ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 628 |
| AccIII | TCCGGA | 1 cut(s) | 742 |
| AciI | CCGC | 1 cut(s) | 53 |
| AclWI | GGATC | 1 cut(s) | 396 |
| AcoI | YGGCCR | 1 cut(s) | 54 |
| AcuI | CTGAAG | 2 cut(s) | 323, 712 |
| AcyI | GRCGYC | 1 cut(s) | 625 |
| AfaI | GTAC | 3 cut(s) | 112, 118, 207 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 202, 323, 385, 742, 763, 793 |
| AflII | CTTAAG | 1 cut(s) | 572 |
| AgsI | TTSAA | 3 cut(s) | 84, 257, 514 |
| AjnI | CCWGG | 1 cut(s) | 305 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 750, 782 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 538, 570 |
| AluBI | AGCT | 4 cut(s) | 20, 343, 614, 732 |
| AluI | AGCT | 4 cut(s) | 20, 343, 614, 732 |
| Alw26I | GTCTC | 3 cut(s) | 530, 541, 744 |
| AlwI | GGATC | 1 cut(s) | 396 |
| Ama87I | CYCGRG | 2 cut(s) | 150, 786 |
| Aor13HI | TCCGGA | 1 cut(s) | 742 |
| AoxI | GGCC | 3 cut(s) | 54, 303, 753 |
| ApeKI | GCWGC | 1 cut(s) | 217 |
| AseI | ATTAAT | 1 cut(s) | 159 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 725 |
| AspLEI | GCGC | 1 cut(s) | 563 |
| AspS9I | GGNCC | 1 cut(s) | 754 |
| AsuC2I | CCSGG | 2 cut(s) | 151, 152 |
| AsuHPI | GGTGA | 2 cut(s) | 166, 593 |
| AvaI | CYCGRG | 2 cut(s) | 150, 786 |
| BaeGI | GKGCMC | 2 cut(s) | 274, 371 |
| BanII | GRGCYC | 1 cut(s) | 439 |
| BbvI | GCAGC | 1 cut(s) | 229 |
| BccI | CCATC | 2 cut(s) | 572, 689 |
| BcgI | CGANNNNNNTGC | 3 cut(s) | 27, 114, 148 |
| BciT130I | CCWGG | 1 cut(s) | 307 |
| BciVI | GTATCC | 1 cut(s) | 323 |
| BcnI | CCSGG | 2 cut(s) | 151, 152 |
| BcoDI | GTCTC | 3 cut(s) | 530, 541, 744 |
| BfaI | CTAG | 3 cut(s) | 171, 380, 707 |
| BfmI | CTRYAG | 2 cut(s) | 455, 777 |
| BfrI | CTTAAG | 1 cut(s) | 572 |
| BfuI | GTATCC | 1 cut(s) | 323 |
| BisI | GCNGC | 2 cut(s) | 54, 218 |
| BlsI | GCNGC | 2 cut(s) | 55, 219 |
| Bme1390I | CCNGG | 3 cut(s) | 151, 152, 307 |
| BmeT110I | CYCGRG | 2 cut(s) | 150, 786 |
| BmgT120I | GGNCC | 1 cut(s) | 754 |
| BmrFI | CCNGG | 3 cut(s) | 151, 152, 307 |
| BmrI | ACTGGG | 1 cut(s) | 730 |
| BmsI | GCATC | 1 cut(s) | 436 |
| BmuI | ACTGGG | 1 cut(s) | 730 |
| BpmI | CTGGAG | 1 cut(s) | 328 |
| BpuMI | CCSGG | 2 cut(s) | 151, 152 |
| BsaBI | GATNNNNATC | 1 cut(s) | 387 |
| BsaHI | GRCGYC | 1 cut(s) | 625 |
| BsaJI | CCNNGG | 2 cut(s) | 150, 681 |
