Ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Aminotran_1_2 | PF00155 | 89 - 441 | 5.6e-48 | Aminotransferase class I and II |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 2 cut(s) | 20, 137 |
| Acc36I | ACCTGC | 1 cut(s) | 911 |
| AccB1I | GGYRCC | 1 cut(s) | 1240 |
| AciI | CCGC | 5 cut(s) | 341, 428, 837, 933, 1031 |
| AclI | AACGTT | 1 cut(s) | 200 |
| AcsI | RAATTY | 4 cut(s) | 257, 866, 1122, 1336 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 233, 234, 320 |
| AflII | CTTAAG | 1 cut(s) | 674 |
| AgsI | TTSAA | 5 cut(s) | 47, 436, 1002, 1180, 1201 |
| AjnI | CCWGG | 1 cut(s) | 8 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1069, 1101 |
| AluBI | AGCT | 6 cut(s) | 6, 157, 268, 729, 769, 778 |
| AluI | AGCT | 6 cut(s) | 6, 157, 268, 729, 769, 778 |
| Alw21I | GWGCWC | 2 cut(s) | 8, 1114 |
| Alw26I | GTCTC | 2 cut(s) | 72, 741 |
| AoxI | GGCC | 3 cut(s) | 361, 486, 1032 |
| ApaI | GGGCCC | 1 cut(s) | 365 |
| ApoI | RAATTY | 4 cut(s) | 257, 866, 1122, 1336 |
| AspS9I | GGNCC | 5 cut(s) | 163, 181, 361, 362, 1033 |
| AsuC2I | CCSGG | 2 cut(s) | 235, 253 |
| AsuHPI | GGTGA | 2 cut(s) | 662, 784 |
| AsuII | TTCGAA | 1 cut(s) | 88 |
| AvaII | GGWCC | 2 cut(s) | 163, 181 |
| BaeGI | GKGCMC | 1 cut(s) | 365 |
| BanI | GGYRCC | 1 cut(s) | 1240 |
| BanII | GRGCYC | 3 cut(s) | 8, 365, 374 |
| BauI | CACGAG | 1 cut(s) | 978 |
| BbsI | GAAGAC | 2 cut(s) | 129, 133 |
| Bbv12I | GWGCWC | 2 cut(s) | 8, 1114 |
| BbvCI | CCTCAGC | 1 cut(s) | 861 |
| BccI | CCATC | 5 cut(s) | 86, 487, 596, 737, 951 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1088, 1122 |
| BciT130I | CCWGG | 1 cut(s) | 10 |
| BciVI | GTATCC | 1 cut(s) | 241 |
| BcnI | CCSGG | 2 cut(s) | 235, 253 |
| BcoDI | GTCTC | 2 cut(s) | 72, 741 |
| BfmI | CTRYAG | 4 cut(s) | 465, 633, 649, 918 |
| BfrI | CTTAAG | 1 cut(s) | 674 |
| BfuAI | ACCTGC | 1 cut(s) | 911 |
| BfuI | GTATCC | 1 cut(s) | 241 |
| BglI | GCCNNNNNGGC | 2 cut(s) | 369, 485 |
| Bme1390I | CCNGG | 3 cut(s) | 10, 235, 253 |
| Bme18I | GGWCC | 2 cut(s) | 163, 181 |
| BmgT120I | GGNCC | 5 cut(s) | 163, 181, 361, 362, 1033 |
| BmiI | GGNNCC | 5 cut(s) | 164, 363, 826, 1242, 1363 |
| BmrFI | CCNGG | 3 cut(s) | 10, 235, 253 |
| BmrI | ACTGGG | 2 cut(s) | 28, 222 |
| BmsI | GCATC | 2 cut(s) | 805, 1362 |
| BmuI | ACTGGG | 2 cut(s) | 28, 222 |
