ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 396 |
| AatII | GACGTC | 1 cut(s) | 279 |
| Acc36I | ACCTGC | 1 cut(s) | 648 |
| AccB1I | GGYRCC | 1 cut(s) | 305 |
| AciI | CCGC | 3 cut(s) | 344, 707, 813 |
| AcsI | RAATTY | 2 cut(s) | 367, 601 |
| AcuI | CTGAAG | 1 cut(s) | 321 |
| AcyI | GRCGYC | 1 cut(s) | 276 |
| AfaI | GTAC | 1 cut(s) | 81 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 442, 613, 633 |
| AgsI | TTSAA | 2 cut(s) | 500, 740 |
| AjnI | CCWGG | 1 cut(s) | 404 |
| AluBI | AGCT | 3 cut(s) | 386, 503, 619 |
| AluI | AGCT | 3 cut(s) | 386, 503, 619 |
| Alw26I | GTCTC | 1 cut(s) | 251 |
| Ama87I | CYCGRG | 2 cut(s) | 189, 633 |
| AoxI | GGCC | 3 cut(s) | 37, 701, 807 |
| ApeKI | GCWGC | 3 cut(s) | 4, 709, 815 |
| ApoI | RAATTY | 2 cut(s) | 367, 601 |
| AseI | ATTAAT | 1 cut(s) | 771 |
| AspLEI | GCGC | 1 cut(s) | 130 |
| AspS9I | GGNCC | 3 cut(s) | 461, 586, 660 |
| AsuHPI | GGTGA | 2 cut(s) | 177, 634 |
| AvaI | CYCGRG | 2 cut(s) | 189, 633 |
| AvaII | GGWCC | 3 cut(s) | 461, 586, 660 |
| BanI | GGYRCC | 1 cut(s) | 305 |
| BbsI | GAAGAC | 1 cut(s) | 392 |
| BbvI | GCAGC | 3 cut(s) | 16, 696, 802 |
| BccI | CCATC | 1 cut(s) | 164 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 269, 303 |
| BciT130I | CCWGG | 1 cut(s) | 406 |
| BcoDI | GTCTC | 1 cut(s) | 251 |
| BfaI | CTAG | 7 cut(s) | 68, 122, 383, 410, 695, 723, 829 |
| BfmI | CTRYAG | 1 cut(s) | 291 |
| BfuAI | ACCTGC | 1 cut(s) | 648 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 344 |
| BisI | GCNGC | 4 cut(s) | 5, 345, 710, 816 |
| BlsI | GCNGC | 4 cut(s) | 6, 346, 711, 817 |
| Bme1390I | CCNGG | 1 cut(s) | 406 |
| Bme18I | GGWCC | 3 cut(s) | 461, 586, 660 |
| BmeT110I | CYCGRG | 2 cut(s) | 189, 633 |
| BmgT120I | GGNCC | 3 cut(s) | 461, 586, 660 |
| BmiI | GGNNCC | 2 cut(s) | 237, 307 |
| BmrFI | CCNGG | 1 cut(s) | 406 |
| BmsI | GCATC | 1 cut(s) | 52 |
| BoxI | GACNNNNGTC | 2 cut(s) | 201, 669 |
| BpiI | GAAGAC | 1 cut(s) | 392 |
| BpmI | CTGGAG | 2 cut(s) | 233, 438 |
| BsaHI | GRCGYC | 1 cut(s) | 276 |
| BsaJI | CCNNGG | 1 cut(s) | 404 |
| BsaWI | WCCGGW | 2 cut(s) | 238, 455 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 442, 613, 633 |
| BseBI | CCWGG | 1 cut(s) | 406 |
| BseDI | CCNNGG | 1 cut(s) | 404 |
| BseGI | GGATG | 2 cut(s) | 67, 798 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 442, 613, 633 |
| BseMII | CTCAG | 2 cut(s) | 71, 644 |
