ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 648 |
| AccB1I | GGYRCC | 1 cut(s) | 839 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 794 |
| AccI | GTMKAC | 1 cut(s) | 510 |
| AclWI | GGATC | 2 cut(s) | 699, 820 |
| AcsI | RAATTY | 1 cut(s) | 432 |
| AcuI | CTGAAG | 1 cut(s) | 321 |
| AfaI | GTAC | 1 cut(s) | 606 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 714, 794 |
| AgsI | TTSAA | 5 cut(s) | 13, 348, 728, 895, 974 |
| AjnI | CCWGG | 2 cut(s) | 416, 632 |
| AluBI | AGCT | 7 cut(s) | 197, 290, 394, 479, 503, 593, 991 |
| AluI | AGCT | 7 cut(s) | 197, 290, 394, 479, 503, 593, 991 |
| Alw26I | GTCTC | 3 cut(s) | 47, 215, 1001 |
| AlwI | GGATC | 2 cut(s) | 699, 820 |
| AoxI | GGCC | 1 cut(s) | 813 |
| ApeKI | GCWGC | 5 cut(s) | 4, 386, 739, 784, 991 |
| ApoI | RAATTY | 1 cut(s) | 432 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 518, 550, 935, 967 |
| AseI | ATTAAT | 1 cut(s) | 899 |
| AspLEI | GCGC | 1 cut(s) | 448 |
| AspS9I | GGNCC | 1 cut(s) | 461 |
| AsuC2I | CCSGG | 1 cut(s) | 322 |
| AsuHPI | GGTGA | 3 cut(s) | 177, 310, 809 |
| AvaII | GGWCC | 1 cut(s) | 461 |
| BanI | GGYRCC | 1 cut(s) | 839 |
| BbsI | GAAGAC | 1 cut(s) | 239 |
| BbvI | GCAGC | 5 cut(s) | 16, 398, 726, 771, 978 |
| BccI | CCATC | 4 cut(s) | 164, 517, 796, 1007 |
| BciT130I | CCWGG | 2 cut(s) | 418, 634 |
| BciVI | GTATCC | 1 cut(s) | 633 |
| BclI | TGATCA | 1 cut(s) | 664 |
| BcnI | CCSGG | 1 cut(s) | 322 |
| BcoDI | GTCTC | 3 cut(s) | 47, 215, 1001 |
| BfaI | CTAG | 6 cut(s) | 96, 383, 410, 468, 506, 584 |
| BfmI | CTRYAG | 1 cut(s) | 809 |
| BfuAI | ACCTGC | 1 cut(s) | 648 |
| BfuI | GTATCC | 1 cut(s) | 633 |
| BisI | GCNGC | 5 cut(s) | 5, 387, 740, 785, 992 |
| BlsI | GCNGC | 5 cut(s) | 6, 388, 741, 786, 993 |
| Bme1390I | CCNGG | 3 cut(s) | 322, 418, 634 |
| Bme18I | GGWCC | 1 cut(s) | 461 |
| BmgT120I | GGNCC | 1 cut(s) | 461 |
| BmiI | GGNNCC | 1 cut(s) | 841 |
| BmrFI | CCNGG | 3 cut(s) | 322, 418, 634 |
| BmsI | GCATC | 5 cut(s) | 52, 108, 265, 771, 795 |
| BpiI | GAAGAC | 1 cut(s) | 239 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 980, 1012 |
| BpmI | CTGGAG | 1 cut(s) | 244 |
| BpuMI | CCSGG | 1 cut(s) | 322 |
| BsaAI | YACGTR | 1 cut(s) | 363 |
| BsaI | GGTCTC | 1 cut(s) | 215 |
| BsaJI | CCNNGG | 3 cut(s) | 417, 633, 904 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 714, 794 |
| Bse118I | RCCGGY | 1 cut(s) | 836 |
| Bse1I | ACTGG | 1 cut(s) | 799 |
| BseBI | CCWGG | 2 cut(s) | 418, 634 |
| BseDI | CCNNGG | 3 cut(s) | 417, 633, 904 |
| BseGI | GGATG | 2 cut(s) | 786, 922 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 714, 794 |
