ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 1161 |
| Acc36I | ACCTGC | 1 cut(s) | 889 |
| Acc65I | GGTACC | 1 cut(s) | 849 |
| AccB1I | GGYRCC | 2 cut(s) | 820, 849 |
| AccI | GTMKAC | 1 cut(s) | 181 |
| AccII | CGCG | 1 cut(s) | 1289 |
| AccIII | TCCGGA | 1 cut(s) | 496 |
| AciI | CCGC | 4 cut(s) | 201, 359, 448, 1289 |
| AcsI | RAATTY | 4 cut(s) | 113, 136, 578, 1116 |
| AcyI | GRCGYC | 1 cut(s) | 947 |
| AdeI | CACNNNGTG | 1 cut(s) | 1073 |
| AfaI | GTAC | 2 cut(s) | 851, 1252 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 184, 512, 868, 1025, 1045, 1456 |
| AflII | CTTAAG | 1 cut(s) | 830 |
| AgeI | ACCGGT | 1 cut(s) | 1156 |
| AgsI | TTSAA | 9 cut(s) | 59, 120, 141, 163, 325, 680, 816, 1130, 1427 |
| AluBI | AGCT | 3 cut(s) | 480, 494, 1295 |
| AluI | AGCT | 3 cut(s) | 480, 494, 1295 |
| Alw26I | GTCTC | 6 cut(s) | 168, 346, 489, 991, 1027, 1067 |
| Aor13HI | TCCGGA | 1 cut(s) | 496 |
| ApeKI | GCWGC | 1 cut(s) | 1295 |
| ApoI | RAATTY | 4 cut(s) | 113, 136, 578, 1116 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 594, 626 |
| AsiGI | ACCGGT | 1 cut(s) | 1156 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 413 |
| Asp718I | GGTACC | 1 cut(s) | 849 |
| AspS9I | GGNCC | 2 cut(s) | 502, 1226 |
| AsuC2I | CCSGG | 1 cut(s) | 951 |
| AsuHPI | GGTGA | 3 cut(s) | 32, 1003, 1171 |
| AvaII | GGWCC | 2 cut(s) | 502, 1226 |
| BanI | GGYRCC | 2 cut(s) | 820, 849 |
| BanII | GRGCYC | 1 cut(s) | 803 |
| BbsI | GAAGAC | 3 cut(s) | 401, 607, 1452 |
| BbvI | GCAGC | 1 cut(s) | 1282 |
| BccI | CCATC | 4 cut(s) | 164, 218, 281, 734 |
| BceAI | ACGGC | 2 cut(s) | 322, 846 |
| BclI | TGATCA | 1 cut(s) | 646 |
| BcnI | CCSGG | 1 cut(s) | 951 |
| BcoDI | GTCTC | 6 cut(s) | 168, 346, 489, 991, 1027, 1067 |
| BfaI | CTAG | 2 cut(s) | 468, 825 |
| BfrI | CTTAAG | 1 cut(s) | 830 |
| BfuAI | ACCTGC | 1 cut(s) | 889 |
| BisI | GCNGC | 1 cut(s) | 1296 |
| BlsI | GCNGC | 1 cut(s) | 1297 |
| Bme1390I | CCNGG | 1 cut(s) | 951 |
| Bme18I | GGWCC | 2 cut(s) | 502, 1226 |
| BmgT120I | GGNCC | 2 cut(s) | 502, 1226 |
| BmiI | GGNNCC | 3 cut(s) | 504, 822, 851 |
| BmrFI | CCNGG | 1 cut(s) | 951 |
| BmrI | ACTGGG | 1 cut(s) | 139 |
| BmsI | GCATC | 1 cut(s) | 952 |
| BmuI | ACTGGG | 1 cut(s) | 139 |
| BpiI | GAAGAC | 3 cut(s) | 401, 607, 1452 |
| BpmI | CTGGAG | 2 cut(s) | 675, 807 |
| BpuMI | CCSGG | 1 cut(s) | 951 |
| BsaAI | YACGTR | 1 cut(s) | 344 |
| BsaHI | GRCGYC | 1 cut(s) | 947 |
