ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 157 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 579 |
| AccBSI | CCGCTC | 1 cut(s) | 389 |
| AccIII | TCCGGA | 1 cut(s) | 694 |
| AciI | CCGC | 4 cut(s) | 387, 446, 464, 650 |
| AclWI | GGATC | 5 cut(s) | 141, 167, 427, 581, 594 |
| AcoI | YGGCCR | 1 cut(s) | 384 |
| AcyI | GRCGYC | 1 cut(s) | 154 |
| AfaI | GTAC | 2 cut(s) | 81, 379 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 579 |
| AgsI | TTSAA | 4 cut(s) | 13, 43, 427, 686 |
| AjnI | CCWGG | 4 cut(s) | 301, 362, 381, 554 |
| AluBI | AGCT | 2 cut(s) | 338, 704 |
| AluI | AGCT | 2 cut(s) | 338, 704 |
| Alw21I | GWGCWC | 1 cut(s) | 187 |
| Alw26I | GTCTC | 3 cut(s) | 189, 303, 696 |
| Alw44I | GTGCAC | 1 cut(s) | 183 |
| AlwI | GGATC | 5 cut(s) | 141, 167, 427, 581, 594 |
| Aor13HI | TCCGGA | 1 cut(s) | 694 |
| AoxI | GGCC | 2 cut(s) | 384, 486 |
| ApaLI | GTGCAC | 1 cut(s) | 183 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 518, 550 |
| AspA2I | CCTAGG | 1 cut(s) | 545 |
| AspS9I | GGNCC | 4 cut(s) | 235, 461, 487, 542 |
| AsuHPI | GGTGA | 2 cut(s) | 120, 352 |
| AsuII | TTCGAA | 1 cut(s) | 709 |
| AvaII | GGWCC | 3 cut(s) | 235, 461, 542 |
| AvrII | CCTAGG | 1 cut(s) | 545 |
| BaeGI | GKGCMC | 1 cut(s) | 187 |
| BamHI | GGATCC | 1 cut(s) | 586 |
| Bbv12I | GWGCWC | 1 cut(s) | 187 |
| BccI | CCATC | 1 cut(s) | 164 |
| BciT130I | CCWGG | 4 cut(s) | 303, 364, 383, 556 |
| BclI | TGATCA | 1 cut(s) | 664 |
| BcoDI | GTCTC | 3 cut(s) | 189, 303, 696 |
| BfaI | CTAG | 6 cut(s) | 68, 96, 122, 546, 633, 714 |
| BfmI | CTRYAG | 2 cut(s) | 291, 474 |
| BisI | GCNGC | 1 cut(s) | 387 |
| BlnI | CCTAGG | 1 cut(s) | 545 |
| BlsI | GCNGC | 1 cut(s) | 388 |
| Bme1390I | CCNGG | 4 cut(s) | 303, 364, 383, 556 |
| Bme18I | GGWCC | 3 cut(s) | 235, 461, 542 |
| BmgT120I | GGNCC | 4 cut(s) | 235, 461, 487, 542 |
| BmiI | GGNNCC | 3 cut(s) | 237, 368, 588 |
| BmrFI | CCNGG | 4 cut(s) | 303, 364, 383, 556 |
| BmsI | GCATC | 2 cut(s) | 52, 265 |
| BoxI | GACNNNNGTC | 1 cut(s) | 201 |
| BpmI | CTGGAG | 1 cut(s) | 285 |
| Bpu10I | CCTNAGC | 1 cut(s) | 390 |
| Bpu14I | TTCGAA | 1 cut(s) | 709 |
| Bsa29I | ATCGAT | 1 cut(s) | 273 |
| BsaAI | YACGTR | 1 cut(s) | 377 |
| BsaHI | GRCGYC | 1 cut(s) | 154 |
| BsaI | GGTCTC | 1 cut(s) | 303 |
| BsaJI | CCNNGG | 4 cut(s) | 381, 404, 545, 573 |