| BseMII | CTCAG | 2 cut(s) | 494, 667 |
| BseNI | ACTGG | 1 cut(s) | 799 |
| BseXI | GCAGC | 5 cut(s) | 16, 398, 726, 771, 978 |
| BsgI | GTGCAG | 1 cut(s) | 725 |
| BshFI | GGCC | 1 cut(s) | 815 |
| BshNI | GGYRCC | 1 cut(s) | 839 |
| BsiSI | CCGG | 3 cut(s) | 321, 464, 837 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 714, 794 |
| BsmAI | GTCTC | 3 cut(s) | 47, 215, 1001 |
| BsmBI | CGTCTC | 1 cut(s) | 47 |
| BsnI | GGCC | 1 cut(s) | 815 |
| Bso31I | GGTCTC | 1 cut(s) | 215 |
| Bsp1407I | TGTACA | 1 cut(s) | 604 |
| Bsp143I | GATC | 3 cut(s) | 664, 704, 825 |
| BspANI | GGCC | 1 cut(s) | 815 |
| BspCNI | CTCAG | 2 cut(s) | 493, 666 |
| BspLI | GGNNCC | 1 cut(s) | 841 |
| BspMI | ACCTGC | 1 cut(s) | 648 |
| BspPI | GGATC | 2 cut(s) | 699, 820 |
| BspT107I | GGYRCC | 1 cut(s) | 839 |
| BspTNI | GGTCTC | 1 cut(s) | 215 |
| BsrFI | RCCGGY | 1 cut(s) | 836 |
| BsrGI | TGTACA | 1 cut(s) | 604 |
| BsrI | ACTGG | 1 cut(s) | 799 |
| BssAI | RCCGGY | 1 cut(s) | 836 |
| BssECI | CCNNGG | 3 cut(s) | 417, 633, 904 |
| BssMI | GATC | 3 cut(s) | 664, 704, 825 |
| BssT1I | CCWWGG | 1 cut(s) | 904 |
| Bst2UI | CCWGG | 2 cut(s) | 418, 634 |
| Bst4CI | ACNGT | 3 cut(s) | 515, 609, 717 |
| Bst6I | CTCTTC | 1 cut(s) | 224 |
| BstAUI | TGTACA | 1 cut(s) | 604 |
| BstBAI | YACGTR | 1 cut(s) | 363 |
| BstC8I | GCNNGC | 1 cut(s) | 817 |
| BstDEI | CTNAG | 2 cut(s) | 480, 653 |
| BstF5I | GGATG | 2 cut(s) | 786, 922 |
| BstHHI | GCGC | 1 cut(s) | 448 |
| BstKTI | GATC | 3 cut(s) | 667, 707, 828 |
| BstMAI | GTCTC | 3 cut(s) | 47, 215, 1001 |
| BstMBI | GATC | 3 cut(s) | 664, 704, 825 |
| BstNI | CCWGG | 2 cut(s) | 418, 634 |
| BstSCI | CCNGG | 3 cut(s) | 320, 416, 632 |
| BstSFI | CTRYAG | 1 cut(s) | 809 |
| BstV1I | GCAGC | 5 cut(s) | 16, 398, 726, 771, 978 |
| BstV2I | GAAGAC | 1 cut(s) | 239 |
| BstX2I | RGATCY | 1 cut(s) | 825 |
| BstYI | RGATCY | 1 cut(s) | 825 |
| BsuI | GTATCC | 1 cut(s) | 633 |
| BsuRI | GGCC | 1 cut(s) | 815 |
| BtsCI | GGATG | 2 cut(s) | 786, 922 |
| BtsIMutI | CAGTG | 1 cut(s) | 614 |
| BveI | ACCTGC | 1 cut(s) | 648 |
| Cac8I | GCNNGC | 1 cut(s) | 817 |
| CfoI | GCGC | 1 cut(s) | 448 |
| Cfr10I | RCCGGY | 1 cut(s) | 836 |
| Cfr13I | GGNCC | 1 cut(s) | 461 |
| CseI | GACGC | 2 cut(s) | 64, 233 |
| Csp6I | GTAC | 1 cut(s) | 605 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 439, 474 |
| CviAII | CATG | 2 cut(s) | 529, 860 |
| CviQI | GTAC | 1 cut(s) | 605 |
| DdeI | CTNAG | 2 cut(s) | 480, 653 |
| DpnI | GATC | 3 cut(s) | 666, 706, 827 |
| DpnII | GATC | 3 cut(s) | 664, 704, 825 |
| Eam1104I | CTCTTC | 1 cut(s) | 224 |
| EarI | CTCTTC | 1 cut(s) | 224 |