| BsaI | GGTCTC | 2 cut(s) | 168, 489 |
| BsaJI | CCNNGG | 1 cut(s) | 950 |
| BsaWI | WCCGGW | 2 cut(s) | 496, 1156 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 885, 915, 1234, 1264 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 184, 512, 868, 1025, 1045, 1456 |
| Bse118I | RCCGGY | 1 cut(s) | 1156 |
| Bse1I | ACTGG | 6 cut(s) | 134, 360, 444, 790, 883, 1006 |
| Bse3DI | GCAATG | 1 cut(s) | 972 |
| BseAI | TCCGGA | 1 cut(s) | 496 |
| BseDI | CCNNGG | 1 cut(s) | 950 |
| BseGI | GGATG | 2 cut(s) | 745, 1339 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 184, 512, 868, 1025, 1045, 1456 |
| BseMI | GCAATG | 1 cut(s) | 972 |
| BseMII | CTCAG | 2 cut(s) | 324, 816 |
| BseNI | ACTGG | 6 cut(s) | 134, 360, 444, 790, 883, 1006 |
| BseRI | GAGGAG | 2 cut(s) | 81, 585 |
| BseXI | GCAGC | 1 cut(s) | 1282 |
| BsgI | GTGCAG | 1 cut(s) | 1161 |
| Bsh1236I | CGCG | 1 cut(s) | 1289 |
| BshNI | GGYRCC | 2 cut(s) | 820, 849 |
| BshTI | ACCGGT | 1 cut(s) | 1156 |
| BsiSI | CCGG | 3 cut(s) | 497, 950, 1157 |
| BslFI | GGGAC | 5 cut(s) | 241, 488, 745, 796, 1472 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 184, 512, 868, 1025, 1045, 1456 |
| BsmAI | GTCTC | 6 cut(s) | 168, 346, 489, 991, 1027, 1067 |
| BsmBI | CGTCTC | 1 cut(s) | 1067 |
| BsmFI | GGGAC | 5 cut(s) | 241, 488, 745, 796, 1472 |
| Bso31I | GGTCTC | 2 cut(s) | 168, 489 |
| Bsp1286I | GDGCHC | 1 cut(s) | 803 |
| Bsp13I | TCCGGA | 1 cut(s) | 496 |
| Bsp143I | GATC | 2 cut(s) | 646, 720 |
| BspACI | CCGC | 4 cut(s) | 201, 359, 448, 1289 |
| BspCNI | CTCAG | 2 cut(s) | 325, 815 |
| BspEI | TCCGGA | 1 cut(s) | 496 |
| BspFNI | CGCG | 1 cut(s) | 1289 |
| BspLI | GGNNCC | 3 cut(s) | 504, 822, 851 |
| BspMI | ACCTGC | 1 cut(s) | 889 |
| BspT107I | GGYRCC | 2 cut(s) | 820, 849 |
| BspTI | CTTAAG | 1 cut(s) | 830 |
| BspTNI | GGTCTC | 2 cut(s) | 168, 489 |
| BsrDI | GCAATG | 1 cut(s) | 972 |
| BsrFI | RCCGGY | 1 cut(s) | 1156 |
| BsrI | ACTGG | 6 cut(s) | 134, 360, 444, 790, 883, 1006 |
| BssAI | RCCGGY | 1 cut(s) | 1156 |
| BssECI | CCNNGG | 1 cut(s) | 950 |
| BssMI | GATC | 2 cut(s) | 646, 720 |
| BssNI | GRCGYC | 1 cut(s) | 947 |
| Bst4CI | ACNGT | 4 cut(s) | 38, 179, 373, 1255 |
| Bst6I | CTCTTC | 2 cut(s) | 1125, 1365 |
| BstACI | GRCGYC | 1 cut(s) | 947 |
| BstAFI | CTTAAG | 1 cut(s) | 830 |
| BstBAI | YACGTR | 1 cut(s) | 344 |
| BstC8I | GCNNGC | 3 cut(s) | 205, 884, 1345 |
