ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccIII | TCCGGA | 2 cut(s) | 325, 339 |
| AciI | CCGC | 3 cut(s) | 25, 41, 602 |
| AclWI | GGATC | 2 cut(s) | 404, 1040 |
| AcsI | RAATTY | 5 cut(s) | 65, 471, 713, 989, 1069 |
| AcvI | CACGTG | 1 cut(s) | 634 |
| AfaI | GTAC | 1 cut(s) | 174 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 91 |
| AflIII | ACRYGT | 1 cut(s) | 904 |
| AgsI | TTSAA | 5 cut(s) | 61, 74, 476, 840, 985 |
| AhlI | ACTAGT | 1 cut(s) | 821 |
| AjnI | CCWGG | 1 cut(s) | 1085 |
| AluBI | AGCT | 2 cut(s) | 628, 901 |
| AluI | AGCT | 2 cut(s) | 628, 901 |
| Alw26I | GTCTC | 2 cut(s) | 258, 1001 |
| AlwI | GGATC | 2 cut(s) | 404, 1040 |
| Aor13HI | TCCGGA | 2 cut(s) | 325, 339 |
| AoxI | GGCC | 3 cut(s) | 239, 530, 645 |
| ApeKI | GCWGC | 2 cut(s) | 599, 898 |
| ApoI | RAATTY | 5 cut(s) | 65, 471, 713, 989, 1069 |
| AseI | ATTAAT | 2 cut(s) | 267, 1122 |
| AspS9I | GGNCC | 2 cut(s) | 530, 645 |
| AsuHPI | GGTGA | 3 cut(s) | 394, 419, 1064 |
| BaeGI | GKGCMC | 1 cut(s) | 264 |
| BanII | GRGCYC | 1 cut(s) | 847 |
| BbrPI | CACGTG | 1 cut(s) | 634 |
| BbvI | GCAGC | 2 cut(s) | 611, 910 |
| BccI | CCATC | 3 cut(s) | 124, 674, 821 |
| BciT130I | CCWGG | 1 cut(s) | 1087 |
| BcoDI | GTCTC | 2 cut(s) | 258, 1001 |
| BcuI | ACTAGT | 1 cut(s) | 821 |
| BfaI | CTAG | 4 cut(s) | 375, 822, 1092, 1141 |
| BfmI | CTRYAG | 1 cut(s) | 558 |
| BisI | GCNGC | 2 cut(s) | 600, 899 |
| BlsI | GCNGC | 2 cut(s) | 601, 900 |
| Bme1390I | CCNGG | 1 cut(s) | 1087 |
| BmgT120I | GGNCC | 2 cut(s) | 530, 645 |
| BmiI | GGNNCC | 2 cut(s) | 38, 646 |
| BmrFI | CCNGG | 1 cut(s) | 1087 |
| BmrI | ACTGGG | 1 cut(s) | 185 |
| BmsI | GCATC | 3 cut(s) | 569, 628, 1119 |
| BmuI | ACTGGG | 1 cut(s) | 185 |
| BpuEI | CTTGAG | 1 cut(s) | 1022 |
| BsaAI | YACGTR | 1 cut(s) | 634 |
| BsaJI | CCNNGG | 3 cut(s) | 884, 1086, 1114 |
| BsaWI | WCCGGW | 2 cut(s) | 325, 339 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 998, 1028 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 91 |
| Bse1I | ACTGG | 1 cut(s) | 180 |
| BseAI | TCCGGA | 2 cut(s) | 325, 339 |
| BseBI | CCWGG | 1 cut(s) | 1087 |
| BseDI | CCNNGG | 3 cut(s) | 884, 1086, 1114 |
| BseGI | GGATG | 3 cut(s) | 643, 813, 1110 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 91 |
| BseMII | CTCAG | 3 cut(s) | 269, 439, 663 |
| BseNI | ACTGG | 1 cut(s) | 180 |
| BseRI | GAGGAG | 3 cut(s) | 140, 306, 1019 |
| BseSI | GKGCMC | 1 cut(s) | 264 |
| BseXI | GCAGC | 2 cut(s) | 611, 910 |
| BshFI | GGCC | 3 cut(s) | 241, 532, 647 |
| BsiSI | CCGG | 2 cut(s) | 326, 340 |