| BsaWI | WCCGGW | 2 cut(s) | 130, 694 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 120, 150, 733, 763 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 579 |
| Bse1I | ACTGG | 1 cut(s) | 325 |
| Bse3DI | GCAATG | 2 cut(s) | 614, 667 |
| BseAI | TCCGGA | 1 cut(s) | 694 |
| BseBI | CCWGG | 4 cut(s) | 303, 364, 383, 556 |
| BseCI | ATCGAT | 1 cut(s) | 273 |
| BseDI | CCNNGG | 4 cut(s) | 381, 404, 545, 573 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 579 |
| BseMI | GCAATG | 2 cut(s) | 614, 667 |
| BseMII | CTCAG | 2 cut(s) | 404, 644 |
| BseNI | ACTGG | 1 cut(s) | 325 |
| BseRI | GAGGAG | 2 cut(s) | 668, 754 |
| BseSI | GKGCMC | 1 cut(s) | 187 |
| BshFI | GGCC | 2 cut(s) | 386, 488 |
| BshVI | ATCGAT | 1 cut(s) | 273 |
| BsiHKAI | GWGCWC | 1 cut(s) | 187 |
| BsiSI | CCGG | 2 cut(s) | 131, 695 |
| BslFI | GGGAC | 1 cut(s) | 221 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 579 |
| BsmAI | GTCTC | 3 cut(s) | 189, 303, 696 |
| BsmBI | CGTCTC | 1 cut(s) | 189 |
| BsmFI | GGGAC | 1 cut(s) | 221 |
| BsnI | GGCC | 2 cut(s) | 386, 488 |
| Bso31I | GGTCTC | 1 cut(s) | 303 |
| Bsp119I | TTCGAA | 1 cut(s) | 709 |
| Bsp1286I | GDGCHC | 1 cut(s) | 187 |
| Bsp13I | TCCGGA | 1 cut(s) | 694 |
| Bsp143I | GATC | 5 cut(s) | 133, 159, 432, 586, 664 |
| Bsp19I | CCATGG | 1 cut(s) | 404 |
| BspACI | CCGC | 4 cut(s) | 387, 446, 464, 650 |
| BspANI | GGCC | 2 cut(s) | 386, 488 |
| BspCNI | CTCAG | 2 cut(s) | 403, 645 |
| BspDI | ATCGAT | 1 cut(s) | 273 |
| BspEI | TCCGGA | 1 cut(s) | 694 |
| BspLI | GGNNCC | 3 cut(s) | 237, 368, 588 |
| BspPI | GGATC | 5 cut(s) | 141, 167, 427, 581, 594 |
| BspT104I | TTCGAA | 1 cut(s) | 709 |
| BspTNI | GGTCTC | 1 cut(s) | 303 |
| BsrBI | CCGCTC | 1 cut(s) | 389 |
| BsrDI | GCAATG | 2 cut(s) | 614, 667 |
| BsrI | ACTGG | 1 cut(s) | 325 |
| BssECI | CCNNGG | 4 cut(s) | 381, 404, 545, 573 |
| BssMI | GATC | 5 cut(s) | 133, 159, 432, 586, 664 |
| BssNI | GRCGYC | 1 cut(s) | 154 |
| BssT1I | CCWWGG | 3 cut(s) | 404, 545, 573 |
| Bst2UI | CCWGG | 4 cut(s) | 303, 364, 383, 556 |
| Bst4CI | ACNGT | 1 cut(s) | 766 |
| BstACI | GRCGYC | 1 cut(s) | 154 |
| BstBAI | YACGTR | 1 cut(s) | 377 |
| BstBI | TTCGAA | 1 cut(s) | 709 |
| BstC8I | GCNNGC | 2 cut(s) | 6, 418 |
| BstDEI | CTNAG | 2 cut(s) | 390, 653 |
| BstDSI | CCRYGG | 1 cut(s) | 404 |