| BoxI | GACNNNNGTC | 1 cut(s) | 415 |
| BpiI | GAAGAC | 2 cut(s) | 129, 133 |
| BpmI | CTGGAG | 1 cut(s) | 434 |
| Bpu10I | CCTNAGC | 3 cut(s) | 336, 424, 861 |
| Bpu14I | TTCGAA | 1 cut(s) | 88 |
| BpuEI | CTTGAG | 2 cut(s) | 322, 330 |
| BpuMI | CCSGG | 2 cut(s) | 235, 253 |
| BsaBI | GATNNNNATC | 1 cut(s) | 644 |
| BsaI | GGTCTC | 1 cut(s) | 72 |
| BsaJI | CCNNGG | 6 cut(s) | 9, 174, 234, 365, 928, 1357 |
| BsaWI | WCCGGW | 1 cut(s) | 63 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 155, 185 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 233, 234, 320 |
| Bse1I | ACTGG | 5 cut(s) | 23, 228, 417, 690, 1123 |
| Bse3DI | GCAATG | 1 cut(s) | 939 |
| Bse8I | GATNNNNATC | 1 cut(s) | 644 |
| BseBI | CCWGG | 1 cut(s) | 10 |
| BseDI | CCNNGG | 6 cut(s) | 9, 174, 234, 365, 928, 1357 |
| BseGI | GGATG | 6 cut(s) | 222, 244, 310, 419, 748, 1353 |
| BseJI | GATNNNNATC | 1 cut(s) | 644 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 233, 234, 320 |
| BseMI | GCAATG | 1 cut(s) | 939 |
| BseMII | CTCAG | 2 cut(s) | 229, 852 |
| BseNI | ACTGG | 5 cut(s) | 23, 228, 417, 690, 1123 |
| BseRI | GAGGAG | 2 cut(s) | 50, 257 |
| BseSI | GKGCMC | 1 cut(s) | 365 |
| BsgI | GTGCAG | 1 cut(s) | 1302 |
| BshFI | GGCC | 3 cut(s) | 363, 488, 1034 |
| BshNI | GGYRCC | 1 cut(s) | 1240 |
| BsiHKAI | GWGCWC | 2 cut(s) | 8, 1114 |
| BsiSI | CCGG | 4 cut(s) | 64, 234, 253, 1189 |
| BslFI | GGGAC | 2 cut(s) | 26, 176 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 233, 234, 320 |
| BsmAI | GTCTC | 2 cut(s) | 72, 741 |
| BsmFI | GGGAC | 2 cut(s) | 26, 176 |
| BsnI | GGCC | 3 cut(s) | 363, 488, 1034 |
| Bso31I | GGTCTC | 1 cut(s) | 72 |
| Bsp119I | TTCGAA | 1 cut(s) | 88 |
| Bsp120I | GGGCCC | 1 cut(s) | 361 |
| Bsp1286I | GDGCHC | 4 cut(s) | 8, 365, 374, 1114 |
| Bsp143I | GATC | 2 cut(s) | 381, 762 |
| Bsp19I | CCATGG | 2 cut(s) | 928, 1357 |
| BspACI | CCGC | 5 cut(s) | 341, 428, 837, 933, 1031 |
| BspANI | GGCC | 3 cut(s) | 363, 488, 1034 |
| BspCNI | CTCAG | 2 cut(s) | 228, 853 |
| BspLI | GGNNCC | 5 cut(s) | 164, 363, 826, 1242, 1363 |
| BspMAI | CTGCAG | 1 cut(s) | 922 |
| BspMI | ACCTGC | 1 cut(s) | 911 |
| BspT104I | TTCGAA | 1 cut(s) | 88 |
| BspT107I | GGYRCC | 1 cut(s) | 1240 |
| BspTI | CTTAAG | 1 cut(s) | 674 |
| BspTNI | GGTCTC | 1 cut(s) | 72 |
| BsrDI | GCAATG | 1 cut(s) | 939 |