| BslFI | GGGAC | 1 cut(s) | 708 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 91 |
| BsmAI | GTCTC | 2 cut(s) | 258, 1001 |
| BsmBI | CGTCTC | 1 cut(s) | 258 |
| BsmFI | GGGAC | 1 cut(s) | 708 |
| BsnI | GGCC | 3 cut(s) | 241, 532, 647 |
| Bsp1286I | GDGCHC | 2 cut(s) | 264, 847 |
| Bsp13I | TCCGGA | 2 cut(s) | 325, 339 |
| Bsp143I | GATC | 5 cut(s) | 396, 458, 652, 1032, 1054 |
| BspACI | CCGC | 3 cut(s) | 25, 41, 602 |
| BspANI | GGCC | 3 cut(s) | 241, 532, 647 |
| BspCNI | CTCAG | 3 cut(s) | 268, 438, 662 |
| BspEI | TCCGGA | 2 cut(s) | 325, 339 |
| BspHI | TCATGA | 1 cut(s) | 622 |
| BspLI | GGNNCC | 2 cut(s) | 38, 646 |
| BspPI | GGATC | 2 cut(s) | 404, 1040 |
| BsrI | ACTGG | 1 cut(s) | 180 |
| BssECI | CCNNGG | 3 cut(s) | 884, 1086, 1114 |
| BssMI | GATC | 5 cut(s) | 396, 458, 652, 1032, 1054 |
| BssT1I | CCWWGG | 1 cut(s) | 1114 |
| Bst2UI | CCWGG | 1 cut(s) | 1087 |
| Bst4CI | ACNGT | 1 cut(s) | 235 |
| BstBAI | YACGTR | 1 cut(s) | 634 |
| BstDEI | CTNAG | 4 cut(s) | 255, 425, 649, 848 |
| BstDSI | CCRYGG | 1 cut(s) | 884 |
| BstF5I | GGATG | 3 cut(s) | 643, 813, 1110 |
| BstKTI | GATC | 5 cut(s) | 399, 461, 655, 1035, 1057 |
| BstMAI | GTCTC | 2 cut(s) | 258, 1001 |
| BstMBI | GATC | 5 cut(s) | 396, 458, 652, 1032, 1054 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 746, 1116 |
| BstNI | CCWGG | 1 cut(s) | 1087 |
| BstNSI | RCATGY | 1 cut(s) | 908 |
| BstSCI | CCNGG | 1 cut(s) | 1085 |
| BstSFI | CTRYAG | 1 cut(s) | 558 |
| BstSLI | GKGCMC | 1 cut(s) | 264 |
| BstV1I | GCAGC | 2 cut(s) | 611, 910 |
| BstX2I | RGATCY | 1 cut(s) | 1032 |
| BstYI | RGATCY | 1 cut(s) | 1032 |
| BsuRI | GGCC | 3 cut(s) | 241, 532, 647 |
| BtgI | CCRYGG | 1 cut(s) | 884 |
| BtgZI | GCGATG | 1 cut(s) | 224 |
| BtsCI | GGATG | 3 cut(s) | 643, 813, 1110 |
| BtsIMutI | CAGTG | 1 cut(s) | 433 |
| CciI | TCATGA | 1 cut(s) | 622 |
| Cfr13I | GGNCC | 2 cut(s) | 530, 645 |
| Csp6I | GTAC | 1 cut(s) | 173 |
| CviAII | CATG | 5 cut(s) | 284, 623, 905, 1038, 1076 |
| CviQI | GTAC | 1 cut(s) | 173 |
| DdeI | CTNAG | 4 cut(s) | 255, 425, 649, 848 |
| DpnI | GATC | 5 cut(s) | 398, 460, 654, 1034, 1056 |
| DpnII | GATC | 5 cut(s) | 396, 458, 652, 1032, 1054 |
| Eco130I | CCWWGG | 1 cut(s) | 1114 |
| Eco147I | AGGCCT | 1 cut(s) | 241 |
| Eco24I | GRGCYC | 1 cut(s) | 847 |
| Eco72I | CACGTG | 1 cut(s) | 634 |
| EcoO109I | RGGNCCY | 1 cut(s) | 645 |
| EcoRII | CCWGG | 1 cut(s) | 1085 |
| EcoT14I | CCWWGG | 1 cut(s) | 1114 |
| EcoT38I | GRGCYC | 1 cut(s) | 847 |
| ErhI | CCWWGG | 1 cut(s) | 1114 |
| Esp3I | CGTCTC | 1 cut(s) | 258 |
