cut(s) | 513 |
| BtsCI | GGATG | 1 cut(s) | 257 |
| BtsI | GCAGTG | 1 cut(s) | 647 |
| BtsIMutI | CAGTG | 2 cut(s) | 617, 647 |
| Cac8I | GCNNGC | 2 cut(s) | 853, 857 |
| Cfr10I | RCCGGY | 1 cut(s) | 851 |
| ClaI | ATCGAT | 1 cut(s) | 513 |
| CseI | GACGC | 1 cut(s) | 284 |
| CsiI | ACCWGGT | 1 cut(s) | 362 |
| Csp6I | GTAC | 3 cut(s) | 467, 771, 952 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 442, 477 |
| CviAII | CATG | 3 cut(s) | 76, 638, 877 |
| CviQI | GTAC | 3 cut(s) | 467, 771, 952 |
| DdeI | CTNAG | 5 cut(s) | 189, 288, 658, 774, 955 |
| DpnI | GATC | 5 cut(s) | 149, 234, 512, 621, 669 |
| DpnII | GATC | 5 cut(s) | 147, 232, 510, 619, 667 |
| DraI | TTTAAA | 1 cut(s) | 1045 |
| Eam1104I | CTCTTC | 1 cut(s) | 1020 |
| EarI | CTCTTC | 1 cut(s) | 1020 |
| Eco130I | CCWWGG | 2 cut(s) | 59, 713 |
| Eco57I | CTGAAG | 1 cut(s) | 616 |
| Eco72I | CACGTG | 1 cut(s) | 473 |
| EcoRII | CCWGG | 1 cut(s) | 362 |
| EcoT14I | CCWWGG | 2 cut(s) | 59, 713 |
| ErhI | CCWWGG | 2 cut(s) | 59, 713 |
| FaeI | CATG | 3 cut(s) | 79, 641, 880 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 890, 922 |
| FatI | CATG | 3 cut(s) | 75, 637, 876 |
| FblI | GTMKAC | 2 cut(s) | 554, 572 |
| Fnu4HI | GCNGC | 5 cut(s) | 339, 477, 480, 483, 800 |
| FokI | GGATG | 1 cut(s) | 244 |
| Fsp4HI | GCNGC | 5 cut(s) | 339, 477, 480, 483, 800 |
| FspBI | CTAG | 4 cut(s) | 35, 122, 459, 714 |
| GluI | GCNGC | 5 cut(s) | 339, 477, 480, 483, 800 |
| GsaI | CCCAGC | 1 cut(s) | 423 |
| HapII | CCGG | 1 cut(s) | 852 |
| HgaI | GACGC | 1 cut(s) | 284 |
| Hin1II | CATG | 3 cut(s) | 79, 641, 880 |
| HinfI | GANTC | 4 cut(s) | 39, 490, 732, 763 |
| HpaII | CCGG | 1 cut(s) | 852 |
| HphI | GGTGA | 1 cut(s) | 34 |
| Hpy166II | GTNNAC | 2 cut(s) | 555, 573 |
| Hpy188I | TCNGA | 4 cut(s) | 115, 289, 501, 661 |
| Hpy188III | TCNNGA | 2 cut(s) | 389, 1019 |
| Hpy8I | GTNNAC | 2 cut(s) | 555, 573 |
| HpyAV | CCTTC | 3 cut(s) | 640, 740, 904 |
| HpyCH4III | ACNGT | 2 cut(s) | 612, 864 |
| HpyCH4IV | ACGT | 6 cut(s) | 91, 157, 472, 557, 979, 1039 |
| HpyCH4V | TGCA | 8 cut(s) | 230, 238, 320, 338, 485, 823, 889, 919 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 482 |
| HpyF3I | CTNAG | 5 cut(s) | 189, 288, 658, 774, 955 |
| HpySE526I | ACGT | 6 cut(s) | 91, 157, 472, 557, 979, 1039 |
| Hsp92II | CATG | 3 cut(s) | 79, 641, 880 |
| KroI | GCCGGC | 1 cut(s) | 851 |
| KroNI | GCCGGC | 1 cut(s) | 853 |
| Kzo9I | GATC | 5 cut(s) | 147, 232, 510, 619, 667 |
| LmnI | GCTCC | 1 cut(s) | 247 |
| Lsp1109I | GCAGC | 5 cut(s) | 350, 463, 466, 469, 786 |
| LweI | GCATC | 1 cut(s) | 832 |
| MabI | ACCWGGT | 1 cut(s) | 362 |
| MaeI | CTAG | 4 cut(s) | 35, 122, 459, 714 |
| MaeII | ACGT | 6 cut(s) | 91, 157, 472, 557, 979, 1039 |
| MaeIII | GTNAC | 1 cut(s) | 864 |
| MalI | GATC | 5 cut(s) | 149, 234, 512, 621, 669 |
