ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 1 cut(s) | 41 |
| AccI | GTMKAC | 1 cut(s) | 447 |
| AclWI | GGATC | 1 cut(s) | 350 |
| AcoI | YGGCCR | 1 cut(s) | 14 |
| AcsI | RAATTY | 2 cut(s) | 110, 279 |
| AfaI | GTAC | 1 cut(s) | 257 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 41, 335, 363, 484 |
| AgsI | TTSAA | 1 cut(s) | 105 |
| AjiI | CACGTC | 1 cut(s) | 391 |
| AjnI | CCWGG | 4 cut(s) | 40, 82, 140, 232 |
| AluBI | AGCT | 2 cut(s) | 22, 181 |
| AluI | AGCT | 2 cut(s) | 22, 181 |
| AlwI | GGATC | 1 cut(s) | 350 |
| Ama87I | CYCGRG | 1 cut(s) | 311 |
| AoxI | GGCC | 4 cut(s) | 14, 138, 236, 497 |
| ApeKI | GCWGC | 2 cut(s) | 22, 64 |
| ApoI | RAATTY | 2 cut(s) | 110, 279 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 196, 228 |
| AspS9I | GGNCC | 3 cut(s) | 138, 236, 498 |
| AsuC2I | CCSGG | 1 cut(s) | 121 |
| AsuHPI | GGTGA | 2 cut(s) | 222, 465 |
| AsuII | TTCGAA | 2 cut(s) | 54, 416 |
| AvaI | CYCGRG | 1 cut(s) | 311 |
| BalI | TGGCCA | 1 cut(s) | 16 |
| BbvI | GCAGC | 2 cut(s) | 9, 76 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 113, 147 |
| BciT130I | CCWGG | 4 cut(s) | 42, 84, 142, 234 |
| BciVI | GTATCC | 1 cut(s) | 311 |
| BclI | TGATCA | 2 cut(s) | 317, 455 |
| BcnI | CCSGG | 1 cut(s) | 121 |
| BfuI | GTATCC | 1 cut(s) | 311 |
| BisI | GCNGC | 2 cut(s) | 23, 65 |
| BlsI | GCNGC | 2 cut(s) | 24, 66 |
| Bme1390I | CCNGG | 5 cut(s) | 42, 84, 121, 142, 234 |
| BmeT110I | CYCGRG | 1 cut(s) | 311 |
| BmgBI | CACGTC | 1 cut(s) | 391 |
| BmgT120I | GGNCC | 3 cut(s) | 138, 236, 498 |
| BmiI | GGNNCC | 2 cut(s) | 46, 139 |
| BmrFI | CCNGG | 5 cut(s) | 42, 84, 121, 142, 234 |
| BmrI | ACTGGG | 1 cut(s) | 473 |
| BmuI | ACTGGG | 1 cut(s) | 473 |
| BpmI | CTGGAG | 2 cut(s) | 368, 506 |
| Bpu14I | TTCGAA | 2 cut(s) | 54, 416 |
| BpuMI | CCSGG | 1 cut(s) | 121 |
| Bsa29I | ATCGAT | 1 cut(s) | 243 |
| BsaJI | CCNNGG | 2 cut(s) | 82, 233 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 41, 335, 363, 484 |
| Bse1I | ACTGG | 2 cut(s) | 468, 489 |
| BseBI | CCWGG | 4 cut(s) | 42, 84, 142, 234 |
| BseCI | ATCGAT | 1 cut(s) | 243 |
| BseDI | CCNNGG | 2 cut(s) | 82, 233 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 41, 335, 363, 484 |
| BseMII | CTCAG | 1 cut(s) | 322 |
| BseNI | ACTGG | 2 cut(s) | 468, 489 |
| BseRI | GAGGAG | 1 cut(s) | 346 |
| BseXI | GCAGC | 2 cut(s) | 9, 76 |
| BseYI | CCCAGC | 1 cut(s) | 94 |
| Bsh1285I | CGRYCG | 1 cut(s) | 340 |
| BshFI | GGCC | 4 cut(s) | 16, 140, 238, 499 |
| BshVI | ATCGAT | 1 cut(s) | 243 |
| BsiEI | CGRYCG | 1 cut(s) | 340 |
| BsiHKCI | CYCGRG | 1 cut(s) | 311 |
| BsiSI | CCGG | 1 cut(s) | 120 |
| BslFI | GGGAC | 1 cut(s) | 335 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 41, 335, 363, 484 |
| BsmFI | GGGAC | 1 cut(s) | 335 |
| BsnI | GGCC | 4 cut(s) | 16, 140, 238, 499 |
| BsoBI | CYCGRG | 1 cut(s) | 311 |
| Bsp119I | TTCGAA | 2 cut(s) | 54, 416 |
| Bsp143I | GATC | 3 cut(s) | 317, 342, 455 |
| BspANI | GGCC | 4 cut(s) | 16, 140, 238, 499 |
| BspCNI | CTCAG | 1 cut(s) | 323 |