| FaeI | CATG | 5 cut(s) | 287, 626, 908, 1041, 1079 |
| FaqI | GGGAC | 1 cut(s) | 708 |
| FatI | CATG | 5 cut(s) | 283, 622, 904, 1037, 1075 |
| FauI | CCCGC | 2 cut(s) | 18, 48 |
| Fnu4HI | GCNGC | 2 cut(s) | 600, 899 |
| FokI | GGATG | 3 cut(s) | 650, 800, 1097 |
| FriOI | GRGCYC | 1 cut(s) | 847 |
| Fsp4HI | GCNGC | 2 cut(s) | 600, 899 |
| FspBI | CTAG | 4 cut(s) | 375, 822, 1092, 1141 |
| GluI | GCNGC | 2 cut(s) | 600, 899 |
| HaeIII | GGCC | 3 cut(s) | 241, 532, 647 |
| HapII | CCGG | 2 cut(s) | 326, 340 |
| Hin1II | CATG | 5 cut(s) | 287, 626, 908, 1041, 1079 |
| HincII | GTYRAC | 1 cut(s) | 675 |
| HindII | GTYRAC | 1 cut(s) | 675 |
| HinfI | GANTC | 3 cut(s) | 322, 1105, 1137 |
| HpaII | CCGG | 2 cut(s) | 326, 340 |
| HphI | GGTGA | 3 cut(s) | 394, 419, 1064 |
| Hpy166II | GTNNAC | 2 cut(s) | 173, 675 |
| Hpy188I | TCNGA | 3 cut(s) | 463, 652, 1132 |
| Hpy188III | TCNNGA | 7 cut(s) | 326, 340, 484, 593, 623, 779, 817 |
| Hpy8I | GTNNAC | 2 cut(s) | 173, 675 |
| HpyAV | CCTTC | 2 cut(s) | 115, 281 |
| HpyCH4III | ACNGT | 1 cut(s) | 235 |
| HpyCH4IV | ACGT | 1 cut(s) | 633 |
| HpyCH4V | TGCA | 2 cut(s) | 641, 952 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 746, 1116 |
| HpyF3I | CTNAG | 4 cut(s) | 255, 425, 649, 848 |
| HpySE526I | ACGT | 1 cut(s) | 633 |
| Hsp92II | CATG | 5 cut(s) | 287, 626, 908, 1041, 1079 |
| Kpn2I | TCCGGA | 2 cut(s) | 325, 339 |
| Kzo9I | GATC | 5 cut(s) | 396, 458, 652, 1032, 1054 |
| Lsp1109I | GCAGC | 2 cut(s) | 611, 910 |
| LweI | GCATC | 3 cut(s) | 569, 628, 1119 |
| MaeI | CTAG | 4 cut(s) | 375, 822, 1092, 1141 |
| MaeII | ACGT | 1 cut(s) | 633 |
| MaeIII | GTNAC | 4 cut(s) | 304, 430, 507, 538 |
| MalI | GATC | 5 cut(s) | 398, 460, 654, 1034, 1056 |
| MboI | GATC | 5 cut(s) | 396, 458, 652, 1032, 1054 |
| MboII | GAAGA | 6 cut(s) | 62, 73, 735, 803, 901, 1114 |
| MflI | RGATCY | 1 cut(s) | 1032 |
| MhlI | GDGCHC | 2 cut(s) | 264, 847 |
| MluCI | AATT | 9 cut(s) | 65, 148, 471, 713, 784, 934, 989, 1069, 1126 |
| MmeI | TCCRAC | 2 cut(s) | 197, 552 |
| MroI | TCCGGA | 2 cut(s) | 325, 339 |
| MseI | TTAA | 8 cut(s) | 147, 267, 414, 588, 806, 831, 1043, 1122 |
| MslI | CAYNNNNRTG | 5 cut(s) | 195, 267, 269, 621, 636 |
| MspA1I | CMGCKG | 1 cut(s) | 602 |
| MspI | CCGG | 2 cut(s) | 326, 340 |
| MspR9I | CCNGG | 1 cut(s) | 1087 |
| MvaI | CCWGG | 1 cut(s) | 1087 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 746, 1116 |
| NdeII | GATC | 5 cut(s) | 396, 458, 652, 1032, 1054 |
| NlaIII | CATG | 5 cut(s) | 287, 626, 908, 1041, 1079 |
| NlaIV | GGNNCC | 2 cut(s) | 38, 646 |
| NmuCI | GTSAC | 1 cut(s) | 304 |