| Eco130I | CCWWGG | 1 cut(s) | 904 |
| Eco31I | GGTCTC | 1 cut(s) | 215 |
| Eco47I | GGWCC | 1 cut(s) | 461 |
| Eco57I | CTGAAG | 1 cut(s) | 321 |
| EcoRII | CCWGG | 2 cut(s) | 416, 632 |
| EcoT14I | CCWWGG | 1 cut(s) | 904 |
| ErhI | CCWWGG | 1 cut(s) | 904 |
| Esp3I | CGTCTC | 1 cut(s) | 47 |
| FaeI | CATG | 2 cut(s) | 532, 863 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 51, 83 |
| FatI | CATG | 2 cut(s) | 528, 859 |
| FbaI | TGATCA | 1 cut(s) | 664 |
| FblI | GTMKAC | 1 cut(s) | 510 |
| Fnu4HI | GCNGC | 5 cut(s) | 5, 387, 740, 785, 992 |
| FokI | GGATG | 2 cut(s) | 793, 929 |
| Fsp4HI | GCNGC | 5 cut(s) | 5, 387, 740, 785, 992 |
| FspBI | CTAG | 6 cut(s) | 96, 383, 410, 468, 506, 584 |
| GlaI | GCGC | 1 cut(s) | 447 |
| GluI | GCNGC | 5 cut(s) | 5, 387, 740, 785, 992 |
| GsuI | CTGGAG | 1 cut(s) | 244 |
| HaeIII | GGCC | 1 cut(s) | 815 |
| HapII | CCGG | 3 cut(s) | 321, 464, 837 |
| HgaI | GACGC | 2 cut(s) | 64, 233 |
| HhaI | GCGC | 1 cut(s) | 448 |
| Hin1II | CATG | 2 cut(s) | 532, 863 |
| Hin6I | GCGC | 1 cut(s) | 446 |
| HinP1I | GCGC | 1 cut(s) | 446 |
| HincII | GTYRAC | 1 cut(s) | 511 |
| HindII | GTYRAC | 1 cut(s) | 511 |
| HinfI | GANTC | 8 cut(s) | 9, 216, 235, 315, 367, 549, 800, 944 |
| HpaII | CCGG | 3 cut(s) | 321, 464, 837 |
| HphI | GGTGA | 3 cut(s) | 177, 310, 809 |
| Hpy166II | GTNNAC | 5 cut(s) | 185, 511, 518, 570, 674 |
| Hpy188I | TCNGA | 8 cut(s) | 115, 169, 215, 252, 301, 483, 600, 664 |
| Hpy188III | TCNNGA | 3 cut(s) | 223, 546, 941 |
| Hpy8I | GTNNAC | 5 cut(s) | 185, 511, 518, 570, 674 |
| Hpy99I | CGWCG | 2 cut(s) | 159, 705 |
| HpyAV | CCTTC | 2 cut(s) | 296, 857 |
| HpyCH4III | ACNGT | 3 cut(s) | 515, 609, 717 |
| HpyCH4IV | ACGT | 4 cut(s) | 23, 157, 362, 700 |
| HpyCH4V | TGCA | 5 cut(s) | 4, 263, 278, 742, 769 |
| HpyF3I | CTNAG | 2 cut(s) | 480, 653 |
| HpySE526I | ACGT | 4 cut(s) | 23, 157, 362, 700 |
| Hsp92II | CATG | 2 cut(s) | 532, 863 |
| HspAI | GCGC | 1 cut(s) | 446 |
| Ksp22I | TGATCA | 1 cut(s) | 664 |
| Kzo9I | GATC | 3 cut(s) | 664, 704, 825 |
| LmnI | GCTCC | 1 cut(s) | 287 |
| Lsp1109I | GCAGC | 5 cut(s) | 16, 398, 726, 771, 978 |
| LweI | GCATC | 5 cut(s) | 52, 108, 265, 771, 795 |
| MaeI | CTAG | 6 cut(s) | 96, 383, 410, 468, 506, 584 |
| MaeII | ACGT | 4 cut(s) | 23, 157, 362, 700 |
| MalI | GATC | 3 cut(s) | 666, 706, 827 |
| MboI | GATC | 3 cut(s) | 664, 704, 825 |
| MboII | GAAGA | 3 cut(s) | 211, 239, 740 |
| MflI | RGATCY | 1 cut(s) | 825 |
| MluCI | AATT | 4 cut(s) | 28, 253, 432, 896 |
| MlyI | GAGTC | 2 cut(s) | 210, 938 |
| MmeI | TCCRAC | 2 cut(s) | 853, 894 |
| MnlI | CCTC | 7 cut(s) | 139, 219, 415, 606, 660, 679, 1011 |