| BstDEI | CTNAG | 5 cut(s) | 333, 405, 724, 802, 1151 |
| BstF5I | GGATG | 2 cut(s) | 745, 1339 |
| BstFNI | CGCG | 1 cut(s) | 1289 |
| BstKTI | GATC | 2 cut(s) | 649, 723 |
| BstMAI | GTCTC | 6 cut(s) | 168, 346, 489, 991, 1027, 1067 |
| BstMBI | GATC | 2 cut(s) | 646, 720 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 1295 |
| BstNSI | RCATGY | 1 cut(s) | 929 |
| BstSCI | CCNGG | 1 cut(s) | 949 |
| BstSNI | TACGTA | 1 cut(s) | 344 |
| BstUI | CGCG | 1 cut(s) | 1289 |
| BstV1I | GCAGC | 1 cut(s) | 1282 |
| BstV2I | GAAGAC | 3 cut(s) | 401, 607, 1452 |
| BtsCI | GGATG | 2 cut(s) | 745, 1339 |
| BtsI | GCAGTG | 1 cut(s) | 79 |
| BtsIMutI | CAGTG | 1 cut(s) | 79 |
| BveI | ACCTGC | 1 cut(s) | 889 |
| Cac8I | GCNNGC | 3 cut(s) | 205, 884, 1345 |
| Cfr10I | RCCGGY | 1 cut(s) | 1156 |
| Cfr13I | GGNCC | 2 cut(s) | 502, 1226 |
| CseI | GACGC | 1 cut(s) | 955 |
| Csp6I | GTAC | 2 cut(s) | 850, 1251 |
| CspAI | ACCGGT | 1 cut(s) | 1156 |
| CspCI | CAANNNNNGTGG | 4 cut(s) | 531, 566, 871, 906 |
| CviAII | CATG | 3 cut(s) | 926, 1044, 1319 |
| CviQI | GTAC | 2 cut(s) | 850, 1251 |
| DdeI | CTNAG | 5 cut(s) | 333, 405, 724, 802, 1151 |
| DpnI | GATC | 2 cut(s) | 648, 722 |
| DpnII | GATC | 2 cut(s) | 646, 720 |
| DraIII | CACNNNGTG | 1 cut(s) | 1073 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 1161 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 1161 |
| Eam1104I | CTCTTC | 2 cut(s) | 1125, 1365 |
| EarI | CTCTTC | 2 cut(s) | 1125, 1365 |
| EciI | GGCGGA | 1 cut(s) | 190 |
| Eco105I | TACGTA | 1 cut(s) | 344 |
| Eco24I | GRGCYC | 1 cut(s) | 803 |
| Eco31I | GGTCTC | 2 cut(s) | 168, 489 |
| Eco47I | GGWCC | 2 cut(s) | 502, 1226 |
| EcoO109I | RGGNCCY | 1 cut(s) | 502 |
| EcoRI | GAATTC | 1 cut(s) | 136 |
| EcoT38I | GRGCYC | 1 cut(s) | 803 |
| Esp3I | CGTCTC | 1 cut(s) | 1067 |
| FaeI | CATG | 3 cut(s) | 929, 1047, 1322 |
| FaqI | GGGAC | 5 cut(s) | 241, 488, 745, 796, 1472 |
| FatI | CATG | 3 cut(s) | 925, 1043, 1318 |
| FauI | CCCGC | 1 cut(s) | 352 |
| FauNDI | CATATG | 1 cut(s) | 1329 |
| FbaI | TGATCA | 1 cut(s) | 646 |
| FblI | GTMKAC | 1 cut(s) | 181 |
| Fnu4HI | GCNGC | 1 cut(s) | 1296 |
| FokI | GGATG | 2 cut(s) | 752, 1346 |
| FriOI | GRGCYC | 1 cut(s) | 803 |
| Fsp4HI | GCNGC | 1 cut(s) | 1296 |
| FspBI | CTAG | 2 cut(s) | 468, 825 |
| GluI | GCNGC | 1 cut(s) | 1296 |
| GsuI | CTGGAG | 2 cut(s) | 675, 807 |
| HapII | CCGG | 3 cut(s) | 497, 950, 1157 |