| BsaWI | WCCGGW | 2 cut(s) | 585, 742 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 103, 133, 538, 568, 575, 605 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 202, 323, 385, 742, 763, 793 |
| Bse1I | ACTGG | 3 cut(s) | 105, 447, 736 |
| Bse3DI | GCAATG | 2 cut(s) | 217, 480 |
| Bse8I | GATNNNNATC | 1 cut(s) | 387 |
| BseAI | TCCGGA | 1 cut(s) | 742 |
| BseBI | CCWGG | 1 cut(s) | 307 |
| BseDI | CCNNGG | 2 cut(s) | 150, 681 |
| BseGI | GGATG | 4 cut(s) | 166, 451, 583, 751 |
| BseJI | GATNNNNATC | 1 cut(s) | 387 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 202, 323, 385, 742, 763, 793 |
| BseMI | GCAATG | 2 cut(s) | 217, 480 |
| BseNI | ACTGG | 3 cut(s) | 105, 447, 736 |
| BseRI | GAGGAG | 2 cut(s) | 185, 314 |
| BseSI | GKGCMC | 2 cut(s) | 274, 371 |
| BseX3I | CGGCCG | 1 cut(s) | 54 |
| BseXI | GCAGC | 1 cut(s) | 229 |
| BseYI | CCCAGC | 1 cut(s) | 364 |
| BsgI | GTGCAG | 1 cut(s) | 770 |
| Bsh1285I | CGRYCG | 1 cut(s) | 57 |
| BshFI | GGCC | 3 cut(s) | 56, 305, 755 |
| BsiEI | CGRYCG | 1 cut(s) | 57 |
| BsiHKCI | CYCGRG | 2 cut(s) | 150, 786 |
| BsiSI | CCGG | 4 cut(s) | 57, 151, 586, 743 |
| BslFI | GGGAC | 3 cut(s) | 173, 660, 679 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 202, 323, 385, 742, 763, 793 |
| BsmAI | GTCTC | 3 cut(s) | 530, 541, 744 |
| BsmBI | CGTCTC | 1 cut(s) | 530 |
| BsmFI | GGGAC | 3 cut(s) | 173, 660, 679 |
| BsnI | GGCC | 3 cut(s) | 56, 305, 755 |
| BsoBI | CYCGRG | 2 cut(s) | 150, 786 |
| Bsp1286I | GDGCHC | 3 cut(s) | 274, 371, 439 |
| Bsp13I | TCCGGA | 1 cut(s) | 742 |
| Bsp143I | GATC | 2 cut(s) | 176, 388 |
| BspACI | CCGC | 1 cut(s) | 53 |
| BspANI | GGCC | 3 cut(s) | 56, 305, 755 |
| BspEI | TCCGGA | 1 cut(s) | 742 |
| BspPI | GGATC | 1 cut(s) | 396 |
| BspTI | CTTAAG | 1 cut(s) | 572 |
| BsrDI | GCAATG | 2 cut(s) | 217, 480 |
| BsrI | ACTGG | 3 cut(s) | 105, 447, 736 |
| BssECI | CCNNGG | 2 cut(s) | 150, 681 |
| BssMI | GATC | 2 cut(s) | 176, 388 |
| BssNI | GRCGYC | 1 cut(s) | 625 |
| BssT1I | CCWWGG | 1 cut(s) | 681 |
| Bst2UI | CCWGG | 1 cut(s) | 307 |
| Bst4CI | ACNGT | 2 cut(s) | 397, 476 |
| Bst6I | CTCTTC | 1 cut(s) | 252 |
| BstACI | GRCGYC | 1 cut(s) | 625 |
| BstAFI | CTTAAG | 1 cut(s) | 572 |
| BstC8I | GCNNGC | 2 cut(s) | 6, 753 |
| BstEII | GGTNACC | 1 cut(s) | 581 |
| BstENI | CCTNNNNNAGG | 2 cut(s) | 200, 321 |
