ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 198 |
| AciI | CCGC | 2 cut(s) | 310, 497 |
| AclWI | GGATC | 3 cut(s) | 7, 20, 567 |
| AcsI | RAATTY | 2 cut(s) | 61, 429 |
| AcvI | CACGTG | 1 cut(s) | 360 |
| AfaI | GTAC | 1 cut(s) | 634 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 180, 181, 571 |
| AflIII | ACRYGT | 1 cut(s) | 53 |
| AgsI | TTSAA | 2 cut(s) | 148, 734 |
| AjiI | CACGTC | 1 cut(s) | 56 |
| AjnI | CCWGG | 2 cut(s) | 289, 551 |
| AluBI | AGCT | 2 cut(s) | 397, 686 |
| AluI | AGCT | 2 cut(s) | 397, 686 |
| Alw21I | GWGCWC | 1 cut(s) | 289 |
| Alw26I | GTCTC | 5 cut(s) | 107, 238, 288, 367, 596 |
| AlwI | GGATC | 3 cut(s) | 7, 20, 567 |
| AoxI | GGCC | 1 cut(s) | 689 |
| ApoI | RAATTY | 2 cut(s) | 61, 429 |
| AspLEI | GCGC | 1 cut(s) | 90 |
| AspS9I | GGNCC | 1 cut(s) | 301 |
| AsuC2I | CCSGG | 1 cut(s) | 299 |
| AsuHPI | GGTGA | 2 cut(s) | 554, 731 |
| AvaII | GGWCC | 1 cut(s) | 301 |
| BamHI | GGATCC | 1 cut(s) | 12 |
| BbrPI | CACGTG | 1 cut(s) | 360 |
| BbsI | GAAGAC | 2 cut(s) | 155, 455 |
| Bbv12I | GWGCWC | 1 cut(s) | 289 |
| BceAI | ACGGC | 2 cut(s) | 343, 357 |
| BciT130I | CCWGG | 2 cut(s) | 291, 553 |
| BcnI | CCSGG | 1 cut(s) | 299 |
| BcoDI | GTCTC | 5 cut(s) | 107, 238, 288, 367, 596 |
| BfaI | CTAG | 1 cut(s) | 687 |
| BfoI | RGCGCY | 1 cut(s) | 91 |
| BisI | GCNGC | 1 cut(s) | 498 |
| BlsI | GCNGC | 1 cut(s) | 499 |
| Bme1390I | CCNGG | 3 cut(s) | 291, 299, 553 |
| Bme18I | GGWCC | 1 cut(s) | 301 |
| BmgBI | CACGTC | 1 cut(s) | 56 |
| BmgT120I | GGNCC | 1 cut(s) | 301 |
| BmiI | GGNNCC | 1 cut(s) | 14 |
| BmrFI | CCNGG | 3 cut(s) | 291, 299, 553 |
| BmrI | ACTGGG | 1 cut(s) | 462 |
| BmsI | GCATC | 3 cut(s) | 262, 344, 470 |
| BmuI | ACTGGG | 1 cut(s) | 462 |
| BpiI | GAAGAC | 2 cut(s) | 155, 455 |
| BpuEI | CTTGAG | 1 cut(s) | 424 |
| BpuMI | CCSGG | 1 cut(s) | 299 |
| BsaAI | YACGTR | 1 cut(s) | 360 |
| BsaI | GGTCTC | 1 cut(s) | 288 |
| BsaJI | CCNNGG | 2 cut(s) | 401, 650 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 180, 181, 571 |
| Bse1I | ACTGG | 2 cut(s) | 322, 457 |
| Bse3DI | GCAATG | 2 cut(s) | 37, 605 |
| BseBI | CCWGG | 2 cut(s) | 291, 553 |
| BseDI | CCNNGG | 2 cut(s) | 401, 650 |
| BseGI | GGATG | 3 cut(s) | 76, 228, 461 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 180, 181, 571 |
| BseMI | GCAATG | 2 cut(s) | 37, 605 |
| BseMII | CTCAG | 3 cut(s) | 249, 384, 673 |
| BseNI | ACTGG | 2 cut(s) | 322, 457 |
| BshFI | GGCC | 1 cut(s) | 691 |