| HgaI | GACGC | 1 cut(s) | 955 |
| Hin1I | GRCGYC | 1 cut(s) | 947 |
| Hin1II | CATG | 3 cut(s) | 929, 1047, 1322 |
| HincII | GTYRAC | 1 cut(s) | 661 |
| HindII | GTYRAC | 1 cut(s) | 661 |
| HinfI | GANTC | 4 cut(s) | 309, 463, 662, 1162 |
| HpaII | CCGG | 3 cut(s) | 497, 950, 1157 |
| HphI | GGTGA | 3 cut(s) | 32, 1003, 1171 |
| Hpy166II | GTNNAC | 3 cut(s) | 182, 661, 761 |
| Hpy188I | TCNGA | 7 cut(s) | 169, 252, 314, 334, 535, 805, 1261 |
| Hpy188III | TCNNGA | 3 cut(s) | 88, 497, 654 |
| Hpy8I | GTNNAC | 3 cut(s) | 182, 661, 761 |
| Hpy99I | CGWCG | 1 cut(s) | 1062 |
| HpyAV | CCTTC | 1 cut(s) | 169 |
| HpyCH4III | ACNGT | 4 cut(s) | 38, 179, 373, 1255 |
| HpyCH4IV | ACGT | 4 cut(s) | 343, 704, 1057, 1461 |
| HpyCH4V | TGCA | 6 cut(s) | 716, 925, 965, 1142, 1202, 1298 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 1295 |
| HpyF3I | CTNAG | 5 cut(s) | 333, 405, 724, 802, 1151 |
| HpySE526I | ACGT | 4 cut(s) | 343, 704, 1057, 1461 |
| Hsp92I | GRCGYC | 1 cut(s) | 947 |
| Hsp92II | CATG | 3 cut(s) | 929, 1047, 1322 |
| Kpn2I | TCCGGA | 1 cut(s) | 496 |
| KpnI | GGTACC | 1 cut(s) | 853 |
| Ksp22I | TGATCA | 1 cut(s) | 646 |
| Kzo9I | GATC | 2 cut(s) | 646, 720 |
| LmnI | GCTCC | 1 cut(s) | 499 |
| Lsp1109I | GCAGC | 1 cut(s) | 1282 |
| LweI | GCATC | 1 cut(s) | 952 |
| MaeI | CTAG | 2 cut(s) | 468, 825 |
| MaeII | ACGT | 4 cut(s) | 343, 704, 1057, 1461 |
| MaeIII | GTNAC | 3 cut(s) | 339, 943, 1053 |
| MalI | GATC | 2 cut(s) | 648, 722 |
| MboI | GATC | 2 cut(s) | 646, 720 |
| MfeI | CAATTG | 1 cut(s) | 1311 |
| MhlI | GDGCHC | 1 cut(s) | 803 |
| MluCI | AATT | 9 cut(s) | 113, 120, 136, 235, 366, 578, 609, 1116, 1311 |
| MlyI | GAGTC | 3 cut(s) | 472, 656, 1171 |
| MmeI | TCCRAC | 4 cut(s) | 772, 890, 1188, 1248 |
| MroI | TCCGGA | 1 cut(s) | 496 |
| MroXI | GAANNNNTTC | 1 cut(s) | 413 |
| MseI | TTAA | 6 cut(s) | 489, 711, 831, 1110, 1122, 1467 |
| MslI | CAYNNNNRTG | 2 cut(s) | 930, 1332 |
| MspCI | CTTAAG | 1 cut(s) | 830 |
| MspI | CCGG | 3 cut(s) | 497, 950, 1157 |
| MspR9I | CCNGG | 1 cut(s) | 951 |
| MunI | CAATTG | 1 cut(s) | 1311 |
| MvnI | CGCG | 1 cut(s) | 1289 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 1295 |
| NciI | CCSGG | 1 cut(s) | 951 |
| NdeI | CATATG | 1 cut(s) | 1329 |
| NdeII | GATC | 2 cut(s) | 646, 720 |
| NlaIII | CATG | 3 cut(s) | 929, 1047, 1322 |
| NlaIV | GGNNCC | 3 cut(s) | 504, 822, 851 |
| NmuCI | GTSAC | 1 cut(s) | 943 |
