Ribonuclease H protein
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 1 cut(s) | 95 |
| AcoI | YGGCCR | 1 cut(s) | 96 |
| AfaI | GTAC | 2 cut(s) | 154, 160 |
| AgsI | TTSAA | 2 cut(s) | 126, 302 |
| AluBI | AGCT | 1 cut(s) | 62 |
| AluI | AGCT | 1 cut(s) | 62 |
| Ama87I | CYCGRG | 1 cut(s) | 192 |
| AoxI | GGCC | 2 cut(s) | 96, 258 |
| ApaI | GGGCCC | 1 cut(s) | 262 |
| AseI | ATTAAT | 1 cut(s) | 267 |
| AspS9I | GGNCC | 3 cut(s) | 223, 258, 259 |
| AsuC2I | CCSGG | 2 cut(s) | 193, 194 |
| AsuHPI | GGTGA | 1 cut(s) | 208 |
| AvaI | CYCGRG | 1 cut(s) | 192 |
| AvaII | GGWCC | 1 cut(s) | 223 |
| BaeGI | GKGCMC | 1 cut(s) | 262 |
| BanII | GRGCYC | 1 cut(s) | 262 |
| BbsI | GAAGAC | 1 cut(s) | 197 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 35, 69 |
| BcnI | CCSGG | 2 cut(s) | 193, 194 |
| BfaI | CTAG | 1 cut(s) | 213 |
| BisI | GCNGC | 1 cut(s) | 96 |
| BlsI | GCNGC | 1 cut(s) | 97 |
| Bme1390I | CCNGG | 2 cut(s) | 193, 194 |
| Bme18I | GGWCC | 1 cut(s) | 223 |
| BmeT110I | CYCGRG | 1 cut(s) | 192 |
| BmgT120I | GGNCC | 3 cut(s) | 223, 258, 259 |
| BmiI | GGNNCC | 2 cut(s) | 259, 260 |
| BmrFI | CCNGG | 2 cut(s) | 193, 194 |
| BmsI | GCATC | 1 cut(s) | 33 |
| BpiI | GAAGAC | 1 cut(s) | 197 |
| BpuMI | CCSGG | 2 cut(s) | 193, 194 |
| BsaJI | CCNNGG | 1 cut(s) | 192 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 145, 175 |
| Bse1I | ACTGG | 1 cut(s) | 147 |
| BseDI | CCNNGG | 1 cut(s) | 192 |
| BseGI | GGATG | 1 cut(s) | 208 |
| BseMII | CTCAG | 1 cut(s) | 53 |
| BseNI | ACTGG | 1 cut(s) | 147 |
| BseRI | GAGGAG | 1 cut(s) | 227 |
| BseSI | GKGCMC | 1 cut(s) | 262 |
| BseX3I | CGGCCG | 1 cut(s) | 96 |
| Bsh1285I | CGRYCG | 2 cut(s) | 99, 221 |
| BshFI | GGCC | 2 cut(s) | 98, 260 |
| BsiEI | CGRYCG | 2 cut(s) | 99, 221 |
| BsiHKCI | CYCGRG | 1 cut(s) | 192 |
| BsiSI | CCGG | 2 cut(s) | 99, 193 |
| BslFI | GGGAC | 1 cut(s) | 215 |
| BsmFI | GGGAC | 1 cut(s) | 215 |
| BsnI | GGCC | 2 cut(s) | 98, 260 |
| BsoBI | CYCGRG | 1 cut(s) | 192 |
| Bsp120I | GGGCCC | 1 cut(s) | 258 |
| Bsp1286I | GDGCHC | 1 cut(s) | 262 |
| Bsp143I | GATC | 1 cut(s) | 218 |
| BspACI | CCGC | 1 cut(s) | 95 |
| BspANI | GGCC | 2 cut(s) | 98, 260 |
| BspCNI | CTCAG | 1 cut(s) | 52 |
| BspLI | GGNNCC | 2 cut(s) | 259, 260 |