| MseI | TTAA | 5 cut(s) | 42, 374, 426, 690, 899 |
| MslI | CAYNNNNRTG | 2 cut(s) | 273, 954 |
| MspI | CCGG | 3 cut(s) | 321, 464, 837 |
| MspR9I | CCNGG | 3 cut(s) | 322, 418, 634 |
| MvaI | CCWGG | 2 cut(s) | 418, 634 |
| NciI | CCSGG | 1 cut(s) | 322 |
| NdeII | GATC | 3 cut(s) | 664, 704, 825 |
| NlaIII | CATG | 2 cut(s) | 532, 863 |
| NlaIV | GGNNCC | 1 cut(s) | 841 |
| PfeI | GAWTC | 6 cut(s) | 9, 235, 315, 367, 549, 800 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 794 |
| PkrI | GCNGC | 5 cut(s) | 6, 388, 741, 786, 993 |
| PleI | GAGTC | 2 cut(s) | 210, 938 |
| PpsI | GAGTC | 2 cut(s) | 210, 938 |
| Ppu21I | YACGTR | 1 cut(s) | 363 |
| PshBI | ATTAAT | 1 cut(s) | 899 |
| Psp6I | CCWGG | 2 cut(s) | 416, 632 |
| PspGI | CCWGG | 2 cut(s) | 416, 632 |
| PspN4I | GGNNCC | 1 cut(s) | 841 |
| PspPI | GGNCC | 1 cut(s) | 461 |
| PsuI | RGATCY | 1 cut(s) | 825 |
| RsaI | GTAC | 1 cut(s) | 606 |
| RsaNI | GTAC | 1 cut(s) | 605 |
| RseI | CAYNNNNRTG | 2 cut(s) | 273, 954 |
| SalI | GTCGAC | 1 cut(s) | 509 |
| SaqAI | TTAA | 5 cut(s) | 42, 374, 426, 690, 899 |
| SatI | GCNGC | 5 cut(s) | 5, 387, 740, 785, 992 |
| Sau3AI | GATC | 3 cut(s) | 664, 704, 825 |
| Sau96I | GGNCC | 1 cut(s) | 461 |
| SchI | GAGTC | 2 cut(s) | 210, 938 |
| ScrFI | CCNGG | 3 cut(s) | 322, 418, 634 |
| SfaNI | GCATC | 5 cut(s) | 52, 108, 265, 771, 795 |
| SfcI | CTRYAG | 1 cut(s) | 809 |
| SinI | GGWCC | 1 cut(s) | 461 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 273, 954 |
| Sse9I | AATT | 4 cut(s) | 28, 253, 432, 896 |
| SspI | AATATT | 3 cut(s) | 76, 358, 763 |
| SspMI | CTAG | 6 cut(s) | 96, 383, 410, 468, 506, 584 |
| StyD4I | CCNGG | 3 cut(s) | 320, 416, 632 |
| StyI | CCWWGG | 1 cut(s) | 904 |
| TaaI | ACNGT | 3 cut(s) | 515, 609, 717 |
| TaiI | ACGT | 4 cut(s) | 26, 160, 365, 703 |
| TaqI | TCGA | 8 cut(s) | 154, 313, 496, 510, 547, 684, 703, 803 |
| TasI | AATT | 4 cut(s) | 28, 253, 432, 896 |
| TatI | WGTACW | 1 cut(s) | 604 |
| TfiI | GAWTC | 6 cut(s) | 9, 235, 315, 367, 549, 800 |
| Tru1I | TTAA | 5 cut(s) | 42, 374, 426, 690, 899 |
| Tru9I | TTAA | 5 cut(s) | 42, 374, 426, 690, 899 |
| TscAI | CASTG | 1 cut(s) | 614 |
| TseI | GCWGC | 5 cut(s) | 4, 386, 739, 784, 991 |
| TspDTI | ATGAA | 4 cut(s) | 140, 444, 876, 941 |
| TspRI | CASTG | 1 cut(s) | 614 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 794 |
| VpaK11BI | GGWCC | 1 cut(s) | 461 |
| VspI | ATTAAT | 1 cut(s) | 899 |
| XapI | RAATTY | 1 cut(s) | 432 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 752 |
| XmiI | GTMKAC | 1 cut(s) | 510 |
| XspI | CTAG | 6 cut(s) | 96, 383, 410, 468, 506, 584 |