ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc65I | GGTACC | 1 cut(s) | 225 |
| AccB1I | GGYRCC | 2 cut(s) | 225, 834 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 235, 814 |
| AccBSI | CCGCTC | 1 cut(s) | 832 |
| AciI | CCGC | 1 cut(s) | 832 |
| AclWI | GGATC | 2 cut(s) | 304, 670 |
| AcsI | RAATTY | 1 cut(s) | 308 |
| AcyI | GRCGYC | 1 cut(s) | 907 |
| AfaI | GTAC | 2 cut(s) | 72, 227 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 235, 469, 631, 698, 814, 831 |
| AgsI | TTSAA | 4 cut(s) | 53, 169, 696, 727 |
| AjnI | CCWGG | 1 cut(s) | 292 |
| AluBI | AGCT | 4 cut(s) | 128, 476, 503, 797 |
| AluI | AGCT | 4 cut(s) | 128, 476, 503, 797 |
| Alw26I | GTCTC | 3 cut(s) | 110, 238, 402 |
| AlwI | GGATC | 2 cut(s) | 304, 670 |
| AoxI | GGCC | 1 cut(s) | 460 |
| ApeKI | GCWGC | 5 cut(s) | 125, 174, 473, 476, 766 |
| ApoI | RAATTY | 1 cut(s) | 308 |
| AseI | ATTAAT | 1 cut(s) | 788 |
| Asp718I | GGTACC | 1 cut(s) | 225 |
| AspA2I | CCTAGG | 1 cut(s) | 464 |
| AspS9I | GGNCC | 2 cut(s) | 461, 542 |
| AsuHPI | GGTGA | 1 cut(s) | 603 |
| AsuNHI | GCTAGC | 1 cut(s) | 121 |
| AvaII | GGWCC | 1 cut(s) | 542 |
| AvrII | CCTAGG | 1 cut(s) | 464 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 217, 250 |
| BanI | GGYRCC | 2 cut(s) | 225, 834 |
| BbvI | GCAGC | 5 cut(s) | 137, 161, 463, 485, 778 |
| BccI | CCATC | 1 cut(s) | 675 |
| BciT130I | CCWGG | 1 cut(s) | 294 |
| BclI | TGATCA | 2 cut(s) | 253, 579 |
| BcoDI | GTCTC | 3 cut(s) | 110, 238, 402 |
| BfaI | CTAG | 6 cut(s) | 20, 122, 132, 465, 506, 591 |
| BisI | GCNGC | 5 cut(s) | 126, 175, 474, 477, 767 |
| BlnI | CCTAGG | 1 cut(s) | 464 |
| BlsI | GCNGC | 5 cut(s) | 127, 176, 475, 478, 768 |
| Bme1390I | CCNGG | 1 cut(s) | 294 |
| Bme18I | GGWCC | 1 cut(s) | 542 |
| BmgT120I | GGNCC | 2 cut(s) | 461, 542 |
| BmiI | GGNNCC | 3 cut(s) | 227, 623, 836 |
| BmrFI | CCNGG | 1 cut(s) | 294 |
| BmsI | GCATC | 2 cut(s) | 52, 376 |
| BmtI | GCTAGC | 1 cut(s) | 125 |
| BpuEI | CTTGAG | 1 cut(s) | 42 |
| Bsa29I | ATCGAT | 1 cut(s) | 273 |
| BsaAI | YACGTR | 1 cut(s) | 548 |
| BsaHI | GRCGYC | 1 cut(s) | 907 |
| BsaJI | CCNNGG | 4 cut(s) | 229, 404, 464, 519 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 626, 656 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 235, 469, 631, 698, 814, 831 |
| Bse1I | ACTGG | 2 cut(s) | 325, 808 |
| Bse3DI | GCAATG | 1 cut(s) | 857 |
| BseBI | CCWGG | 1 cut(s) | 294 |
| BseCI | ATCGAT | 1 cut(s) | 273 |
| BseDI | CCNNGG | 4 cut(s) | 229, 404, 464, 519 |
| BseGI | GGATG | 6 cut(s) | 340, 391, 686, 690, 850, 898 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 235, 469, 631, 698, 814, 831 |
| BseMI | GCAATG | 1 cut(s) | 857 |
| BseNI | ACTGG | 2 cut(s) | 325, 808 |