| BsrI | ACTGG | 1 cut(s) | 147 |
| BssECI | CCNNGG | 1 cut(s) | 192 |
| BssMI | GATC | 1 cut(s) | 218 |
| BstC8I | GCNNGC | 1 cut(s) | 48 |
| BstDEI | CTNAG | 1 cut(s) | 39 |
| BstF5I | GGATG | 1 cut(s) | 208 |
| BstKTI | GATC | 1 cut(s) | 221 |
| BstMBI | GATC | 1 cut(s) | 218 |
| BstMCI | CGRYCG | 2 cut(s) | 99, 221 |
| BstSCI | CCNGG | 2 cut(s) | 191, 192 |
| BstSLI | GKGCMC | 1 cut(s) | 262 |
| BstV2I | GAAGAC | 1 cut(s) | 197 |
| BstZI | CGGCCG | 1 cut(s) | 96 |
| BsuRI | GGCC | 2 cut(s) | 98, 260 |
| BtsCI | GGATG | 1 cut(s) | 208 |
| Cac8I | GCNNGC | 1 cut(s) | 48 |
| Cfr13I | GGNCC | 3 cut(s) | 223, 258, 259 |
| Cfr9I | CCCGGG | 1 cut(s) | 192 |
| Csp6I | GTAC | 2 cut(s) | 153, 159 |
| CviAII | CATG | 3 cut(s) | 114, 148, 227 |
| CviJI | RGCY | 6 cut(s) | 62, 98, 186, 252, 260, 274 |
| CviKI_1 | RGCY | 6 cut(s) | 62, 98, 186, 252, 260, 274 |
| CviQI | GTAC | 2 cut(s) | 153, 159 |
| DdeI | CTNAG | 1 cut(s) | 39 |
| DpnI | GATC | 1 cut(s) | 220 |
| DpnII | GATC | 1 cut(s) | 218 |
| EaeI | YGGCCR | 1 cut(s) | 96 |
| EagI | CGGCCG | 1 cut(s) | 96 |
| EclXI | CGGCCG | 1 cut(s) | 96 |
| Eco24I | GRGCYC | 1 cut(s) | 262 |
| Eco47I | GGWCC | 1 cut(s) | 223 |
| Eco52I | CGGCCG | 1 cut(s) | 96 |
| Eco88I | CYCGRG | 1 cut(s) | 192 |
| EcoO109I | RGGNCCY | 2 cut(s) | 258, 259 |
| EcoT38I | GRGCYC | 1 cut(s) | 262 |
| FaeI | CATG | 3 cut(s) | 117, 151, 230 |
| FaiI | YATR | 6 cut(s) | 89, 115, 149, 228, 255, 279 |
| FaqI | GGGAC | 1 cut(s) | 215 |
| FatI | CATG | 3 cut(s) | 113, 147, 226 |
| Fnu4HI | GCNGC | 1 cut(s) | 96 |
| FokI | GGATG | 1 cut(s) | 195 |
| FriOI | GRGCYC | 1 cut(s) | 262 |
| Fsp4HI | GCNGC | 1 cut(s) | 96 |
| FspBI | CTAG | 1 cut(s) | 213 |
| GluI | GCNGC | 1 cut(s) | 96 |
| HaeIII | GGCC | 2 cut(s) | 98, 260 |
| HapII | CCGG | 2 cut(s) | 99, 193 |
| Hin1II | CATG | 3 cut(s) | 117, 151, 230 |
| HindIII | AAGCTT | 1 cut(s) | 60 |
| HinfI | GANTC | 1 cut(s) | 122 |
| HpaII | CCGG | 2 cut(s) | 99, 193 |
| HphI | GGTGA | 1 cut(s) | 208 |
| Hpy166II | GTNNAC | 1 cut(s) | 111 |
| Hpy188I | TCNGA | 4 cut(s) | 42, 70, 178, 223 |
| Hpy188III | TCNNGA | 2 cut(s) | 56, 299 |
| Hpy8I | GTNNAC | 1 cut(s) | 111 |
| HpyCH4V | TGCA | 1 cut(s) | 46 |
| HpyF3I | CTNAG | 1 cut(s) | 39 |
| Hsp92II | CATG | 3 cut(s) | 117, 151, 230 |