| BstF5I | GGATG | 4 cut(s) | 166, 451, 583, 751 |
| BstHHI | GCGC | 1 cut(s) | 563 |
| BstKTI | GATC | 2 cut(s) | 179, 391 |
| BstMAI | GTCTC | 3 cut(s) | 530, 541, 744 |
| BstMBI | GATC | 2 cut(s) | 176, 388 |
| BstMCI | CGRYCG | 1 cut(s) | 57 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 434, 502 |
| BstNI | CCWGG | 1 cut(s) | 307 |
| BstPI | GGTNACC | 1 cut(s) | 581 |
| BstSCI | CCNGG | 3 cut(s) | 149, 150, 305 |
| BstSFI | CTRYAG | 2 cut(s) | 455, 777 |
| BstSLI | GKGCMC | 2 cut(s) | 274, 371 |
| BstV1I | GCAGC | 1 cut(s) | 229 |
| BstZI | CGGCCG | 1 cut(s) | 54 |
| BsuI | GTATCC | 1 cut(s) | 323 |
| BsuRI | GGCC | 3 cut(s) | 56, 305, 755 |
| BtsCI | GGATG | 4 cut(s) | 166, 451, 583, 751 |
| BtsIMutI | CAGTG | 1 cut(s) | 481 |
| Cac8I | GCNNGC | 2 cut(s) | 6, 753 |
| CfoI | GCGC | 1 cut(s) | 563 |
| Cfr13I | GGNCC | 1 cut(s) | 754 |
| Cfr9I | CCCGGG | 1 cut(s) | 150 |
| CseI | GACGC | 1 cut(s) | 665 |
| Csp6I | GTAC | 3 cut(s) | 111, 117, 206 |
| CviAII | CATG | 6 cut(s) | 72, 126, 185, 227, 275, 669 |
| CviQI | GTAC | 3 cut(s) | 111, 117, 206 |
| DpnI | GATC | 2 cut(s) | 178, 390 |
| DpnII | GATC | 2 cut(s) | 176, 388 |
| EaeI | YGGCCR | 1 cut(s) | 54 |
| EagI | CGGCCG | 1 cut(s) | 54 |
| Eam1104I | CTCTTC | 1 cut(s) | 252 |
| EarI | CTCTTC | 1 cut(s) | 252 |
| EclXI | CGGCCG | 1 cut(s) | 54 |
| Eco130I | CCWWGG | 1 cut(s) | 681 |
| Eco147I | AGGCCT | 1 cut(s) | 305 |
| Eco24I | GRGCYC | 1 cut(s) | 439 |
| Eco52I | CGGCCG | 1 cut(s) | 54 |
| Eco57I | CTGAAG | 2 cut(s) | 323, 712 |
| Eco88I | CYCGRG | 2 cut(s) | 150, 786 |
| Eco91I | GGTNACC | 1 cut(s) | 581 |
| EcoNI | CCTNNNNNAGG | 2 cut(s) | 200, 321 |
| EcoO65I | GGTNACC | 1 cut(s) | 581 |
| EcoRII | CCWGG | 1 cut(s) | 305 |
| EcoT14I | CCWWGG | 1 cut(s) | 681 |
| EcoT38I | GRGCYC | 1 cut(s) | 439 |
| ErhI | CCWWGG | 1 cut(s) | 681 |
| Esp3I | CGTCTC | 1 cut(s) | 530 |
| FaeI | CATG | 6 cut(s) | 75, 129, 188, 230, 278, 672 |
| FaqI | GGGAC | 3 cut(s) | 173, 660, 679 |
| FatI | CATG | 6 cut(s) | 71, 125, 184, 226, 274, 668 |
| Fnu4HI | GCNGC | 2 cut(s) | 54, 218 |
| FokI | GGATG | 4 cut(s) | 153, 458, 590, 758 |
| FriOI | GRGCYC | 1 cut(s) | 439 |
| Fsp4HI | GCNGC | 2 cut(s) | 54, 218 |
| FspBI | CTAG | 3 cut(s) | 171, 380, 707 |
| GlaI | GCGC | 1 cut(s) | 562 |
| GluI | GCNGC | 2 cut(s) | 54, 218 |