| BsiHKAI | GWGCWC | 1 cut(s) | 289 |
| BsiSI | CCGG | 1 cut(s) | 299 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 180, 181, 571 |
| BsmAI | GTCTC | 5 cut(s) | 107, 238, 288, 367, 596 |
| BsmBI | CGTCTC | 1 cut(s) | 107 |
| BsmI | GAATGC | 1 cut(s) | 382 |
| BsnI | GGCC | 1 cut(s) | 691 |
| Bso31I | GGTCTC | 1 cut(s) | 288 |
| Bsp1286I | GDGCHC | 1 cut(s) | 289 |
| Bsp143I | GATC | 3 cut(s) | 12, 559, 662 |
| Bsp19I | CCATGG | 1 cut(s) | 401 |
| BspACI | CCGC | 2 cut(s) | 310, 497 |
| BspANI | GGCC | 1 cut(s) | 691 |
| BspCNI | CTCAG | 3 cut(s) | 248, 385, 672 |
| BspHI | TCATGA | 1 cut(s) | 369 |
| BspLI | GGNNCC | 1 cut(s) | 14 |
| BspPI | GGATC | 3 cut(s) | 7, 20, 567 |
| BspTNI | GGTCTC | 1 cut(s) | 288 |
| BsrDI | GCAATG | 2 cut(s) | 37, 605 |
| BsrI | ACTGG | 2 cut(s) | 322, 457 |
| BssECI | CCNNGG | 2 cut(s) | 401, 650 |
| BssMI | GATC | 3 cut(s) | 12, 559, 662 |
| BssT1I | CCWWGG | 2 cut(s) | 401, 650 |
| Bst2UI | CCWGG | 2 cut(s) | 291, 553 |
| Bst4CI | ACNGT | 2 cut(s) | 195, 700 |
| BstBAI | YACGTR | 1 cut(s) | 360 |
| BstC8I | GCNNGC | 2 cut(s) | 210, 612 |
| BstDEI | CTNAG | 4 cut(s) | 235, 393, 518, 659 |
| BstDSI | CCRYGG | 1 cut(s) | 401 |
| BstF5I | GGATG | 3 cut(s) | 76, 228, 461 |
| BstH2I | RGCGCY | 1 cut(s) | 91 |
| BstHHI | GCGC | 1 cut(s) | 90 |
| BstKTI | GATC | 3 cut(s) | 15, 562, 665 |
| BstMAI | GTCTC | 5 cut(s) | 107, 238, 288, 367, 596 |
| BstMBI | GATC | 3 cut(s) | 12, 559, 662 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 341, 503 |
| BstNI | CCWGG | 2 cut(s) | 291, 553 |
| BstSCI | CCNGG | 3 cut(s) | 289, 297, 551 |
| BstV2I | GAAGAC | 2 cut(s) | 155, 455 |
| BstX2I | RGATCY | 1 cut(s) | 12 |
| BstYI | RGATCY | 1 cut(s) | 12 |
| BsuRI | GGCC | 1 cut(s) | 691 |
| BtgI | CCRYGG | 1 cut(s) | 401 |
| BtrI | CACGTC | 1 cut(s) | 56 |
| BtsCI | GGATG | 3 cut(s) | 76, 228, 461 |
| Cac8I | GCNNGC | 2 cut(s) | 210, 612 |
| CciI | TCATGA | 1 cut(s) | 369 |
| CfoI | GCGC | 1 cut(s) | 90 |
| Cfr13I | GGNCC | 1 cut(s) | 301 |
| CsiI | ACCWGGT | 1 cut(s) | 551 |
| Csp6I | GTAC | 1 cut(s) | 633 |
| CviAII | CATG | 4 cut(s) | 170, 276, 370, 402 |
| CviQI | GTAC | 1 cut(s) | 633 |
| DdeI | CTNAG | 4 cut(s) | 235, 393, 518, 659 |
| DpnI | GATC | 3 cut(s) | 14, 561, 664 |
| DpnII | GATC | 3 cut(s) | 12, 559, 662 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 198 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 198 |
| Eco130I | CCWWGG | 2 cut(s) | 401, 650 |
| Eco31I | GGTCTC | 1 cut(s) | 288 |