| BsrI | ACTGG | 5 cut(s) | 23, 228, 417, 690, 1123 |
| BssECI | CCNNGG | 6 cut(s) | 9, 174, 234, 365, 928, 1357 |
| BssMI | GATC | 2 cut(s) | 381, 762 |
| BssSI | CACGAG | 1 cut(s) | 978 |
| BssT1I | CCWWGG | 3 cut(s) | 365, 928, 1357 |
| Bst2BI | CACGAG | 1 cut(s) | 978 |
| Bst2UI | CCWGG | 1 cut(s) | 10 |
| Bst4CI | ACNGT | 5 cut(s) | 118, 167, 975, 1136, 1240 |
| Bst6I | CTCTTC | 1 cut(s) | 1161 |
| BstAFI | CTTAAG | 1 cut(s) | 674 |
| BstBI | TTCGAA | 1 cut(s) | 88 |
| BstC8I | GCNNGC | 5 cut(s) | 53, 785, 946, 1186, 1259 |
| BstDEI | CTNAG | 4 cut(s) | 215, 336, 424, 861 |
| BstDSI | CCRYGG | 3 cut(s) | 174, 928, 1357 |
| BstF5I | GGATG | 6 cut(s) | 222, 244, 310, 419, 748, 1353 |
| BstKTI | GATC | 2 cut(s) | 384, 765 |
| BstMAI | GTCTC | 2 cut(s) | 72, 741 |
| BstMBI | GATC | 2 cut(s) | 381, 762 |
| BstNI | CCWGG | 1 cut(s) | 10 |
| BstNSI | RCATGY | 1 cut(s) | 948 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 415 |
| BstSCI | CCNGG | 3 cut(s) | 8, 233, 251 |
| BstSFI | CTRYAG | 4 cut(s) | 465, 633, 649, 918 |
| BstSLI | GKGCMC | 1 cut(s) | 365 |
| BstV2I | GAAGAC | 2 cut(s) | 129, 133 |
| BsuI | GTATCC | 1 cut(s) | 241 |
| BsuRI | GGCC | 3 cut(s) | 363, 488, 1034 |
| BtgI | CCRYGG | 3 cut(s) | 174, 928, 1357 |
| BtsCI | GGATG | 6 cut(s) | 222, 244, 310, 419, 748, 1353 |
| BtsIMutI | CAGTG | 2 cut(s) | 223, 1116 |
| BveI | ACCTGC | 1 cut(s) | 911 |
| Cac8I | GCNNGC | 5 cut(s) | 53, 785, 946, 1186, 1259 |
| Cfr13I | GGNCC | 5 cut(s) | 163, 181, 361, 362, 1033 |
| CseI | GACGC | 2 cut(s) | 579, 993 |
| DdeI | CTNAG | 4 cut(s) | 215, 336, 424, 861 |
| DpnI | GATC | 2 cut(s) | 383, 764 |
| DpnII | GATC | 2 cut(s) | 381, 762 |
| DraI | TTTAAA | 1 cut(s) | 262 |
| DrdI | GACNNNNNNGTC | 2 cut(s) | 20, 137 |
| DseDI | GACNNNNNNGTC | 2 cut(s) | 20, 137 |
| Eam1104I | CTCTTC | 1 cut(s) | 1161 |
| EarI | CTCTTC | 1 cut(s) | 1161 |
| Ecl136II | GAGCTC | 1 cut(s) | 6 |
| Eco130I | CCWWGG | 3 cut(s) | 365, 928, 1357 |
| Eco24I | GRGCYC | 3 cut(s) | 8, 365, 374 |
| Eco31I | GGTCTC | 1 cut(s) | 72 |
| Eco47I | GGWCC | 2 cut(s) | 163, 181 |
| Eco53kI | GAGCTC | 1 cut(s) | 6 |
| EcoICRI | GAGCTC | 1 cut(s) | 6 |
| EcoRI | GAATTC | 2 cut(s) | 866, 1122 |
| EcoRII | CCWGG | 1 cut(s) | 8 |
| EcoT14I | CCWWGG | 3 cut(s) | 365, 928, 1357 |
| EcoT38I | GRGCYC | 3 cut(s) | 8, 365, 374 |