| GsaI | CCCAGC | 1 cut(s) | 368 |
| GsuI | CTGGAG | 1 cut(s) | 328 |
| HaeIII | GGCC | 3 cut(s) | 56, 305, 755 |
| HapII | CCGG | 4 cut(s) | 57, 151, 586, 743 |
| HgaI | GACGC | 1 cut(s) | 665 |
| HhaI | GCGC | 1 cut(s) | 563 |
| Hin1I | GRCGYC | 1 cut(s) | 625 |
| Hin1II | CATG | 6 cut(s) | 75, 129, 188, 230, 278, 672 |
| Hin6I | GCGC | 1 cut(s) | 561 |
| HinP1I | GCGC | 1 cut(s) | 561 |
| HindIII | AAGCTT | 2 cut(s) | 18, 612 |
| HinfI | GANTC | 4 cut(s) | 80, 329, 677, 761 |
| HpaII | CCGG | 4 cut(s) | 57, 151, 586, 743 |
| HphI | GGTGA | 2 cut(s) | 166, 593 |
| Hpy166II | GTNNAC | 1 cut(s) | 69 |
| Hpy188I | TCNGA | 4 cut(s) | 28, 136, 181, 720 |
| Hpy188III | TCNNGA | 2 cut(s) | 14, 743 |
| Hpy8I | GTNNAC | 1 cut(s) | 69 |
| Hpy99I | CGWCG | 2 cut(s) | 243, 627 |
| HpyAV | CCTTC | 3 cut(s) | 272, 317, 405 |
| HpyCH4III | ACNGT | 2 cut(s) | 397, 476 |
| HpyCH4IV | ACGT | 2 cut(s) | 539, 625 |
| HpyCH4V | TGCA | 3 cut(s) | 4, 125, 751 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 434, 502 |
| HpySE526I | ACGT | 2 cut(s) | 539, 625 |
| Hsp92I | GRCGYC | 1 cut(s) | 625 |
| Hsp92II | CATG | 6 cut(s) | 75, 129, 188, 230, 278, 672 |
| HspAI | GCGC | 1 cut(s) | 561 |
| Kpn2I | TCCGGA | 1 cut(s) | 742 |
| Kzo9I | GATC | 2 cut(s) | 176, 388 |
| LmnI | GCTCC | 2 cut(s) | 490, 737 |
| Lsp1109I | GCAGC | 1 cut(s) | 229 |
| LweI | GCATC | 1 cut(s) | 436 |
| MaeI | CTAG | 3 cut(s) | 171, 380, 707 |
| MaeII | ACGT | 2 cut(s) | 539, 625 |
| MaeIII | GTNAC | 2 cut(s) | 476, 581 |
| MalI | GATC | 2 cut(s) | 178, 390 |
| MboI | GATC | 2 cut(s) | 176, 388 |
| MboII | GAAGA | 3 cut(s) | 155, 269, 718 |
| MhlI | GDGCHC | 3 cut(s) | 274, 371, 439 |
| MluCI | AATT | 1 cut(s) | 34 |
| MlyI | GAGTC | 2 cut(s) | 338, 755 |
| MmeI | TCCRAC | 1 cut(s) | 6 |
| MnlI | CCTC | 9 cut(s) | 53, 196, 201, 206, 292, 295, 409, 418, 703 |
| MroI | TCCGGA | 1 cut(s) | 742 |
| MroXI | GAANNNNTTC | 1 cut(s) | 725 |
| MseI | TTAA | 4 cut(s) | 159, 357, 573, 642 |
| MspCI | CTTAAG | 1 cut(s) | 572 |
| MspI | CCGG | 4 cut(s) | 57, 151, 586, 743 |
| MspR9I | CCNGG | 3 cut(s) | 151, 152, 307 |
| MvaI | CCWGG | 1 cut(s) | 307 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 434, 502 |
| NciI | CCSGG | 2 cut(s) | 151, 152 |
| NdeII | GATC | 2 cut(s) | 176, 388 |
| NlaIII | CATG | 6 cut(s) | 75, 129, 188, 230, 278, 672 |