| BstKTI | GATC | 5 cut(s) | 136, 162, 435, 589, 667 |
| BstMAI | GTCTC | 3 cut(s) | 189, 303, 696 |
| BstMBI | GATC | 5 cut(s) | 133, 159, 432, 586, 664 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 344, 485 |
| BstNI | CCWGG | 4 cut(s) | 303, 364, 383, 556 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 201 |
| BstSCI | CCNGG | 4 cut(s) | 301, 362, 381, 554 |
| BstSFI | CTRYAG | 2 cut(s) | 291, 474 |
| BstSLI | GKGCMC | 1 cut(s) | 187 |
| BstSNI | TACGTA | 1 cut(s) | 377 |
| BstX2I | RGATCY | 3 cut(s) | 133, 432, 586 |
| BstYI | RGATCY | 3 cut(s) | 133, 432, 586 |
| Bsu15I | ATCGAT | 1 cut(s) | 273 |
| BsuRI | GGCC | 2 cut(s) | 386, 488 |
| BsuTUI | ATCGAT | 1 cut(s) | 273 |
| BtgI | CCRYGG | 1 cut(s) | 404 |
| Cac8I | GCNNGC | 2 cut(s) | 6, 418 |
| Cfr13I | GGNCC | 4 cut(s) | 235, 461, 487, 542 |
| ClaI | ATCGAT | 1 cut(s) | 273 |
| CsiI | ACCWGGT | 1 cut(s) | 554 |
| Csp6I | GTAC | 2 cut(s) | 80, 378 |
| CviAII | CATG | 3 cut(s) | 405, 443, 529 |
| CviQI | GTAC | 2 cut(s) | 80, 378 |
| DdeI | CTNAG | 2 cut(s) | 390, 653 |
| DpnI | GATC | 5 cut(s) | 135, 161, 434, 588, 666 |
| DpnII | GATC | 5 cut(s) | 133, 159, 432, 586, 664 |
| EaeI | YGGCCR | 1 cut(s) | 384 |
| EciI | GGCGGA | 1 cut(s) | 453 |
| Eco105I | TACGTA | 1 cut(s) | 377 |
| Eco130I | CCWWGG | 3 cut(s) | 404, 545, 573 |
| Eco31I | GGTCTC | 1 cut(s) | 303 |
| Eco47I | GGWCC | 3 cut(s) | 235, 461, 542 |
| EcoO109I | RGGNCCY | 1 cut(s) | 235 |
| EcoRII | CCWGG | 4 cut(s) | 301, 362, 381, 554 |
| EcoT14I | CCWWGG | 3 cut(s) | 404, 545, 573 |
| ErhI | CCWWGG | 3 cut(s) | 404, 545, 573 |
| Esp3I | CGTCTC | 1 cut(s) | 189 |
| FaeI | CATG | 3 cut(s) | 408, 446, 532 |
| FaiI | YATR | 8 cut(s) | 270, 330, 406, 444, 476, 530, 758, 760 |
| FaqI | GGGAC | 1 cut(s) | 221 |
| FatI | CATG | 3 cut(s) | 404, 442, 528 |
| FauI | CCCGC | 1 cut(s) | 657 |
| FauNDI | CATATG | 1 cut(s) | 758 |
| FbaI | TGATCA | 1 cut(s) | 664 |
| Fnu4HI | GCNGC | 1 cut(s) | 387 |
| Fsp4HI | GCNGC | 1 cut(s) | 387 |
| FspBI | CTAG | 6 cut(s) | 68, 96, 122, 546, 633, 714 |
| GluI | GCNGC | 1 cut(s) | 387 |
| GsuI | CTGGAG | 1 cut(s) | 285 |
| HaeIII | GGCC | 2 cut(s) | 386, 488 |
| HapII | CCGG | 2 cut(s) | 131, 695 |
| Hin1I | GRCGYC | 1 cut(s) | 154 |
| Hin1II | CATG | 3 cut(s) | 408, 446, 532 |
| HincII | GTYRAC | 1 cut(s) | 86 |