| BseXI | GCAGC | 3 cut(s) | 16, 696, 802 |
| BsgI | GTGCAG | 2 cut(s) | 695, 801 |
| BshFI | GGCC | 3 cut(s) | 39, 703, 809 |
| BshNI | GGYRCC | 1 cut(s) | 305 |
| BsiHKCI | CYCGRG | 2 cut(s) | 189, 633 |
| BsiSI | CCGG | 2 cut(s) | 239, 456 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 442, 613, 633 |
| BsmAI | GTCTC | 1 cut(s) | 251 |
| BsmBI | CGTCTC | 1 cut(s) | 251 |
| BsnI | GGCC | 3 cut(s) | 39, 703, 809 |
| BsoBI | CYCGRG | 2 cut(s) | 189, 633 |
| Bsp143I | GATC | 2 cut(s) | 133, 822 |
| BspACI | CCGC | 3 cut(s) | 344, 707, 813 |
| BspANI | GGCC | 3 cut(s) | 39, 703, 809 |
| BspCNI | CTCAG | 2 cut(s) | 70, 645 |
| BspLI | GGNNCC | 2 cut(s) | 237, 307 |
| BspMI | ACCTGC | 1 cut(s) | 648 |
| BspT107I | GGYRCC | 1 cut(s) | 305 |
| BssECI | CCNNGG | 1 cut(s) | 404 |
| BssMI | GATC | 2 cut(s) | 133, 822 |
| BssNI | GRCGYC | 1 cut(s) | 276 |
| Bst2UI | CCWGG | 1 cut(s) | 406 |
| Bst4CI | ACNGT | 1 cut(s) | 671 |
| Bst6I | CTCTTC | 1 cut(s) | 681 |
| BstACI | GRCGYC | 1 cut(s) | 276 |
| BstDEI | CTNAG | 2 cut(s) | 57, 653 |
| BstF5I | GGATG | 2 cut(s) | 67, 798 |
| BstHHI | GCGC | 1 cut(s) | 130 |
| BstKTI | GATC | 2 cut(s) | 136, 825 |
| BstMAI | GTCTC | 1 cut(s) | 251 |
| BstMBI | GATC | 2 cut(s) | 133, 822 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 136, 344, 709, 815 |
| BstNI | CCWGG | 1 cut(s) | 406 |
| BstPAI | GACNNNNGTC | 2 cut(s) | 201, 669 |
| BstSCI | CCNGG | 1 cut(s) | 404 |
| BstSFI | CTRYAG | 1 cut(s) | 291 |
| BstV1I | GCAGC | 3 cut(s) | 16, 696, 802 |
| BstV2I | GAAGAC | 1 cut(s) | 392 |
| BsuRI | GGCC | 3 cut(s) | 39, 703, 809 |
| BtsCI | GGATG | 2 cut(s) | 67, 798 |
| BtsIMutI | CAGTG | 1 cut(s) | 667 |
| BveI | ACCTGC | 1 cut(s) | 648 |
| CfoI | GCGC | 1 cut(s) | 130 |
| Cfr13I | GGNCC | 3 cut(s) | 461, 586, 660 |
| CseI | GACGC | 1 cut(s) | 233 |
| Csp6I | GTAC | 1 cut(s) | 80 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 439, 474 |
| CviAII | CATG | 1 cut(s) | 590 |
| CviQI | GTAC | 1 cut(s) | 80 |
| DdeI | CTNAG | 2 cut(s) | 57, 653 |
| DpnI | GATC | 2 cut(s) | 135, 824 |
| DpnII | GATC | 2 cut(s) | 133, 822 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 396 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 396 |
| Eam1104I | CTCTTC | 1 cut(s) | 681 |
| EarI | CTCTTC | 1 cut(s) | 681 |
| Eco147I | AGGCCT | 3 cut(s) | 39, 703, 809 |
| Eco47I | GGWCC | 3 cut(s) | 461, 586, 660 |
| Eco57I | CTGAAG | 1 cut(s) | 321 |