| NspI | RCATGY | 1 cut(s) | 908 |
| PagI | TCATGA | 1 cut(s) | 622 |
| PceI | AGGCCT | 1 cut(s) | 241 |
| PciI | ACATGT | 1 cut(s) | 904 |
| PfeI | GAWTC | 2 cut(s) | 322, 1105 |
| PkrI | GCNGC | 2 cut(s) | 601, 900 |
| PmaCI | CACGTG | 1 cut(s) | 634 |
| PmlI | CACGTG | 1 cut(s) | 634 |
| Ppu21I | YACGTR | 1 cut(s) | 634 |
| PscI | ACATGT | 1 cut(s) | 904 |
| PshBI | ATTAAT | 2 cut(s) | 267, 1122 |
| Psp6I | CCWGG | 1 cut(s) | 1085 |
| PspCI | CACGTG | 1 cut(s) | 634 |
| PspGI | CCWGG | 1 cut(s) | 1085 |
| PspN4I | GGNNCC | 2 cut(s) | 38, 646 |
| PspPI | GGNCC | 2 cut(s) | 530, 645 |
| PsuI | RGATCY | 1 cut(s) | 1032 |
| RsaI | GTAC | 1 cut(s) | 174 |
| RsaNI | GTAC | 1 cut(s) | 173 |
| RseI | CAYNNNNRTG | 5 cut(s) | 195, 267, 269, 621, 636 |
| SaqAI | TTAA | 8 cut(s) | 147, 267, 414, 588, 806, 831, 1043, 1122 |
| SatI | GCNGC | 2 cut(s) | 600, 899 |
| Sau3AI | GATC | 5 cut(s) | 396, 458, 652, 1032, 1054 |
| Sau96I | GGNCC | 2 cut(s) | 530, 645 |
| ScrFI | CCNGG | 1 cut(s) | 1087 |
| SduI | GDGCHC | 2 cut(s) | 264, 847 |
| SetI | ASST | 8 cut(s) | 157, 166, 572, 630, 636, 903, 923, 972 |
| SfaNI | GCATC | 3 cut(s) | 569, 628, 1119 |
| SfcI | CTRYAG | 1 cut(s) | 558 |
| SmiMI | CAYNNNNRTG | 5 cut(s) | 195, 267, 269, 621, 636 |
| SmlI | CTYRAG | 1 cut(s) | 1001 |
| SmoI | CTYRAG | 1 cut(s) | 1001 |
| SpeI | ACTAGT | 1 cut(s) | 821 |
| Sse9I | AATT | 9 cut(s) | 65, 148, 471, 713, 784, 934, 989, 1069, 1126 |
| SseBI | AGGCCT | 1 cut(s) | 241 |
| SsiI | CCGC | 3 cut(s) | 25, 41, 602 |
| SspMI | CTAG | 4 cut(s) | 375, 822, 1092, 1141 |
| StuI | AGGCCT | 1 cut(s) | 241 |
| StyD4I | CCNGG | 1 cut(s) | 1085 |
| StyI | CCWWGG | 1 cut(s) | 1114 |
| TaaI | ACNGT | 1 cut(s) | 235 |
| TaiI | ACGT | 1 cut(s) | 636 |
| TaqI | TCGA | 1 cut(s) | 778 |
| TasI | AATT | 9 cut(s) | 65, 148, 471, 713, 784, 934, 989, 1069, 1126 |
| TatI | WGTACW | 1 cut(s) | 172 |
| TfiI | GAWTC | 2 cut(s) | 322, 1105 |
| Tru1I | TTAA | 8 cut(s) | 147, 267, 414, 588, 806, 831, 1043, 1122 |
| Tru9I | TTAA | 8 cut(s) | 147, 267, 414, 588, 806, 831, 1043, 1122 |
| TscAI | CASTG | 1 cut(s) | 433 |
| TseFI | GTSAC | 1 cut(s) | 304 |
| TseI | GCWGC | 2 cut(s) | 599, 898 |
| Tsp45I | GTSAC | 1 cut(s) | 304 |
| TspDTI | ATGAA | 3 cut(s) | 300, 611, 1064 |
| TspGWI | ACGGA | 1 cut(s) | 901 |
| TspRI | CASTG | 1 cut(s) | 433 |
| VspI | ATTAAT | 2 cut(s) | 267, 1122 |
| XapI | RAATTY | 5 cut(s) | 65, 471, 713, 989, 1069 |
| XceI | RCATGY | 1 cut(s) | 908 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 540 |
| XspI | CTAG | 4 cut(s) | 375, 822, 1092, 1141 |