| BspDI | ATCGAT | 1 cut(s) | 243 |
| BspLI | GGNNCC | 2 cut(s) | 46, 139 |
| BspPI | GGATC | 1 cut(s) | 350 |
| BspT104I | TTCGAA | 2 cut(s) | 54, 416 |
| BsrI | ACTGG | 2 cut(s) | 468, 489 |
| BssECI | CCNNGG | 2 cut(s) | 82, 233 |
| BssMI | GATC | 3 cut(s) | 317, 342, 455 |
| Bst2UI | CCWGG | 4 cut(s) | 42, 84, 142, 234 |
| Bst4CI | ACNGT | 1 cut(s) | 349 |
| Bst6I | CTCTTC | 1 cut(s) | 329 |
| BstBI | TTCGAA | 2 cut(s) | 54, 416 |
| BstDEI | CTNAG | 1 cut(s) | 331 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 361 |
| BstKTI | GATC | 3 cut(s) | 320, 345, 458 |
| BstMBI | GATC | 3 cut(s) | 317, 342, 455 |
| BstMCI | CGRYCG | 1 cut(s) | 340 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 22 |
| BstNI | CCWGG | 4 cut(s) | 42, 84, 142, 234 |
| BstNSI | RCATGY | 1 cut(s) | 275 |
| BstSCI | CCNGG | 5 cut(s) | 40, 82, 119, 140, 232 |
| BstV1I | GCAGC | 2 cut(s) | 9, 76 |
| Bsu15I | ATCGAT | 1 cut(s) | 243 |
| BsuI | GTATCC | 1 cut(s) | 311 |
| BsuRI | GGCC | 4 cut(s) | 16, 140, 238, 499 |
| BsuTUI | ATCGAT | 1 cut(s) | 243 |
| BtrI | CACGTC | 1 cut(s) | 391 |
| BtsIMutI | CAGTG | 1 cut(s) | 345 |
| Cfr13I | GGNCC | 3 cut(s) | 138, 236, 498 |
| ClaI | ATCGAT | 1 cut(s) | 243 |
| CseI | GACGC | 1 cut(s) | 413 |
| Csp6I | GTAC | 1 cut(s) | 256 |
| CviAII | CATG | 2 cut(s) | 207, 272 |
| CviJI | RGCY | 8 cut(s) | 16, 22, 140, 145, 181, 238, 429, 499 |
| CviKI_1 | RGCY | 8 cut(s) | 16, 22, 140, 145, 181, 238, 429, 499 |
| CviQI | GTAC | 1 cut(s) | 256 |
| DdeI | CTNAG | 1 cut(s) | 331 |
| DpnI | GATC | 3 cut(s) | 319, 344, 457 |
| DpnII | GATC | 3 cut(s) | 317, 342, 455 |
| EaeI | YGGCCR | 1 cut(s) | 14 |
| Eam1104I | CTCTTC | 1 cut(s) | 329 |
| EarI | CTCTTC | 1 cut(s) | 329 |
| Eco88I | CYCGRG | 1 cut(s) | 311 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 361 |
| EcoRII | CCWGG | 4 cut(s) | 40, 82, 140, 232 |
| FaeI | CATG | 2 cut(s) | 210, 275 |
| FaiI | YATR | 3 cut(s) | 8, 208, 273 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 245, 277 |
| FaqI | GGGAC | 1 cut(s) | 335 |
| FatI | CATG | 2 cut(s) | 206, 271 |
| FbaI | TGATCA | 2 cut(s) | 317, 455 |
| FblI | GTMKAC | 1 cut(s) | 447 |
| Fnu4HI | GCNGC | 2 cut(s) | 23, 65 |
| Fsp4HI | GCNGC | 2 cut(s) | 23, 65 |
| GluI | GCNGC | 2 cut(s) | 23, 65 |
| GsaI | CCCAGC | 1 cut(s) | 98 |
| GsuI | CTGGAG | 2 cut(s) | 368, 506 |
| HaeIII | GGCC | 4 cut(s) | 16, 140, 238, 499 |
| HapII | CCGG | 1 cut(s) | 120 |
| HgaI | GACGC | 1 cut(s) | 413 |
| Hin1II | CATG | 2 cut(s) | 210, 275 |
| HinfI | GANTC | 6 cut(s) | 2, 170, 245, 333, 413, 490 |
| HpaII | CCGG | 1 cut(s) | 120 |
| HphI | GGTGA | 2 cut(s) | 222, 465 |
| Hpy166II | GTNNAC | 1 cut(s) | 448 |
| Hpy188I | TCNGA | 5 cut(s) | 161, 175, 278, 342, 441 |
| Hpy188III | TCNNGA | 4 cut(s) | 311, 373, 401, 459 |
| Hpy8I | GTNNAC | 1 cut(s) | 448 |
| Hpy99I | CGWCG | 2 cut(s) | 395, 407 |
| HpyAV | CCTTC | 1 cut(s) | 488 |
| HpyCH4III | ACNGT | 1 cut(s) | 349 |
| HpyCH4IV | ACGT | 1 cut(s) | 390 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 22 |
| HpyF3I | CTNAG | 1 cut(s) | 331 |