| HindII | GTYRAC | 1 cut(s) | 86 |
| HinfI | GANTC | 4 cut(s) | 349, 492, 534, 698 |
| HpaII | CCGG | 2 cut(s) | 131, 695 |
| HphI | GGTGA | 2 cut(s) | 120, 352 |
| Hpy166II | GTNNAC | 4 cut(s) | 86, 185, 552, 570 |
| Hpy188I | TCNGA | 4 cut(s) | 115, 159, 497, 664 |
| Hpy188III | TCNNGA | 5 cut(s) | 13, 139, 456, 633, 695 |
| Hpy8I | GTNNAC | 4 cut(s) | 86, 185, 552, 570 |
| Hpy99I | CGWCG | 3 cut(s) | 156, 159, 542 |
| HpyAV | CCTTC | 1 cut(s) | 19 |
| HpyCH4III | ACNGT | 1 cut(s) | 766 |
| HpyCH4IV | ACGT | 3 cut(s) | 82, 154, 376 |
| HpyCH4V | TGCA | 5 cut(s) | 4, 33, 185, 278, 607 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 344, 485 |
| HpyF3I | CTNAG | 2 cut(s) | 390, 653 |
| HpySE526I | ACGT | 3 cut(s) | 82, 154, 376 |
| Hsp92I | GRCGYC | 1 cut(s) | 154 |
| Hsp92II | CATG | 3 cut(s) | 408, 446, 532 |
| Kpn2I | TCCGGA | 1 cut(s) | 694 |
| Ksp22I | TGATCA | 1 cut(s) | 664 |
| Kzo9I | GATC | 5 cut(s) | 133, 159, 432, 586, 664 |
| LweI | GCATC | 2 cut(s) | 52, 265 |
| MabI | ACCWGGT | 1 cut(s) | 554 |
| MaeI | CTAG | 6 cut(s) | 68, 96, 122, 546, 633, 714 |
| MaeII | ACGT | 3 cut(s) | 82, 154, 376 |
| MaeIII | GTNAC | 1 cut(s) | 749 |
| MalI | GATC | 5 cut(s) | 135, 161, 434, 588, 666 |
| MbiI | CCGCTC | 1 cut(s) | 389 |
| MboI | GATC | 5 cut(s) | 133, 159, 432, 586, 664 |
| MflI | RGATCY | 3 cut(s) | 133, 432, 586 |
| MhlI | GDGCHC | 1 cut(s) | 187 |
| MluCI | AATT | 2 cut(s) | 522, 724 |
| MlyI | GAGTC | 1 cut(s) | 707 |
| MmeI | TCCRAC | 2 cut(s) | 137, 520 |
| MnlI | CCTC | 9 cut(s) | 136, 154, 226, 446, 452, 477, 684, 689, 732 |
| MroI | TCCGGA | 1 cut(s) | 694 |
| MseI | TTAA | 1 cut(s) | 521 |
| MslI | CAYNNNNRTG | 2 cut(s) | 273, 686 |
| MspA1I | CMGCKG | 2 cut(s) | 652, 704 |
| MspI | CCGG | 2 cut(s) | 131, 695 |
| MspR9I | CCNGG | 4 cut(s) | 303, 364, 383, 556 |
| MvaI | CCWGG | 4 cut(s) | 303, 364, 383, 556 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 344, 485 |
| NcoI | CCATGG | 1 cut(s) | 404 |
| NdeI | CATATG | 1 cut(s) | 758 |
| NdeII | GATC | 5 cut(s) | 133, 159, 432, 586, 664 |
| NlaIII | CATG | 3 cut(s) | 408, 446, 532 |
| NlaIV | GGNNCC | 3 cut(s) | 237, 368, 588 |
| NspV | TTCGAA | 1 cut(s) | 709 |
| PfeI | GAWTC | 3 cut(s) | 349, 492, 534 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 579 |
| PfoI | TCCNGGA | 1 cut(s) | 301 |