| Eco47I | GGWCC | 1 cut(s) | 301 |
| Eco72I | CACGTG | 1 cut(s) | 360 |
| EcoRII | CCWGG | 2 cut(s) | 289, 551 |
| EcoT14I | CCWWGG | 2 cut(s) | 401, 650 |
| EcoT22I | ATGCAT | 1 cut(s) | 277 |
| ErhI | CCWWGG | 2 cut(s) | 401, 650 |
| Esp3I | CGTCTC | 1 cut(s) | 107 |
| FaeI | CATG | 4 cut(s) | 173, 279, 373, 405 |
| FatI | CATG | 4 cut(s) | 169, 275, 369, 401 |
| Fnu4HI | GCNGC | 1 cut(s) | 498 |
| FokI | GGATG | 3 cut(s) | 83, 235, 448 |
| Fsp4HI | GCNGC | 1 cut(s) | 498 |
| FspBI | CTAG | 1 cut(s) | 687 |
| GlaI | GCGC | 1 cut(s) | 89 |
| GluI | GCNGC | 1 cut(s) | 498 |
| HaeII | RGCGCY | 1 cut(s) | 91 |
| HaeIII | GGCC | 1 cut(s) | 691 |
| HapII | CCGG | 1 cut(s) | 299 |
| HhaI | GCGC | 1 cut(s) | 90 |
| Hin1II | CATG | 4 cut(s) | 173, 279, 373, 405 |
| Hin6I | GCGC | 1 cut(s) | 88 |
| HinP1I | GCGC | 1 cut(s) | 88 |
| HinfI | GANTC | 4 cut(s) | 364, 389, 579, 730 |
| HpaII | CCGG | 1 cut(s) | 299 |
| HphI | GGTGA | 2 cut(s) | 554, 731 |
| Hpy166II | GTNNAC | 1 cut(s) | 315 |
| Hpy188I | TCNGA | 6 cut(s) | 12, 60, 351, 388, 394, 662 |
| Hpy188III | TCNNGA | 1 cut(s) | 370 |
| Hpy8I | GTNNAC | 1 cut(s) | 315 |
| Hpy99I | CGWCG | 1 cut(s) | 351 |
| HpyCH4III | ACNGT | 2 cut(s) | 195, 700 |
| HpyCH4IV | ACGT | 3 cut(s) | 55, 116, 359 |
| HpyCH4V | TGCA | 6 cut(s) | 30, 275, 382, 506, 610, 707 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 341, 503 |
| HpyF3I | CTNAG | 4 cut(s) | 235, 393, 518, 659 |
| HpySE526I | ACGT | 3 cut(s) | 55, 116, 359 |
| Hsp92II | CATG | 4 cut(s) | 173, 279, 373, 405 |
| HspAI | GCGC | 1 cut(s) | 88 |
| Kzo9I | GATC | 3 cut(s) | 12, 559, 662 |
| LmnI | GCTCC | 4 cut(s) | 85, 284, 574, 683 |
| LpnPI | CCDG | 9 cut(s) | 276, 303, 303, 312, 438, 538, 565, 580, 702 |
| LweI | GCATC | 3 cut(s) | 262, 344, 470 |
| MabI | ACCWGGT | 1 cut(s) | 551 |
| MaeI | CTAG | 1 cut(s) | 687 |
| MaeII | ACGT | 3 cut(s) | 55, 116, 359 |
| MaeIII | GTNAC | 1 cut(s) | 49 |
| MalI | GATC | 3 cut(s) | 14, 561, 664 |
| MboI | GATC | 3 cut(s) | 12, 559, 662 |
| MboII | GAAGA | 3 cut(s) | 160, 460, 635 |
| MflI | RGATCY | 1 cut(s) | 12 |
| MhlI | GDGCHC | 1 cut(s) | 289 |
| MluCI | AATT | 5 cut(s) | 43, 61, 135, 408, 429 |
| MlyI | GAGTC | 1 cut(s) | 573 |
| MmeI | TCCRAC | 2 cut(s) | 48, 329 |
| MnlI | CCTC | 1 cut(s) | 613 |
| Mph1103I | ATGCAT | 1 cut(s) | 277 |
| MseI | TTAA | 1 cut(s) | 423 |
| MslI | CAYNNNNRTG | 1 cut(s) | 270 |
| MspI | CCGG | 1 cut(s) | 299 |
| MspR9I | CCNGG | 3 cut(s) | 291, 299, 553 |