| Eco88I | CYCGRG | 2 cut(s) | 189, 633 |
| EcoRII | CCWGG | 1 cut(s) | 404 |
| Esp3I | CGTCTC | 1 cut(s) | 251 |
| FaeI | CATG | 1 cut(s) | 593 |
| FaiI | YATR | 7 cut(s) | 270, 328, 330, 530, 552, 591, 683 |
| FatI | CATG | 1 cut(s) | 589 |
| Fnu4HI | GCNGC | 4 cut(s) | 5, 345, 710, 816 |
| FokI | GGATG | 2 cut(s) | 74, 805 |
| Fsp4HI | GCNGC | 4 cut(s) | 5, 345, 710, 816 |
| FspBI | CTAG | 7 cut(s) | 68, 122, 383, 410, 695, 723, 829 |
| GlaI | GCGC | 1 cut(s) | 129 |
| GluI | GCNGC | 4 cut(s) | 5, 345, 710, 816 |
| GsuI | CTGGAG | 2 cut(s) | 233, 438 |
| HaeIII | GGCC | 3 cut(s) | 39, 703, 809 |
| HapII | CCGG | 2 cut(s) | 239, 456 |
| HgaI | GACGC | 1 cut(s) | 233 |
| HhaI | GCGC | 1 cut(s) | 130 |
| Hin1I | GRCGYC | 1 cut(s) | 276 |
| Hin1II | CATG | 1 cut(s) | 593 |
| Hin6I | GCGC | 1 cut(s) | 128 |
| HinP1I | GCGC | 1 cut(s) | 128 |
| HindIII | AAGCTT | 1 cut(s) | 501 |
| HinfI | GANTC | 5 cut(s) | 16, 91, 174, 315, 394 |
| HpaII | CCGG | 2 cut(s) | 239, 456 |
| HphI | GGTGA | 2 cut(s) | 177, 634 |
| Hpy166II | GTNNAC | 2 cut(s) | 464, 570 |
| Hpy188I | TCNGA | 8 cut(s) | 115, 301, 354, 600, 654, 664, 763, 783 |
| Hpy188III | TCNNGA | 4 cut(s) | 59, 191, 250, 695 |
| Hpy8I | GTNNAC | 2 cut(s) | 464, 570 |
| Hpy99I | CGWCG | 2 cut(s) | 278, 281 |
| HpyAV | CCTTC | 2 cut(s) | 296, 778 |
| HpyCH4III | ACNGT | 1 cut(s) | 671 |
| HpyCH4IV | ACGT | 2 cut(s) | 276, 727 |
| HpyCH4V | TGCA | 5 cut(s) | 4, 263, 712, 768, 818 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 136, 344, 709, 815 |
| HpyF3I | CTNAG | 2 cut(s) | 57, 653 |
| HpySE526I | ACGT | 2 cut(s) | 276, 727 |
| Hsp92I | GRCGYC | 1 cut(s) | 276 |
| Hsp92II | CATG | 1 cut(s) | 593 |
| HspAI | GCGC | 1 cut(s) | 128 |
| Kzo9I | GATC | 2 cut(s) | 133, 822 |
| LmnI | GCTCC | 1 cut(s) | 616 |
| Lsp1109I | GCAGC | 3 cut(s) | 16, 696, 802 |
| LweI | GCATC | 1 cut(s) | 52 |
| MaeI | CTAG | 7 cut(s) | 68, 122, 383, 410, 695, 723, 829 |
| MaeII | ACGT | 2 cut(s) | 276, 727 |
| MaeIII | GTNAC | 2 cut(s) | 227, 750 |
| MalI | GATC | 2 cut(s) | 135, 824 |
| MboI | GATC | 2 cut(s) | 133, 822 |
| MboII | GAAGA | 4 cut(s) | 392, 488, 668, 752 |
| MluCI | AATT | 3 cut(s) | 28, 367, 601 |
| MlyI | GAGTC | 1 cut(s) | 183 |
| MmeI | TCCRAC | 2 cut(s) | 687, 770 |
| MseI | TTAA | 5 cut(s) | 12, 426, 521, 690, 771 |
| MspA1I | CMGCKG | 3 cut(s) | 344, 709, 815 |
| MspI | CCGG | 2 cut(s) | 239, 456 |