| ErhI | CCWWGG | 3 cut(s) | 365, 928, 1357 |
| FaqI | GGGAC | 2 cut(s) | 26, 176 |
| FauI | CCCGC | 1 cut(s) | 926 |
| FauNDI | CATATG | 1 cut(s) | 893 |
| FokI | GGATG | 6 cut(s) | 209, 251, 297, 406, 755, 1340 |
| FriOI | GRGCYC | 3 cut(s) | 8, 365, 374 |
| GsuI | CTGGAG | 1 cut(s) | 434 |
| HaeIII | GGCC | 3 cut(s) | 363, 488, 1034 |
| HapII | CCGG | 4 cut(s) | 64, 234, 253, 1189 |
| HgaI | GACGC | 2 cut(s) | 579, 993 |
| HincII | GTYRAC | 1 cut(s) | 889 |
| HindII | GTYRAC | 1 cut(s) | 889 |
| HinfI | GANTC | 4 cut(s) | 194, 416, 667, 1090 |
| HpaII | CCGG | 4 cut(s) | 64, 234, 253, 1189 |
| HphI | GGTGA | 2 cut(s) | 662, 784 |
| Hpy166II | GTNNAC | 4 cut(s) | 184, 308, 889, 1311 |
| Hpy188I | TCNGA | 3 cut(s) | 74, 574, 1229 |
| Hpy188III | TCNNGA | 5 cut(s) | 191, 205, 282, 347, 978 |
| Hpy8I | GTNNAC | 4 cut(s) | 184, 308, 889, 1311 |
| Hpy99I | CGWCG | 3 cut(s) | 122, 131, 595 |
| HpyAV | CCTTC | 4 cut(s) | 95, 464, 1071, 1165 |
| HpyCH4III | ACNGT | 5 cut(s) | 118, 167, 975, 1136, 1240 |
| HpyCH4IV | ACGT | 1 cut(s) | 200 |
| HpyF3I | CTNAG | 4 cut(s) | 215, 336, 424, 861 |
| HpySE526I | ACGT | 1 cut(s) | 200 |
| Kzo9I | GATC | 2 cut(s) | 381, 762 |
| LmnI | GCTCC | 4 cut(s) | 11, 35, 992, 1367 |
| LweI | GCATC | 2 cut(s) | 805, 1362 |
| MaeII | ACGT | 1 cut(s) | 200 |
| MaeIII | GTNAC | 6 cut(s) | 218, 659, 718, 975, 1216, 1267 |
| MalI | GATC | 2 cut(s) | 383, 764 |
| MboI | GATC | 2 cut(s) | 381, 762 |
| MboII | GAAGA | 6 cut(s) | 133, 134, 448, 451, 718, 1178 |
| MfeI | CAATTG | 2 cut(s) | 1020, 1327 |
| MhlI | GDGCHC | 4 cut(s) | 8, 365, 374, 1114 |
| MluCI | AATT | 8 cut(s) | 257, 597, 866, 1020, 1083, 1122, 1327, 1336 |
| MlyI | GAGTC | 2 cut(s) | 425, 1099 |
| MmeI | TCCRAC | 1 cut(s) | 97 |
| MseI | TTAA | 3 cut(s) | 261, 545, 675 |
| MspCI | CTTAAG | 1 cut(s) | 674 |
| MspI | CCGG | 4 cut(s) | 64, 234, 253, 1189 |
| MspR9I | CCNGG | 3 cut(s) | 10, 235, 253 |
| MunI | CAATTG | 2 cut(s) | 1020, 1327 |
| MvaI | CCWGG | 1 cut(s) | 10 |
| NciI | CCSGG | 2 cut(s) | 235, 253 |
| NcoI | CCATGG | 2 cut(s) | 928, 1357 |
| NdeI | CATATG | 1 cut(s) | 893 |
| NdeII | GATC | 2 cut(s) | 381, 762 |
| NlaIV | GGNNCC | 5 cut(s) | 164, 363, 826, 1242, 1363 |
| NmuCI | GTSAC | 6 cut(s) | 218, 659, 718, 975, 1216, 1267 |
| NspI | RCATGY | 1 cut(s) | 948 |
| NspV | TTCGAA | 1 cut(s) | 88 |