| NspI | RCATGY | 1 cut(s) | 929 |
| PdmI | GAANNNNTTC | 1 cut(s) | 413 |
| PfeI | GAWTC | 1 cut(s) | 309 |
| PflFI | GACNNNGTC | 1 cut(s) | 400 |
| PinAI | ACCGGT | 1 cut(s) | 1156 |
| PkrI | GCNGC | 1 cut(s) | 1297 |
| PleI | GAGTC | 3 cut(s) | 471, 656, 1170 |
| PpsI | GAGTC | 3 cut(s) | 471, 656, 1170 |
| Ppu21I | YACGTR | 1 cut(s) | 344 |
| PpuMI | RGGWCCY | 1 cut(s) | 502 |
| Psp5II | RGGWCCY | 1 cut(s) | 502 |
| PspN4I | GGNNCC | 3 cut(s) | 504, 822, 851 |
| PspPI | GGNCC | 2 cut(s) | 502, 1226 |
| PspPPI | RGGWCCY | 1 cut(s) | 502 |
| PsyI | GACNNNGTC | 1 cut(s) | 400 |
| RsaI | GTAC | 2 cut(s) | 851, 1252 |
| RsaNI | GTAC | 2 cut(s) | 850, 1251 |
| RseI | CAYNNNNRTG | 2 cut(s) | 930, 1332 |
| SaqAI | TTAA | 6 cut(s) | 489, 711, 831, 1110, 1122, 1467 |
| SatI | GCNGC | 1 cut(s) | 1296 |
| Sau3AI | GATC | 2 cut(s) | 646, 720 |
| Sau96I | GGNCC | 2 cut(s) | 502, 1226 |
| SchI | GAGTC | 3 cut(s) | 472, 656, 1171 |
| ScrFI | CCNGG | 1 cut(s) | 951 |
| SduI | GDGCHC | 1 cut(s) | 803 |
| SfaNI | GCATC | 1 cut(s) | 952 |
| SinI | GGWCC | 2 cut(s) | 502, 1226 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 930, 1332 |
| SmlI | CTYRAG | 1 cut(s) | 830 |
| SmoI | CTYRAG | 1 cut(s) | 830 |
| SnaBI | TACGTA | 1 cut(s) | 344 |
| Sse9I | AATT | 9 cut(s) | 113, 120, 136, 235, 366, 578, 609, 1116, 1311 |
| SsiI | CCGC | 4 cut(s) | 201, 359, 448, 1289 |
| SspI | AATATT | 1 cut(s) | 82 |
| SspMI | CTAG | 2 cut(s) | 468, 825 |
| StyD4I | CCNGG | 1 cut(s) | 949 |
| TaaI | ACNGT | 4 cut(s) | 38, 179, 373, 1255 |
| TaiI | ACGT | 4 cut(s) | 346, 707, 1060, 1464 |
| TasI | AATT | 9 cut(s) | 113, 120, 136, 235, 366, 578, 609, 1116, 1311 |
| TfiI | GAWTC | 1 cut(s) | 309 |
| Tru1I | TTAA | 6 cut(s) | 489, 711, 831, 1110, 1122, 1467 |
| Tru9I | TTAA | 6 cut(s) | 489, 711, 831, 1110, 1122, 1467 |
| TscAI | CASTG | 1 cut(s) | 79 |
| TseFI | GTSAC | 1 cut(s) | 943 |
| TseI | GCWGC | 1 cut(s) | 1295 |
| Tsp45I | GTSAC | 1 cut(s) | 943 |
| TspDTI | ATGAA | 4 cut(s) | 552, 1032, 1128, 1316 |
| TspGWI | ACGGA | 1 cut(s) | 1026 |
| TspRI | CASTG | 1 cut(s) | 79 |
| Tth111I | GACNNNGTC | 1 cut(s) | 400 |
| Vha464I | CTTAAG | 1 cut(s) | 830 |
| VpaK11BI | GGWCC | 2 cut(s) | 502, 1226 |
| XapI | RAATTY | 4 cut(s) | 113, 136, 578, 1116 |
| XceI | RCATGY | 1 cut(s) | 929 |
| XmiI | GTMKAC | 1 cut(s) | 181 |
| XmnI | GAANNNNTTC | 1 cut(s) | 413 |
| XspI | CTAG | 2 cut(s) | 468, 825 |