| BseRI | GAGGAG | 2 cut(s) | 212, 647 |
| BseXI | GCAGC | 5 cut(s) | 137, 161, 463, 485, 778 |
| BshFI | GGCC | 1 cut(s) | 462 |
| BshNI | GGYRCC | 2 cut(s) | 225, 834 |
| BshVI | ATCGAT | 1 cut(s) | 273 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 235, 469, 631, 698, 814, 831 |
| BsmAI | GTCTC | 3 cut(s) | 110, 238, 402 |
| BsmBI | CGTCTC | 2 cut(s) | 110, 402 |
| BsmI | GAATGC | 1 cut(s) | 215 |
| BsnI | GGCC | 1 cut(s) | 462 |
| Bsp143I | GATC | 6 cut(s) | 253, 296, 377, 579, 608, 662 |
| Bsp19I | CCATGG | 2 cut(s) | 229, 404 |
| BspACI | CCGC | 1 cut(s) | 832 |
| BspANI | GGCC | 1 cut(s) | 462 |
| BspDI | ATCGAT | 1 cut(s) | 273 |
| BspLI | GGNNCC | 3 cut(s) | 227, 623, 836 |
| BspOI | GCTAGC | 1 cut(s) | 125 |
| BspPI | GGATC | 2 cut(s) | 304, 670 |
| BspT107I | GGYRCC | 2 cut(s) | 225, 834 |
| BsrBI | CCGCTC | 1 cut(s) | 832 |
| BsrDI | GCAATG | 1 cut(s) | 857 |
| BsrI | ACTGG | 2 cut(s) | 325, 808 |
| BssECI | CCNNGG | 4 cut(s) | 229, 404, 464, 519 |
| BssMI | GATC | 6 cut(s) | 253, 296, 377, 579, 608, 662 |
| BssNI | GRCGYC | 1 cut(s) | 907 |
| BssT1I | CCWWGG | 4 cut(s) | 229, 404, 464, 519 |
| Bst2UI | CCWGG | 1 cut(s) | 294 |
| Bst4CI | ACNGT | 3 cut(s) | 332, 621, 659 |
| BstACI | GRCGYC | 1 cut(s) | 907 |
| BstBAI | YACGTR | 1 cut(s) | 548 |
| BstC8I | GCNNGC | 2 cut(s) | 123, 501 |
| BstDEI | CTNAG | 1 cut(s) | 415 |
| BstDSI | CCRYGG | 2 cut(s) | 229, 404 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 696 |
| BstF5I | GGATG | 6 cut(s) | 340, 391, 686, 690, 850, 898 |
| BstKTI | GATC | 6 cut(s) | 256, 299, 380, 582, 611, 665 |
| BstMAI | GTCTC | 3 cut(s) | 110, 238, 402 |
| BstMBI | GATC | 6 cut(s) | 253, 296, 377, 579, 608, 662 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 829 |
| BstNI | CCWGG | 1 cut(s) | 294 |
| BstSCI | CCNGG | 1 cut(s) | 292 |
| BstV1I | GCAGC | 5 cut(s) | 137, 161, 463, 485, 778 |
| BstX2I | RGATCY | 1 cut(s) | 662 |
| BstYI | RGATCY | 1 cut(s) | 662 |
| Bsu15I | ATCGAT | 1 cut(s) | 273 |
| BsuRI | GGCC | 1 cut(s) | 462 |
| BsuTUI | ATCGAT | 1 cut(s) | 273 |
| BtgI | CCRYGG | 2 cut(s) | 229, 404 |
| BtsCI | GGATG | 6 cut(s) | 340, 391, 686, 690, 850, 898 |
| Cac8I | GCNNGC | 2 cut(s) | 123, 501 |
| Cfr13I | GGNCC | 2 cut(s) | 461, 542 |
| ClaI | ATCGAT | 1 cut(s) | 273 |
| CseI | GACGC | 3 cut(s) | 127, 758, 896 |
| Csp6I | GTAC | 2 cut(s) | 71, 226 |
| CviAII | CATG | 4 cut(s) | 220, 230, 363, 405 |
| CviQI | GTAC | 2 cut(s) | 71, 226 |
| DdeI | CTNAG | 1 cut(s) | 415 |
| DpnI | GATC | 6 cut(s) | 255, 298, 379, 581, 610, 664 |
| DpnII | GATC | 6 cut(s) | 253, 296, 377, 579, 608, 662 |
| Eco130I | CCWWGG | 4 cut(s) | 229, 404, 464, 519 |
| Eco32I | GATATC | 1 cut(s) | 433 |