| PaeI | GCATGC | 1 cut(s) | 948 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 126 |
| PfeI | GAWTC | 2 cut(s) | 194, 667 |
| PleI | GAGTC | 2 cut(s) | 424, 1098 |
| PpsI | GAGTC | 2 cut(s) | 424, 1098 |
| PshAI | GACNNNNGTC | 1 cut(s) | 415 |
| Psp124BI | GAGCTC | 1 cut(s) | 8 |
| Psp1406I | AACGTT | 1 cut(s) | 200 |
| Psp6I | CCWGG | 1 cut(s) | 8 |
| PspGI | CCWGG | 1 cut(s) | 8 |
| PspN4I | GGNNCC | 5 cut(s) | 164, 363, 826, 1242, 1363 |
| PspOMI | GGGCCC | 1 cut(s) | 361 |
| PspPI | GGNCC | 5 cut(s) | 163, 181, 361, 362, 1033 |
| PstI | CTGCAG | 1 cut(s) | 922 |
| SacI | GAGCTC | 1 cut(s) | 8 |
| SaqAI | TTAA | 3 cut(s) | 261, 545, 675 |
| Sau3AI | GATC | 2 cut(s) | 381, 762 |
| Sau96I | GGNCC | 5 cut(s) | 163, 181, 361, 362, 1033 |
| SchI | GAGTC | 2 cut(s) | 425, 1099 |
| ScrFI | CCNGG | 3 cut(s) | 10, 235, 253 |
| SduI | GDGCHC | 4 cut(s) | 8, 365, 374, 1114 |
| SfaNI | GCATC | 2 cut(s) | 805, 1362 |
| SfcI | CTRYAG | 4 cut(s) | 465, 633, 649, 918 |
| SfuI | TTCGAA | 1 cut(s) | 88 |
| SinI | GGWCC | 2 cut(s) | 163, 181 |
| SmlI | CTYRAG | 3 cut(s) | 301, 345, 674 |
| SmoI | CTYRAG | 3 cut(s) | 301, 345, 674 |
| SphI | GCATGC | 1 cut(s) | 948 |
| Sse9I | AATT | 8 cut(s) | 257, 597, 866, 1020, 1083, 1122, 1327, 1336 |
| SsiI | CCGC | 5 cut(s) | 341, 428, 837, 933, 1031 |
| SstI | GAGCTC | 1 cut(s) | 8 |
| StyD4I | CCNGG | 3 cut(s) | 8, 233, 251 |
| StyI | CCWWGG | 3 cut(s) | 365, 928, 1357 |
| TaaI | ACNGT | 5 cut(s) | 118, 167, 975, 1136, 1240 |
| TaiI | ACGT | 1 cut(s) | 203 |
| TaqI | TCGA | 5 cut(s) | 24, 88, 120, 593, 765 |
| TasI | AATT | 8 cut(s) | 257, 597, 866, 1020, 1083, 1122, 1327, 1336 |
| TauI | GCSGC | 2 cut(s) | 344, 1034 |
| TfiI | GAWTC | 2 cut(s) | 194, 667 |
| Tru1I | TTAA | 3 cut(s) | 261, 545, 675 |
| Tru9I | TTAA | 3 cut(s) | 261, 545, 675 |
| TscAI | CASTG | 2 cut(s) | 223, 1123 |
| TseFI | GTSAC | 6 cut(s) | 218, 659, 718, 975, 1216, 1267 |
| Tsp45I | GTSAC | 6 cut(s) | 218, 659, 718, 975, 1216, 1267 |
| TspDTI | ATGAA | 5 cut(s) | 108, 567, 591, 634, 928 |
| TspGWI | ACGGA | 2 cut(s) | 163, 410 |
| TspRI | CASTG | 2 cut(s) | 223, 1123 |
| Vha464I | CTTAAG | 1 cut(s) | 674 |
| VpaK11BI | GGWCC | 2 cut(s) | 163, 181 |
| XapI | RAATTY | 4 cut(s) | 257, 866, 1122, 1336 |
| XceI | RCATGY | 1 cut(s) | 948 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1364 |