| MspR9I | CCNGG | 1 cut(s) | 406 |
| MvaI | CCWGG | 1 cut(s) | 406 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 136, 344, 709, 815 |
| NdeII | GATC | 2 cut(s) | 133, 822 |
| NlaIII | CATG | 1 cut(s) | 593 |
| NlaIV | GGNNCC | 2 cut(s) | 237, 307 |
| PaeR7I | CTCGAG | 1 cut(s) | 189 |
| PceI | AGGCCT | 3 cut(s) | 39, 703, 809 |
| PfeI | GAWTC | 4 cut(s) | 16, 91, 315, 394 |
| PkrI | GCNGC | 4 cut(s) | 6, 346, 711, 817 |
| PleI | GAGTC | 1 cut(s) | 182 |
| PpsI | GAGTC | 1 cut(s) | 182 |
| PshAI | GACNNNNGTC | 2 cut(s) | 201, 669 |
| PshBI | ATTAAT | 1 cut(s) | 771 |
| Psp6I | CCWGG | 1 cut(s) | 404 |
| PspGI | CCWGG | 1 cut(s) | 404 |
| PspN4I | GGNNCC | 2 cut(s) | 237, 307 |
| PspPI | GGNCC | 3 cut(s) | 461, 586, 660 |
| RsaI | GTAC | 1 cut(s) | 81 |
| RsaNI | GTAC | 1 cut(s) | 80 |
| SaqAI | TTAA | 5 cut(s) | 12, 426, 521, 690, 771 |
| SatI | GCNGC | 4 cut(s) | 5, 345, 710, 816 |
| Sau3AI | GATC | 2 cut(s) | 133, 822 |
| Sau96I | GGNCC | 3 cut(s) | 461, 586, 660 |
| SchI | GAGTC | 1 cut(s) | 183 |
| ScrFI | CCNGG | 1 cut(s) | 406 |
| SfaNI | GCATC | 1 cut(s) | 52 |
| SfcI | CTRYAG | 1 cut(s) | 291 |
| Sfr274I | CTCGAG | 1 cut(s) | 189 |
| SinI | GGWCC | 3 cut(s) | 461, 586, 660 |
| SlaI | CTCGAG | 1 cut(s) | 189 |
| SmlI | CTYRAG | 1 cut(s) | 189 |
| SmoI | CTYRAG | 1 cut(s) | 189 |
| Sse9I | AATT | 3 cut(s) | 28, 367, 601 |
| SseBI | AGGCCT | 3 cut(s) | 39, 703, 809 |
| SsiI | CCGC | 3 cut(s) | 344, 707, 813 |
| SspI | AATATT | 1 cut(s) | 76 |
| SspMI | CTAG | 7 cut(s) | 68, 122, 383, 410, 695, 723, 829 |
| StuI | AGGCCT | 3 cut(s) | 39, 703, 809 |
| StyD4I | CCNGG | 1 cut(s) | 404 |
| TaaI | ACNGT | 1 cut(s) | 671 |
| TaiI | ACGT | 2 cut(s) | 279, 730 |
| TaqI | TCGA | 5 cut(s) | 34, 190, 273, 279, 313 |
| TasI | AATT | 3 cut(s) | 28, 367, 601 |
| TauI | GCSGC | 1 cut(s) | 347 |
| TfiI | GAWTC | 4 cut(s) | 16, 91, 315, 394 |
| Tru1I | TTAA | 5 cut(s) | 12, 426, 521, 690, 771 |
| Tru9I | TTAA | 5 cut(s) | 12, 426, 521, 690, 771 |
| TscAI | CASTG | 1 cut(s) | 674 |
| TseI | GCWGC | 3 cut(s) | 4, 709, 815 |
| TspDTI | ATGAA | 2 cut(s) | 66, 444 |
| TspRI | CASTG | 1 cut(s) | 674 |
| VpaK11BI | GGWCC | 3 cut(s) | 461, 586, 660 |
| VspI | ATTAAT | 1 cut(s) | 771 |
| XapI | RAATTY | 2 cut(s) | 367, 601 |
| XbaI | TCTAGA | 1 cut(s) | 694 |
| XhoI | CTCGAG | 1 cut(s) | 189 |
| XspI | CTAG | 7 cut(s) | 68, 122, 383, 410, 695, 723, 829 |
| ZraI | GACGTC | 1 cut(s) | 277 |