| MboI | GATC | 5 cut(s) | 147, 232, 510, 619, 667 |
| MboII | GAAGA | 4 cut(s) | 755, 934, 983, 1007 |
| MfeI | CAATTG | 1 cut(s) | 1004 |
| MflI | RGATCY | 2 cut(s) | 232, 619 |
| MluCI | AATT | 7 cut(s) | 28, 138, 372, 828, 840, 926, 1004 |
| MnlI | CCTC | 6 cut(s) | 105, 338, 667, 687, 907, 1026 |
| MroNI | GCCGGC | 1 cut(s) | 851 |
| MseI | TTAA | 4 cut(s) | 371, 429, 1044, 1060 |
| MslI | CAYNNNNRTG | 2 cut(s) | 406, 610 |
| MspI | CCGG | 1 cut(s) | 852 |
| MspR9I | CCNGG | 1 cut(s) | 364 |
| MunI | CAATTG | 1 cut(s) | 1004 |
| MvaI | CCWGG | 1 cut(s) | 364 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 482 |
| NaeI | GCCGGC | 1 cut(s) | 853 |
| NdeII | GATC | 5 cut(s) | 147, 232, 510, 619, 667 |
| NgoMIV | GCCGGC | 1 cut(s) | 851 |
| NlaIII | CATG | 3 cut(s) | 79, 641, 880 |
| NlaIV | GGNNCC | 3 cut(s) | 300, 815, 835 |
| NspV | TTCGAA | 1 cut(s) | 352 |
| PdiI | GCCGGC | 1 cut(s) | 853 |
| PfeI | GAWTC | 4 cut(s) | 39, 490, 732, 763 |
| PkrI | GCNGC | 5 cut(s) | 340, 478, 481, 484, 801 |
| PmaCI | CACGTG | 1 cut(s) | 473 |
| PmlI | CACGTG | 1 cut(s) | 473 |
| Ppu21I | YACGTR | 3 cut(s) | 158, 473, 558 |
| Psp1406I | AACGTT | 1 cut(s) | 1039 |
| Psp6I | CCWGG | 1 cut(s) | 362 |
| PspCI | CACGTG | 1 cut(s) | 473 |
| PspFI | CCCAGC | 1 cut(s) | 419 |
| PspGI | CCWGG | 1 cut(s) | 362 |
| PspN4I | GGNNCC | 3 cut(s) | 300, 815, 835 |
| PsuI | RGATCY | 2 cut(s) | 232, 619 |
| RsaI | GTAC | 3 cut(s) | 468, 772, 953 |
| RsaNI | GTAC | 3 cut(s) | 467, 771, 952 |
| RseI | CAYNNNNRTG | 2 cut(s) | 406, 610 |
| SaqAI | TTAA | 4 cut(s) | 371, 429, 1044, 1060 |
| SatI | GCNGC | 5 cut(s) | 339, 477, 480, 483, 800 |
| Sau3AI | GATC | 5 cut(s) | 147, 232, 510, 619, 667 |
| ScrFI | CCNGG | 1 cut(s) | 364 |
| SexAI | ACCWGGT | 1 cut(s) | 362 |
| SfaNI | GCATC | 1 cut(s) | 832 |
| SfuI | TTCGAA | 1 cut(s) | 352 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 406, 610 |
| Sse9I | AATT | 7 cut(s) | 28, 138, 372, 828, 840, 926, 1004 |
| SspI | AATATT | 1 cut(s) | 1028 |
| SspMI | CTAG | 4 cut(s) | 35, 122, 459, 714 |
| StyD4I | CCNGG | 1 cut(s) | 362 |
| StyI | CCWWGG | 2 cut(s) | 59, 713 |
| TaaI | ACNGT | 2 cut(s) | 612, 864 |
| TaiI | ACGT | 6 cut(s) | 94, 160, 475, 560, 982, 1042 |
| TaqI | TCGA | 3 cut(s) | 352, 513, 666 |
| TasI | AATT | 7 cut(s) | 28, 138, 372, 828, 840, 926, 1004 |
| TatI | WGTACW | 1 cut(s) | 770 |
| TfiI | GAWTC | 4 cut(s) | 39, 490, 732, 763 |
| Tru1I | TTAA | 4 cut(s) | 371, 429, 1044, 1060 |
| Tru9I | TTAA | 4 cut(s) | 371, 429, 1044, 1060 |
| TscAI | CASTG | 2 cut(s) | 617, 654 |
| TseI | GCWGC | 5 cut(s) | 338, 476, 479, 482, 799 |
| TspDTI | ATGAA | 6 cut(s) | 243, 254, 447, 503, 956, 984 |
| TspRI | CASTG | 2 cut(s) | 617, 654 |
| XapI | RAATTY | 1 cut(s) | 840 |
| XmaJI | CCTAGG | 1 cut(s) | 713 |
| XmiI | GTMKAC | 2 cut(s) | 554, 572 |
| XspI | CTAG | 4 cut(s) | 35, 122, 459, 714 |