| NmuCI | GTSAC | 2 cut(s) | 476, 581 |
| PceI | AGGCCT | 1 cut(s) | 305 |
| PdmI | GAANNNNTTC | 1 cut(s) | 725 |
| PfeI | GAWTC | 2 cut(s) | 80, 677 |
| PflFI | GACNNNGTC | 1 cut(s) | 185 |
| PkrI | GCNGC | 2 cut(s) | 55, 219 |
| PleI | GAGTC | 2 cut(s) | 337, 755 |
| PpsI | GAGTC | 2 cut(s) | 337, 755 |
| PshBI | ATTAAT | 1 cut(s) | 159 |
| Psp6I | CCWGG | 1 cut(s) | 305 |
| PspEI | GGTNACC | 1 cut(s) | 581 |
| PspFI | CCCAGC | 1 cut(s) | 364 |
| PspGI | CCWGG | 1 cut(s) | 305 |
| PspPI | GGNCC | 1 cut(s) | 754 |
| PsyI | GACNNNGTC | 1 cut(s) | 185 |
| RsaI | GTAC | 3 cut(s) | 112, 118, 207 |
| RsaNI | GTAC | 3 cut(s) | 111, 117, 206 |
| SaqAI | TTAA | 4 cut(s) | 159, 357, 573, 642 |
| SatI | GCNGC | 2 cut(s) | 54, 218 |
| Sau3AI | GATC | 2 cut(s) | 176, 388 |
| Sau96I | GGNCC | 1 cut(s) | 754 |
| SchI | GAGTC | 2 cut(s) | 338, 755 |
| ScrFI | CCNGG | 3 cut(s) | 151, 152, 307 |
| SduI | GDGCHC | 3 cut(s) | 274, 371, 439 |
| SfaNI | GCATC | 1 cut(s) | 436 |
| SfcI | CTRYAG | 2 cut(s) | 455, 777 |
| SmaI | CCCGGG | 1 cut(s) | 152 |
| SmlI | CTYRAG | 1 cut(s) | 572 |
| SmoI | CTYRAG | 1 cut(s) | 572 |
| Sse9I | AATT | 1 cut(s) | 34 |
| SseBI | AGGCCT | 1 cut(s) | 305 |
| SsiI | CCGC | 1 cut(s) | 53 |
| SspMI | CTAG | 3 cut(s) | 171, 380, 707 |
| StuI | AGGCCT | 1 cut(s) | 305 |
| StyD4I | CCNGG | 3 cut(s) | 149, 150, 305 |
| StyI | CCWWGG | 1 cut(s) | 681 |
| TaaI | ACNGT | 2 cut(s) | 397, 476 |
| TaiI | ACGT | 2 cut(s) | 542, 628 |
| TaqI | TCGA | 3 cut(s) | 175, 391, 622 |
| TasI | AATT | 1 cut(s) | 34 |
| TatI | WGTACW | 1 cut(s) | 116 |
| TauI | GCSGC | 1 cut(s) | 56 |
| TfiI | GAWTC | 2 cut(s) | 80, 677 |
| Tru1I | TTAA | 4 cut(s) | 159, 357, 573, 642 |
| Tru9I | TTAA | 4 cut(s) | 159, 357, 573, 642 |
| TscAI | CASTG | 1 cut(s) | 481 |
| TseFI | GTSAC | 2 cut(s) | 476, 581 |
| TseI | GCWGC | 1 cut(s) | 217 |
| Tsp45I | GTSAC | 2 cut(s) | 476, 581 |
| TspDTI | ATGAA | 3 cut(s) | 155, 291, 531 |
| TspMI | CCCGGG | 1 cut(s) | 150 |
| TspRI | CASTG | 1 cut(s) | 481 |
| Tth111I | GACNNNGTC | 1 cut(s) | 185 |
| Vha464I | CTTAAG | 1 cut(s) | 572 |
| VspI | ATTAAT | 1 cut(s) | 159 |
| XagI | CCTNNNNNAGG | 2 cut(s) | 200, 321 |
| XmaI | CCCGGG | 1 cut(s) | 150 |
| XmnI | GAANNNNTTC | 1 cut(s) | 725 |
| XspI | CTAG | 3 cut(s) | 171, 380, 707 |
| ZraI | GACGTC | 1 cut(s) | 626 |