| Kzo9I | GATC | 1 cut(s) | 218 |
| LpnPI | CCDG | 5 cut(s) | 112, 128, 177, 206, 275 |
| LweI | GCATC | 1 cut(s) | 33 |
| MaeI | CTAG | 1 cut(s) | 213 |
| MalI | GATC | 1 cut(s) | 220 |
| MboI | GATC | 1 cut(s) | 218 |
| MboII | GAAGA | 1 cut(s) | 197 |
| MhlI | GDGCHC | 1 cut(s) | 262 |
| MluCI | AATT | 1 cut(s) | 76 |
| MmeI | TCCRAC | 1 cut(s) | 48 |
| MnlI | CCTC | 3 cut(s) | 95, 243, 248 |
| MseI | TTAA | 1 cut(s) | 267 |
| MslI | CAYNNNNRTG | 1 cut(s) | 41 |
| MspI | CCGG | 2 cut(s) | 99, 193 |
| MspR9I | CCNGG | 2 cut(s) | 193, 194 |
| NciI | CCSGG | 2 cut(s) | 193, 194 |
| NdeII | GATC | 1 cut(s) | 218 |
| NlaIII | CATG | 3 cut(s) | 117, 151, 230 |
| NlaIV | GGNNCC | 2 cut(s) | 259, 260 |
| PfeI | GAWTC | 1 cut(s) | 122 |
| PflFI | GACNNNGTC | 1 cut(s) | 227 |
| PkrI | GCNGC | 1 cut(s) | 97 |
| Ple19I | CGATCG | 1 cut(s) | 221 |
| PshBI | ATTAAT | 1 cut(s) | 267 |
| PspN4I | GGNNCC | 2 cut(s) | 259, 260 |
| PspOMI | GGGCCC | 1 cut(s) | 258 |
| PspPI | GGNCC | 3 cut(s) | 223, 258, 259 |
| PsyI | GACNNNGTC | 1 cut(s) | 227 |
| PvuI | CGATCG | 1 cut(s) | 221 |
| RsaI | GTAC | 2 cut(s) | 154, 160 |
| RsaNI | GTAC | 2 cut(s) | 153, 159 |
| RseI | CAYNNNNRTG | 1 cut(s) | 41 |
| SaqAI | TTAA | 1 cut(s) | 267 |
| SatI | GCNGC | 1 cut(s) | 96 |
| Sau3AI | GATC | 1 cut(s) | 218 |
| Sau96I | GGNCC | 3 cut(s) | 223, 258, 259 |
| ScrFI | CCNGG | 2 cut(s) | 193, 194 |
| SduI | GDGCHC | 1 cut(s) | 262 |
| SetI | ASST | 2 cut(s) | 19, 64 |
| SfaNI | GCATC | 1 cut(s) | 33 |
| SinI | GGWCC | 1 cut(s) | 223 |
| SmaI | CCCGGG | 1 cut(s) | 194 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 41 |
| Sse9I | AATT | 1 cut(s) | 76 |
| SsiI | CCGC | 1 cut(s) | 95 |
| SspMI | CTAG | 1 cut(s) | 213 |
| StyD4I | CCNGG | 2 cut(s) | 191, 192 |
| TaqI | TCGA | 1 cut(s) | 217 |
| TasI | AATT | 1 cut(s) | 76 |
| TatI | WGTACW | 1 cut(s) | 158 |
| TauI | GCSGC | 1 cut(s) | 98 |
| TfiI | GAWTC | 1 cut(s) | 122 |
| Tru1I | TTAA | 1 cut(s) | 267 |
| Tru9I | TTAA | 1 cut(s) | 267 |
| TspDTI | ATGAA | 1 cut(s) | 197 |
| TspMI | CCCGGG | 1 cut(s) | 192 |
| Tth111I | GACNNNGTC | 1 cut(s) | 227 |
| VpaK11BI | GGWCC | 1 cut(s) | 223 |
| VspI | ATTAAT | 1 cut(s) | 267 |
| XmaI | CCCGGG | 1 cut(s) | 192 |
| XspI | CTAG | 1 cut(s) | 213 |