| HpySE526I | ACGT | 1 cut(s) | 390 |
| Hsp92II | CATG | 2 cut(s) | 210, 275 |
| Ksp22I | TGATCA | 2 cut(s) | 317, 455 |
| Kzo9I | GATC | 3 cut(s) | 317, 342, 455 |
| Lsp1109I | GCAGC | 2 cut(s) | 9, 76 |
| MaeII | ACGT | 1 cut(s) | 390 |
| MaeIII | GTNAC | 2 cut(s) | 151, 470 |
| MalI | GATC | 3 cut(s) | 319, 344, 457 |
| MboI | GATC | 3 cut(s) | 317, 342, 455 |
| MboII | GAAGA | 3 cut(s) | 70, 316, 430 |
| MlsI | TGGCCA | 1 cut(s) | 16 |
| MluCI | AATT | 2 cut(s) | 110, 279 |
| MluNI | TGGCCA | 1 cut(s) | 16 |
| MlyI | GAGTC | 1 cut(s) | 342 |
| MmeI | TCCRAC | 2 cut(s) | 198, 320 |
| MnlI | CCTC | 5 cut(s) | 357, 364, 367, 392, 408 |
| Mox20I | TGGCCA | 1 cut(s) | 16 |
| MscI | TGGCCA | 1 cut(s) | 16 |
| MseI | TTAA | 2 cut(s) | 368, 518 |
| Msp20I | TGGCCA | 1 cut(s) | 16 |
| MspA1I | CMGCKG | 1 cut(s) | 22 |
| MspI | CCGG | 1 cut(s) | 120 |
| MspR9I | CCNGG | 5 cut(s) | 42, 84, 121, 142, 234 |
| MvaI | CCWGG | 4 cut(s) | 42, 84, 142, 234 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 22 |
| NciI | CCSGG | 1 cut(s) | 121 |
| NdeII | GATC | 3 cut(s) | 317, 342, 455 |
| NlaIII | CATG | 2 cut(s) | 210, 275 |
| NlaIV | GGNNCC | 2 cut(s) | 46, 139 |
| NmuCI | GTSAC | 1 cut(s) | 151 |
| NspI | RCATGY | 1 cut(s) | 275 |
| NspV | TTCGAA | 2 cut(s) | 54, 416 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 399, 408 |
| PfeI | GAWTC | 5 cut(s) | 2, 170, 245, 413, 490 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 41 |
| PkrI | GCNGC | 2 cut(s) | 24, 66 |
| PleI | GAGTC | 1 cut(s) | 341 |
| PpsI | GAGTC | 1 cut(s) | 341 |
| Psp6I | CCWGG | 4 cut(s) | 40, 82, 140, 232 |
| PspFI | CCCAGC | 1 cut(s) | 94 |
| PspGI | CCWGG | 4 cut(s) | 40, 82, 140, 232 |
| PspN4I | GGNNCC | 2 cut(s) | 46, 139 |
| PspPI | GGNCC | 3 cut(s) | 138, 236, 498 |
| PvuII | CAGCTG | 1 cut(s) | 22 |
| RsaI | GTAC | 1 cut(s) | 257 |
| RsaNI | GTAC | 1 cut(s) | 256 |
| SaqAI | TTAA | 2 cut(s) | 368, 518 |
| SatI | GCNGC | 2 cut(s) | 23, 65 |
| Sau3AI | GATC | 3 cut(s) | 317, 342, 455 |
| Sau96I | GGNCC | 3 cut(s) | 138, 236, 498 |
| SchI | GAGTC | 1 cut(s) | 342 |
| ScrFI | CCNGG | 5 cut(s) | 42, 84, 121, 142, 234 |
| SfuI | TTCGAA | 2 cut(s) | 54, 416 |
| Sse9I | AATT | 2 cut(s) | 110, 279 |
| StyD4I | CCNGG | 5 cut(s) | 40, 82, 119, 140, 232 |
| TaaI | ACNGT | 1 cut(s) | 349 |
| TaiI | ACGT | 1 cut(s) | 393 |
| TaqI | TCGA | 5 cut(s) | 54, 243, 402, 411, 416 |
| TaqII | GACCGA | 1 cut(s) | 326 |
| TasI | AATT | 2 cut(s) | 110, 279 |
| TfiI | GAWTC | 5 cut(s) | 2, 170, 245, 413, 490 |
| Tru1I | TTAA | 2 cut(s) | 368, 518 |
| Tru9I | TTAA | 2 cut(s) | 368, 518 |
| TscAI | CASTG | 1 cut(s) | 352 |
| TseFI | GTSAC | 1 cut(s) | 151 |
| TseI | GCWGC | 2 cut(s) | 22, 64 |
| Tsp45I | GTSAC | 1 cut(s) | 151 |
| TspDTI | ATGAA | 1 cut(s) | 64 |
| TspRI | CASTG | 1 cut(s) | 352 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 41 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 361 |
| XapI | RAATTY | 2 cut(s) | 110, 279 |
| XceI | RCATGY | 1 cut(s) | 275 |
| XmiI | GTMKAC | 1 cut(s) | 447 |