| Eco47I | GGWCC | 1 cut(s) | 542 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 696 |
| EcoRII | CCWGG | 1 cut(s) | 292 |
| EcoRV | GATATC | 1 cut(s) | 433 |
| EcoT14I | CCWWGG | 4 cut(s) | 229, 404, 464, 519 |
| ErhI | CCWWGG | 4 cut(s) | 229, 404, 464, 519 |
| Esp3I | CGTCTC | 2 cut(s) | 110, 402 |
| FaeI | CATG | 4 cut(s) | 223, 233, 366, 408 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 786, 818 |
| FatI | CATG | 4 cut(s) | 219, 229, 362, 404 |
| FauNDI | CATATG | 1 cut(s) | 774 |
| FbaI | TGATCA | 2 cut(s) | 253, 579 |
| Fnu4HI | GCNGC | 5 cut(s) | 126, 175, 474, 477, 767 |
| FokI | GGATG | 6 cut(s) | 327, 398, 693, 697, 857, 905 |
| Fsp4HI | GCNGC | 5 cut(s) | 126, 175, 474, 477, 767 |
| FspBI | CTAG | 6 cut(s) | 20, 122, 132, 465, 506, 591 |
| GluI | GCNGC | 5 cut(s) | 126, 175, 474, 477, 767 |
| HaeIII | GGCC | 1 cut(s) | 462 |
| HgaI | GACGC | 3 cut(s) | 127, 758, 896 |
| Hin1I | GRCGYC | 1 cut(s) | 907 |
| Hin1II | CATG | 4 cut(s) | 223, 233, 366, 408 |
| HincII | GTYRAC | 1 cut(s) | 911 |
| HindII | GTYRAC | 1 cut(s) | 911 |
| HinfI | GANTC | 3 cut(s) | 16, 200, 367 |
| HphI | GGTGA | 1 cut(s) | 603 |
| Hpy166II | GTNNAC | 1 cut(s) | 911 |
| Hpy188I | TCNGA | 3 cut(s) | 360, 556, 626 |
| Hpy188III | TCNNGA | 4 cut(s) | 25, 59, 540, 583 |
| Hpy8I | GTNNAC | 1 cut(s) | 911 |
| HpyAV | CCTTC | 3 cut(s) | 578, 702, 742 |
| HpyCH4III | ACNGT | 3 cut(s) | 332, 621, 659 |
| HpyCH4IV | ACGT | 4 cut(s) | 88, 250, 547, 649 |
| HpyCH4V | TGCA | 4 cut(s) | 155, 177, 389, 862 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 829 |
| HpyF3I | CTNAG | 1 cut(s) | 415 |
| HpySE526I | ACGT | 4 cut(s) | 88, 250, 547, 649 |
| Hsp92I | GRCGYC | 1 cut(s) | 907 |
| Hsp92II | CATG | 4 cut(s) | 223, 233, 366, 408 |
| KpnI | GGTACC | 1 cut(s) | 229 |
| Ksp22I | TGATCA | 2 cut(s) | 253, 579 |
| Kzo9I | GATC | 6 cut(s) | 253, 296, 377, 579, 608, 662 |
| LmnI | GCTCC | 3 cut(s) | 133, 484, 717 |
| Lsp1109I | GCAGC | 5 cut(s) | 137, 161, 463, 485, 778 |
| LweI | GCATC | 2 cut(s) | 52, 376 |
| MaeI | CTAG | 6 cut(s) | 20, 122, 132, 465, 506, 591 |
| MaeII | ACGT | 4 cut(s) | 88, 250, 547, 649 |
| MaeIII | GTNAC | 3 cut(s) | 89, 642, 701 |
| MalI | GATC | 6 cut(s) | 255, 298, 379, 581, 610, 664 |
| MbiI | CCGCTC | 1 cut(s) | 832 |
| MboI | GATC | 6 cut(s) | 253, 296, 377, 579, 608, 662 |
| MflI | RGATCY | 1 cut(s) | 662 |
| MluCI | AATT | 5 cut(s) | 28, 75, 142, 308, 785 |
| MlyI | GAGTC | 1 cut(s) | 209 |
| MmeI | TCCRAC | 2 cut(s) | 465, 700 |
| MnlI | CCTC | 7 cut(s) | 29, 190, 198, 462, 625, 745, 751 |
| MseI | TTAA | 4 cut(s) | 42, 426, 788, 812 |
| MslI | CAYNNNNRTG | 2 cut(s) | 220, 273 |
| MspA1I | CMGCKG | 1 cut(s) | 476 |
| MspR9I | CCNGG | 1 cut(s) | 294 |