| PkrI | GCNGC | 1 cut(s) | 388 |
| PleI | GAGTC | 1 cut(s) | 706 |
| PpsI | GAGTC | 1 cut(s) | 706 |
| Ppu21I | YACGTR | 1 cut(s) | 377 |
| PpuMI | RGGWCCY | 1 cut(s) | 235 |
| PshAI | GACNNNNGTC | 1 cut(s) | 201 |
| Psp5II | RGGWCCY | 1 cut(s) | 235 |
| Psp6I | CCWGG | 4 cut(s) | 301, 362, 381, 554 |
| PspGI | CCWGG | 4 cut(s) | 301, 362, 381, 554 |
| PspN4I | GGNNCC | 3 cut(s) | 237, 368, 588 |
| PspPI | GGNCC | 4 cut(s) | 235, 461, 487, 542 |
| PspPPI | RGGWCCY | 1 cut(s) | 235 |
| PsuI | RGATCY | 3 cut(s) | 133, 432, 586 |
| PvuII | CAGCTG | 1 cut(s) | 704 |
| RsaI | GTAC | 2 cut(s) | 81, 379 |
| RsaNI | GTAC | 2 cut(s) | 80, 378 |
| RseI | CAYNNNNRTG | 2 cut(s) | 273, 686 |
| SaqAI | TTAA | 1 cut(s) | 521 |
| SatI | GCNGC | 1 cut(s) | 387 |
| Sau3AI | GATC | 5 cut(s) | 133, 159, 432, 586, 664 |
| Sau96I | GGNCC | 4 cut(s) | 235, 461, 487, 542 |
| SchI | GAGTC | 1 cut(s) | 707 |
| ScrFI | CCNGG | 4 cut(s) | 303, 364, 383, 556 |
| SduI | GDGCHC | 1 cut(s) | 187 |
| SexAI | ACCWGGT | 1 cut(s) | 554 |
| SfaNI | GCATC | 2 cut(s) | 52, 265 |
| SfcI | CTRYAG | 2 cut(s) | 291, 474 |
| SfuI | TTCGAA | 1 cut(s) | 709 |
| SinI | GGWCC | 3 cut(s) | 235, 461, 542 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 273, 686 |
| SnaBI | TACGTA | 1 cut(s) | 377 |
| Sse9I | AATT | 2 cut(s) | 522, 724 |
| SsiI | CCGC | 4 cut(s) | 387, 446, 464, 650 |
| SspMI | CTAG | 6 cut(s) | 68, 96, 122, 546, 633, 714 |
| StyD4I | CCNGG | 4 cut(s) | 301, 362, 381, 554 |
| StyI | CCWWGG | 3 cut(s) | 404, 545, 573 |
| TaaI | ACNGT | 1 cut(s) | 766 |
| TaiI | ACGT | 3 cut(s) | 85, 157, 379 |
| TaqI | TCGA | 6 cut(s) | 151, 168, 244, 250, 273, 709 |
| TaqII | GACCGA | 1 cut(s) | 530 |
| TasI | AATT | 2 cut(s) | 522, 724 |
| TauI | GCSGC | 1 cut(s) | 389 |
| TfiI | GAWTC | 3 cut(s) | 349, 492, 534 |
| Tru1I | TTAA | 1 cut(s) | 521 |
| Tru9I | TTAA | 1 cut(s) | 521 |
| TspDTI | ATGAA | 1 cut(s) | 386 |
| TspGWI | ACGGA | 1 cut(s) | 65 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 579 |
| VneI | GTGCAC | 1 cut(s) | 183 |
| VpaK11BI | GGWCC | 3 cut(s) | 235, 461, 542 |
| XbaI | TCTAGA | 1 cut(s) | 632 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 580 |
| XmaJI | CCTAGG | 1 cut(s) | 545 |
| XspI | CTAG | 6 cut(s) | 68, 96, 122, 546, 633, 714 |
| ZraI | GACGTC | 1 cut(s) | 155 |