| Mva1269I | GAATGC | 1 cut(s) | 382 |
| MvaI | CCWGG | 2 cut(s) | 291, 553 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 341, 503 |
| NciI | CCSGG | 1 cut(s) | 299 |
| NcoI | CCATGG | 1 cut(s) | 401 |
| NdeII | GATC | 3 cut(s) | 12, 559, 662 |
| NlaIII | CATG | 4 cut(s) | 173, 279, 373, 405 |
| NlaIV | GGNNCC | 1 cut(s) | 14 |
| NmuCI | GTSAC | 1 cut(s) | 49 |
| NsiI | ATGCAT | 1 cut(s) | 277 |
| PagI | TCATGA | 1 cut(s) | 369 |
| PctI | GAATGC | 1 cut(s) | 382 |
| PfeI | GAWTC | 3 cut(s) | 364, 389, 730 |
| PkrI | GCNGC | 1 cut(s) | 499 |
| PleI | GAGTC | 1 cut(s) | 573 |
| PmaCI | CACGTG | 1 cut(s) | 360 |
| PmlI | CACGTG | 1 cut(s) | 360 |
| PpsI | GAGTC | 1 cut(s) | 573 |
| Ppu21I | YACGTR | 1 cut(s) | 360 |
| Psp6I | CCWGG | 2 cut(s) | 289, 551 |
| PspCI | CACGTG | 1 cut(s) | 360 |
| PspGI | CCWGG | 2 cut(s) | 289, 551 |
| PspN4I | GGNNCC | 1 cut(s) | 14 |
| PspPI | GGNCC | 1 cut(s) | 301 |
| PsuI | RGATCY | 1 cut(s) | 12 |
| RsaI | GTAC | 1 cut(s) | 634 |
| RsaNI | GTAC | 1 cut(s) | 633 |
| RseI | CAYNNNNRTG | 1 cut(s) | 270 |
| SaqAI | TTAA | 1 cut(s) | 423 |
| SatI | GCNGC | 1 cut(s) | 498 |
| Sau3AI | GATC | 3 cut(s) | 12, 559, 662 |
| Sau96I | GGNCC | 1 cut(s) | 301 |
| SchI | GAGTC | 1 cut(s) | 573 |
| ScrFI | CCNGG | 3 cut(s) | 291, 299, 553 |
| SduI | GDGCHC | 1 cut(s) | 289 |
| SetI | ASST | 8 cut(s) | 58, 119, 362, 399, 554, 652, 688, 721 |
| SexAI | ACCWGGT | 1 cut(s) | 551 |
| SfaNI | GCATC | 3 cut(s) | 262, 344, 470 |
| SinI | GGWCC | 1 cut(s) | 301 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 270 |
| SmlI | CTYRAG | 1 cut(s) | 439 |
| SmoI | CTYRAG | 1 cut(s) | 439 |
| Sse9I | AATT | 5 cut(s) | 43, 61, 135, 408, 429 |
| SsiI | CCGC | 2 cut(s) | 310, 497 |
| SspMI | CTAG | 1 cut(s) | 687 |
| StyD4I | CCNGG | 3 cut(s) | 289, 297, 551 |
| StyI | CCWWGG | 2 cut(s) | 401, 650 |
| TaaI | ACNGT | 2 cut(s) | 195, 700 |
| TaiI | ACGT | 3 cut(s) | 58, 119, 362 |
| TaqI | TCGA | 1 cut(s) | 582 |
| TaqII | GACCGA | 1 cut(s) | 37 |
| TasI | AATT | 5 cut(s) | 43, 61, 135, 408, 429 |
| TauI | GCSGC | 1 cut(s) | 500 |
| TfiI | GAWTC | 3 cut(s) | 364, 389, 730 |
| Tru1I | TTAA | 1 cut(s) | 423 |
| Tru9I | TTAA | 1 cut(s) | 423 |
| TseFI | GTSAC | 1 cut(s) | 49 |
| Tsp45I | GTSAC | 1 cut(s) | 49 |
| TspDTI | ATGAA | 6 cut(s) | 236, 239, 243, 441, 497, 629 |
| VpaK11BI | GGWCC | 1 cut(s) | 301 |
| XapI | RAATTY | 2 cut(s) | 61, 429 |
| XspI | CTAG | 1 cut(s) | 687 |
| Zsp2I | ATGCAT | 1 cut(s) | 277 |