| Mva1269I | GAATGC | 1 cut(s) | 215 |
| MvaI | CCWGG | 1 cut(s) | 294 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 829 |
| NcoI | CCATGG | 2 cut(s) | 229, 404 |
| NdeI | CATATG | 1 cut(s) | 774 |
| NdeII | GATC | 6 cut(s) | 253, 296, 377, 579, 608, 662 |
| NheI | GCTAGC | 1 cut(s) | 121 |
| NlaIII | CATG | 4 cut(s) | 223, 233, 366, 408 |
| NlaIV | GGNNCC | 3 cut(s) | 227, 623, 836 |
| NmuCI | GTSAC | 1 cut(s) | 642 |
| PctI | GAATGC | 1 cut(s) | 215 |
| PfeI | GAWTC | 2 cut(s) | 16, 367 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 235, 814 |
| PkrI | GCNGC | 5 cut(s) | 127, 176, 475, 478, 768 |
| PleI | GAGTC | 1 cut(s) | 208 |
| PpsI | GAGTC | 1 cut(s) | 208 |
| Ppu21I | YACGTR | 1 cut(s) | 548 |
| PshBI | ATTAAT | 1 cut(s) | 788 |
| Psp6I | CCWGG | 1 cut(s) | 292 |
| PspGI | CCWGG | 1 cut(s) | 292 |
| PspN4I | GGNNCC | 3 cut(s) | 227, 623, 836 |
| PspPI | GGNCC | 2 cut(s) | 461, 542 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 63, 95 |
| PsuI | RGATCY | 1 cut(s) | 662 |
| PvuII | CAGCTG | 1 cut(s) | 476 |
| RsaI | GTAC | 2 cut(s) | 72, 227 |
| RsaNI | GTAC | 2 cut(s) | 71, 226 |
| RseI | CAYNNNNRTG | 2 cut(s) | 220, 273 |
| SaqAI | TTAA | 4 cut(s) | 42, 426, 788, 812 |
| SatI | GCNGC | 5 cut(s) | 126, 175, 474, 477, 767 |
| Sau3AI | GATC | 6 cut(s) | 253, 296, 377, 579, 608, 662 |
| Sau96I | GGNCC | 2 cut(s) | 461, 542 |
| SchI | GAGTC | 1 cut(s) | 209 |
| ScrFI | CCNGG | 1 cut(s) | 294 |
| SfaNI | GCATC | 2 cut(s) | 52, 376 |
| SinI | GGWCC | 1 cut(s) | 542 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 220, 273 |
| SmlI | CTYRAG | 1 cut(s) | 57 |
| SmoI | CTYRAG | 1 cut(s) | 57 |
| Sse9I | AATT | 5 cut(s) | 28, 75, 142, 308, 785 |
| SsiI | CCGC | 1 cut(s) | 832 |
| SspI | AATATT | 1 cut(s) | 732 |
| SspMI | CTAG | 6 cut(s) | 20, 122, 132, 465, 506, 591 |
| StyD4I | CCNGG | 1 cut(s) | 292 |
| StyI | CCWWGG | 4 cut(s) | 229, 404, 464, 519 |
| TaaI | ACNGT | 3 cut(s) | 332, 621, 659 |
| TaiI | ACGT | 4 cut(s) | 91, 253, 550, 652 |
| TaqI | TCGA | 2 cut(s) | 203, 273 |
| TasI | AATT | 5 cut(s) | 28, 75, 142, 308, 785 |
| TfiI | GAWTC | 2 cut(s) | 16, 367 |
| Tru1I | TTAA | 4 cut(s) | 42, 426, 788, 812 |
| Tru9I | TTAA | 4 cut(s) | 42, 426, 788, 812 |
| TseFI | GTSAC | 1 cut(s) | 642 |
| TseI | GCWGC | 5 cut(s) | 125, 174, 473, 476, 766 |
| Tsp45I | GTSAC | 1 cut(s) | 642 |
| TspDTI | ATGAA | 6 cut(s) | 91, 208, 251, 545, 797, 909 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 235, 814 |
| VpaK11BI | GGWCC | 1 cut(s) | 542 |
| VspI | ATTAAT | 1 cut(s) | 788 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 696 |
| XapI | RAATTY | 1 cut(s) | 308 |
| XmaJI | CCTAGG | 1 cut(s) | 464 |
| XspI | CTAG | 6 cut(s) | 20, 122, 132, 465, 506, 591 |